IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2855	 64.02	-1	3121306..3121683	-	125	188582141	-	Mpop_2896	-	hypothetical protein
2856	 68.73	0	3121869..3124721	+	950	188582142	-	Mpop_2897	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2857	 65.27	-1	3124954..3125811	+	285	188582143	-	Mpop_2898	-	Catalase
2858	 66.08	0	3125893..3126402	+	169	188582144	-	Mpop_2899	-	protein of unknown function DUF892
2859	 71.07	0	3126487..3127212	-	241	188582145	-	Mpop_2900	-	hypothetical protein
2860	 70.63	0	3127247..3127498	+	83	188582146	-	Mpop_2901	-	hypothetical protein
2861	 71.65	0	3127932..3129776	+	614	188582147	-	Mpop_2902	-	Chloride channel core
2862	 75.05	+1	3129821..3130345	+	174	188582148	-	Mpop_2903	-	hypothetical protein
2863	 71.23	0	3130356..3131210	+	284	188582149	-	Mpop_2904	-	2-dehydro-3-deoxyphosphooctonate aldolase
2864	 73.93	+1	3131423..3131725	+	100	188582150	-	Mpop_2905	-	putative transmembrane protein
2865	 67.75	0	3131852..3132313	-	153	188582151	-	Mpop_2906	-	7-cyano-7-deazaguanine reductase
2866	 67.91	0	3132592..3133881	+	429	188582152	-	Mpop_2907	-	Phosphopyruvate hydratase
2867	 67.95	0	3134015..3134326	+	103	188582153	-	Mpop_2908	-	Septum formation initiator
2868	 66.76	0	3134501..3135550	+	349	188582154	-	Mpop_2909	-	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
2869	 67.15	0	3135668..3137119	+	483	188582155	-	Mpop_2910	-	Transketolase central region
2870	 67.38	0	3137130..3137408	+	92	188582156	-	Mpop_2911	-	hypothetical protein
2871	 67.80	0	3137440..3138852	+	470	188582157	-	Mpop_2912	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
2872	 66.46	0	3139038..3140477	+	479	188582158	-	Mpop_2913	-	dihydrolipoamide dehydrogenase
2873	 60.56	-2	3140726..3140905	+	59	188582159	-	Mpop_2914	-	hypothetical protein
2874	 72.51	0	3140965..3141477	-	170	188582160	-	Mpop_2915	-	hypothetical protein
2875	 71.89	0	3141602..3142309	-	235	188582161	-	Mpop_2916	-	protein of unknown function DUF1275
2876	 75.24	+1	3142649..3143161	+	170	188582162	-	Mpop_2917	-	endo-1,4-beta-glucanase
2877	 72.28	0	3143290..3143556	+	88	188582163	-	Mpop_2918	-	hypothetical protein
2878	 69.83	0	3143644..3144276	+	210	188582164	-	Mpop_2919	-	ErfK/YbiS/YcfS/YnhG family protein
2879	 68.15	0	3144332..3145678	-	448	188582165	-	Mpop_2920	-	L-sorbosone dehydrogenase
2880	 71.30	0	3145718..3145933	-	71	188582166	-	Mpop_2921	-	hypothetical protein
2881	 68.43	0	3146154..3146891	+	245	188582167	-	Mpop_2922	-	cell wall hydrolase SleB
2882	 67.66	0	3147026..3148030	+	334	188582168	-	Mpop_2923	-	lipoic acid synthetase
2883	 65.14	-1	3148037..3148495	+	152	188582169	-	Mpop_2924	-	cyclase/dehydrase
2884	 71.83	0	3148496..3148921	-	141	188582170	-	Mpop_2925	-	transcriptional regulator, AsnC family
2885	 70.25	0	3149053..3150084	+	343	188582171	-	Mpop_2926	-	Ornithine cyclodeaminase
2886	 60.88	-2	3150097..3150390	-	97	188582172	-	Mpop_2927	-	plasmid maintenance system antidote protein, XRE family
2887	 58.51	-2	3150421..3150702	-	93	188582173	-	Mpop_2928	-	plasmid maintenance system killer
2888	 68.83	0	3150788..3151111	-	107	188582174	-	Mpop_2929	-	hypothetical protein
2889	 72.51	0	3151108..3152853	-	581	188582175	-	Mpop_2930	-	ABC transporter related
2890	 67.68	0	3153526..3154020	+	164	188582176	-	Mpop_2931	-	(2Fe-2S)-binding domain protein
2891	 73.52	0	3154017..3155066	+	349	188582177	-	Mpop_2932	-	molybdopterin dehydrogenase FAD-binding
2892	 71.70	0	3155059..3157302	+	747	188582178	-	Mpop_2933	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
2893	 71.78	0	3157459..3157986	-	175	188582179	-	Mpop_2934	-	CinA domain protein
2894	 72.64	0	3157983..3159305	-	440	188582180	-	Mpop_2935	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2895	 73.37	0	3159433..3160461	+	342	188582181	-	Mpop_2936	-	TIM-barrel protein, nifR3 family
2896	 68.59	0	3160461..3161606	+	381	188582182	-	Mpop_2937	-	signal transduction histidine kinase, nitrogen specific, NtrB
2897	 69.53	0	3161617..3163083	+	488	188582183	-	Mpop_2938	-	nitrogen metabolism transcriptional regulator, NtrC, Fis Family
2898	 73.38	0	3163358..3164995	+	545	188582184	-	Mpop_2939	-	helicase domain protein
2899	 69.12	0	3165060..3167459	+	799	188582185	-	Mpop_2940	-	multi-sensor signal transduction histidine kinase
2900	 69.51	0	3167456..3168826	+	456	188582186	-	Mpop_2941	-	two component, sigma54 specific, transcriptional regulator, Fis family
2901	 60.78	-2	3169067..3169321	+	84	188582187	-	Mpop_2942	-	RNA chaperone Hfq
2902	 71.19	0	3169437..3170852	+	471	188582188	-	Mpop_2943	-	GTP-binding proten HflX
2903	 71.70	0	3170991..3172559	-	522	188582189	-	Mpop_2944	-	sulphate transporter
2904	 68.08	0	3172570..3173277	-	235	188582190	-	Mpop_2945	-	Carbonate dehydratase
2905	 74.04	+1	3173578..3173889	-	103	188582191	-	Mpop_2946	-	hypothetical protein
2906	 62.79	-1	3174561..3174947	-	128	188582192	-	Mpop_2947	-	protein of unknown function DUF305
2907	 72.62	0	3174975..3175394	-	139	188582193	-	Mpop_2948	-	hypothetical protein
2908	 70.48	0	3175420..3178596	-	1058	188582194	-	Mpop_2949	-	acriflavin resistance protein
2909	 74.44	+1	3178610..3180319	-	569	188582195	-	Mpop_2950	-	efflux transporter, RND family, MFP subunit
2910	 74.72	+1	3180390..3180836	-	148	188582196	-	Mpop_2951	-	conserved hypothetical protein; putative esterase/lipase/thioesterase domain
2911	 63.98	-1	3181451..3181933	+	160	188582197	-	Mpop_2952	-	transcriptional regulator, MucR family
2912	 72.88	0	3182009..3182587	+	192	188582198	-	Mpop_2953	-	CheW protein
2913	 71.02	0	3182599..3184068	+	489	188582199	-	Mpop_2954	-	MCP methyltransferase, CheR-type with Tpr repeats
2914	 74.77	+1	3184065..3184619	+	184	188582200	-	Mpop_2955	-	CheW protein
2915	 70.40	0	3184674..3186359	+	561	188582201	-	Mpop_2956	-	methyl-accepting chemotaxis sensory transducer
2916	 73.87	+1	3186384..3188660	+	758	188582202	-	Mpop_2957	-	CheA signal transduction histidine kinase
2917	 73.02	0	3188657..3189742	+	361	188582203	-	Mpop_2958	-	response regulator receiver modulated CheB methylesterase
2918	 71.68	0	3189739..3191454	+	571	188582204	-	Mpop_2959	-	response regulator receiver sensor signal transduction histidine kinase
2919	 71.00	0	3191451..3193319	+	622	188582205	-	Mpop_2960	-	PAS/PAC sensor hybrid histidine kinase
2920	 66.67	0	3193489..3193662	+	57	188582206	-	Mpop_2961	-	metallothionein family 14
2921	 74.83	+1	3193690..3195036	-	448	188582207	-	Mpop_2962	-	cytochrome c class I
2922	 76.92	+1	3195277..3196368	+	363	188582208	-	Mpop_2963	-	molybdopterin binding domain
2923	 74.20	+1	3196377..3198353	+	658	188582209	-	Mpop_2964	-	molybdenum cofactor synthesis domain protein
2924	 70.95	0	3198350..3198886	+	178	188582210	-	Mpop_2965	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2925	 74.34	+1	3198890..3200140	+	416	188582211	-	Mpop_2966	-	molybdenum cofactor synthesis domain protein
2926	 72.50	0	3200175..3201236	-	353	188582212	-	Mpop_2967	-	transcriptional regulator of molybdate metabolism, LysR family
2927	 70.83	0	3201325..3202020	+	231	188582213	-	Mpop_2968	-	binding-protein-dependent transport systems inner membrane component
2928	 72.38	0	3202017..3202733	+	238	188582214	-	Mpop_2969	-	ABC transporter related
2929	 68.24	0	3202706..3203533	+	275	188582215	-	Mpop_2970	-	extracellular solute-binding protein family 1
2930	 73.25	0	3203608..3203850	-	80	188582216	-	Mpop_2971	-	hypothetical protein
2931	 71.32	0	3203898..3204542	-	214	188582217	-	Mpop_2972	-	PRC-barrel domain protein
2932	 72.51	0	3204610..3206286	-	558	188582218	-	Mpop_2973	-	periplasmic glucan biosynthesis protein MdoG
2933	 72.77	0	3206321..3208252	+	643	188582219	-	Mpop_2974	-	cyclic nucleotide-binding protein
2934	 70.00	0	3208277..3208786	-	169	188582220	-	Mpop_2975	-	hypothetical protein
2935	 73.52	0	3208827..3210080	-	417	188582221	-	Mpop_2976	-	Cystathionine gamma-synthase
2936	 70.54	0	3210177..3210692	+	171	188582222	-	Mpop_2977	-	TspO and MBR like protein
2937	 71.96	0	3210775..3212172	-	465	188582223	-	Mpop_2978	-	FAD linked oxidase domain protein
2938	 69.46	0	3212189..3213439	-	416	188582224	-	Mpop_2979	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2939	 68.85	0	3213717..3214082	-	121	188582225	-	Mpop_2980	-	response regulator receiver protein
2940	 67.72	0	3214246..3214815	-	189	188582226	-	Mpop_2981	-	hypoxanthine phosphoribosyltransferase
2941	 74.29	+1	3215169..3215903	-	244	188582227	-	Mpop_2982	-	MJ0042 family finger-like protein
2942	 69.75	0	3216058..3216771	+	237	188582228	-	Mpop_2983	-	cell division ATP-binding protein FtsE
2943	 72.74	0	3216768..3217739	+	323	188582229	-	Mpop_2984	-	protein of unknown function DUF214
2944	 69.22	0	3217986..3218690	+	234	188582230	-	Mpop_2985	-	protein of unknown function DUF218
2945	 69.60	0	3218795..3219169	-	124	188582231	-	Mpop_2986	-	response regulator receiver protein
2946	 72.04	0	3219404..3220594	+	396	188582232	-	Mpop_2987	-	glutamate 5-kinase
2947	 71.98	0	3220743..3222041	+	432	188582233	-	Mpop_2988	-	gamma-glutamyl phosphate reductase
2948	 73.73	+1	3222205..3222657	+	150	188582234	-	Mpop_2989	-	cytidylyltransferase
2949	 68.14	0	3222672..3223145	+	157	188582235	-	Mpop_2990	-	iojap-like protein
2950	 72.75	0	3223149..3223838	-	229	188582236	-	Mpop_2991	-	hypothetical protein
2951	 67.56	0	3223883..3224443	-	186	188582237	-	Mpop_2992	-	conserved hypothetical protein; putative transcriptional regulatory protein
2952	 68.88	0	3224533..3225573	-	346	188582238	-	Mpop_2993	-	Aldose 1-epimerase
2953	 62.70	-1	3225658..3225783	-	41	188582239	-	Mpop_2994	-	hypothetical protein
2954	 62.35	-1	3225780..3226034	-	84	188582240	-	Mpop_2995	-	hypothetical protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.