IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2445	 70.29	0	2698301..2698963	+	220	188581731	-	Mpop_2480	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
2446	 71.49	0	2699005..2699751	+	248	188581732	-	Mpop_2481	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2447	 63.37	-1	2699775..2700260	+	161	188581733	-	Mpop_2482	-	protein of unknown function DUF29
2448	 70.40	0	2700272..2701048	+	258	188581734	-	Mpop_2483	-	imidazoleglycerol phosphate synthase, cyclase subunit
2449	 69.15	0	2701130..2701492	+	120	188581735	-	Mpop_2484	-	phosphoribosyl-ATP diphosphatase
2450	 67.85	0	2701489..2702502	+	337	188581736	-	Mpop_2485	-	pantothenate kinase
2451	 63.56	-1	2702542..2703120	-	192	188581737	-	Mpop_2486	-	hypothetical protein
2452	 68.96	0	2703498..2704631	+	377	188581738	-	Mpop_2487	-	hypothetical protein
2453	 70.69	0	2704863..2705384	+	173	188581739	-	Mpop_2488	-	response regulator receiver protein
2454	 67.06	0	2705439..2705945	-	168	188581740	-	Mpop_2489	-	hypothetical protein
2455	 67.99	0	2706408..2707085	+	225	188581741	-	Mpop_2490	-	ErfK/YbiS/YcfS/YnhG family protein
2456	 73.83	+1	2707204..2707524	-	106	188581742	-	Mpop_2491	-	hypothetical protein
2457	 67.30	0	2707718..2708194	-	158	188581743	-	Mpop_2492	-	phasin
2458	 72.99	0	2708434..2710995	+	853	188581744	-	Mpop_2493	-	PAS/PAC sensor signal transduction histidine kinase
2459	 66.21	0	2711266..2713215	+	649	188581745	-	Mpop_2494	-	acetate--CoA ligase
2460	 66.67	0	2713431..2713817	+	128	188581746	-	Mpop_2495	-	protein of unknown function DUF485
2461	 66.90	0	2713814..2715499	+	561	188581747	-	Mpop_2496	-	SSS sodium solute transporter superfamily
2462	 65.78	0	2715871..2717559	+	562	188581748	-	Mpop_2497	-	major facilitator superfamily MFS_1
2463	 70.67	0	2717654..2719252	-	532	188581749	-	Mpop_2498	-	phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
2464	 73.96	+1	2719411..2721123	-	570	188581750	-	Mpop_2499	-	Heparinase II/III family protein
2465	 73.03	0	2721310..2722158	-	282	188581751	-	Mpop_2500	-	Rhodanese domain protein
2466	 74.26	+1	2722360..2722596	+	78	188581752	-	Mpop_2501	-	hypothetical protein
2467	 63.17	-1	2722693..2723778	-	361	188581753	-	Mpop_2502	-	Hemolysin-type calcium-binding region
2468	 73.57	0	2724305..2725825	+	506	188581754	-	Mpop_2503	-	DEAD/DEAH box helicase domain protein
2469	 65.05	-1	2725930..2726115	+	61	188581755	-	Mpop_2504	-	protein of unknown function DUF1508
2470	 69.47	0	2726244..2726528	+	94	188581756	-	Mpop_2505	-	hypothetical protein
2471	 68.06	0	2726735..2726878	+	47	188581757	-	Mpop_2506	-	hypothetical protein
2472	 68.40	0	2726968..2727372	+	134	188581758	-	Mpop_2507	-	thioesterase superfamily protein
2473	 70.08	0	2727449..2728093	+	214	188581759	-	Mpop_2508	-	beta-lactamase domain protein
2474	 68.01	0	2728326..2730773	+	815	188581760	-	Mpop_2509	-	DNA gyrase, B subunit
2475	 67.25	0	2731433..2731774	-	113	188581761	-	Mpop_2510	-	hypothetical protein
2476	 67.43	0	2731784..2732572	-	262	188581762	-	Mpop_2511	-	FRG domain protein
2477	 70.05	0	2732591..2733772	-	393	188581763	-	Mpop_2512	-	nucleoside 2-deoxyribosyltransferase
2478	 73.04	0	2733769..2734113	-	114	188581764	-	Mpop_2513	-	hypothetical protein
2479	 72.04	0	2734117..2734749	-	210	188581765	-	Mpop_2514	-	ExsB family protein
2480	 72.47	0	2734746..2735933	-	395	188581766	-	Mpop_2515	-	nucleoside 2-deoxyribosyltransferase
2481	 72.26	0	2735930..2736340	-	136	188581767	-	Mpop_2516	-	hypothetical protein
2482	 70.75	0	2736394..2737128	-	244	188581768	-	Mpop_2517	-	hypothetical protein
2483	 69.86	0	2737180..2737524	+	114	188581769	-	Mpop_2518	-	transcriptional regulator, XRE family
2484	 72.93	0	2738751..2739596	-	281	188581770	-	Mpop_2520	-	hypothetical protein
2485	 66.04	0	2739589..2741034	-	481	188581771	-	Mpop_2521	-	deoxyguanosinetriphosphate triphosphohydrolase
2486	 69.35	0	2741514..2742035	-	173	188581772	-	Mpop_2522	-	hypothetical protein
2487	 72.47	0	2742588..2743880	-	430	188581773	-	Mpop_2524	-	hypothetical protein
2488	 74.83	+1	2745079..2745813	-	244	188581774	-	Mpop_2525	-	hypothetical protein
2489	 75.86	+1	2745914..2746087	-	57	188581775	-	Mpop_2526	-	hypothetical protein
2490	 70.11	0	2746661..2747125	-	154	188581776	-	Mpop_2527	-	hypothetical protein
2491	 73.42	0	2749690..2751036	+	448	188581777	-	Mpop_2530	-	hypothetical protein
2492	 70.52	0	2751059..2752252	+	397	188581778	-	Mpop_2531	-	hypothetical protein
2493	 73.52	0	2752290..2753456	+	388	188581779	-	Mpop_2532	-	ribosomal protein L21
2494	 72.36	0	2753393..2754253	-	286	188581780	-	Mpop_2533	-	hypothetical protein
2495	 69.54	0	2754945..2755778	-	277	188581781	-	Mpop_2534	-	hypothetical protein
2496	 67.18	0	2755790..2757157	-	455	188581782	-	Mpop_2535	-	hypothetical protein
2497	 68.32	0	2757499..2757801	-	100	188581783	-	Mpop_2536	-	protein of unknown function DUF156
2498	 68.47	0	2757966..2758298	+	110	188581784	-	Mpop_2537	-	protein of unknown function DUF326
2499	 70.50	0	2758738..2759181	-	147	188581785	-	Mpop_2538	-	transcriptional regulator, MerR family
2500	 72.86	0	2759312..2761828	-	838	188581786	-	Mpop_2539	-	heavy metal translocating P-type ATPase
2501	 72.28	0	2762030..2762296	+	88	188581787	-	Mpop_2540	-	Heavy metal transport/detoxification protein
2502	 68.14	0	2763015..2764307	+	430	188581788	-	Mpop_2541	-	hypothetical protein
2503	 70.78	0	2764654..2766111	+	485	188581789	-	Mpop_2542	-	Hemolysin-type calcium-binding region
2504	 73.17	0	2766232..2768076	+	614	188581790	-	Mpop_2543	-	type I secretion system ATPase
2505	 70.70	0	2768073..2769386	+	437	188581791	-	Mpop_2544	-	type I secretion membrane fusion protein, HlyD family
2506	 67.26	0	2769500..2769838	+	112	188581792	-	Mpop_2545	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 3
2507	 73.07	0	2769829..2770734	+	301	188581793	-	Mpop_2546	-	NADH dehydrogenase (quinone)
2508	 72.02	0	2770731..2771738	+	335	188581794	-	Mpop_2547	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
2509	 67.63	0	2771735..2772046	+	103	188581795	-	Mpop_2548	-	NADH-ubiquinone oxidoreductase chain 4L
2510	 76.39	+1	2772043..2773893	+	616	188581796	-	Mpop_2549	-	proton-translocating NADH-quinone oxidoreductase, chain L
2511	 71.74	0	2773908..2775386	+	492	188581797	-	Mpop_2550	-	proton-translocating NADH-quinone oxidoreductase, chain M
2512	 73.06	0	2775383..2776837	+	484	188581798	-	Mpop_2551	-	NADH dehydrogenase (quinone)
2513	 71.86	0	2776972..2778261	-	429	188581799	-	Mpop_2552	-	ABC-type multidrug transport system ATPase and permease components-like protein
2514	 73.50	0	2778526..2779344	-	272	188581800	-	Mpop_2553	-	hypothetical protein
2515	 72.60	0	2779479..2781839	-	786	188581801	-	Mpop_2554	-	heavy metal translocating P-type ATPase
2516	 74.07	+1	2781946..2782728	-	260	188581802	-	Mpop_2555	-	Lytic transglycosylase catalytic
2517	 74.77	+1	2782868..2783200	-	110	188581803	-	Mpop_2556	-	hypothetical protein
2518	 80.89	+2	2783381..2783830	-	149	188581804	-	Mpop_2557	-	conserved hypothetical protein; putative exported protein
2519	 68.43	0	2784079..2784930	-	283	188581805	-	Mpop_2558	-	hypothetical protein
2520	 67.09	0	2785262..2785498	+	78	188581806	-	Mpop_2559	-	hypothetical protein
2521	 69.29	0	2785491..2786786	+	431	188581807	-	Mpop_2560	-	DNA (cytosine-5-)-methyltransferase
2522	 70.26	0	2787221..2788780	+	519	188581808	-	Mpop_2561	-	DnaJ central domain protein
2523	 73.04	0	2789343..2789813	-	156	188581809	-	Mpop_2562	-	protein of unknown function DUF411
2524	 69.51	0	2789864..2793028	-	1054	188581810	-	Mpop_2563	-	heavy metal efflux pump, CzcA family
2525	 71.44	0	2793025..2794554	-	509	188581811	-	Mpop_2564	-	efflux transporter, RND family, MFP subunit
2526	 68.85	0	2794554..2795102	-	182	188581812	-	Mpop_2565	-	hypothetical protein
2527	 73.13	0	2795340..2795741	-	133	188581813	-	Mpop_2566	-	hypothetical protein
2528	 70.53	0	2795877..2796161	-	94	188581814	-	Mpop_2567	-	hypothetical protein
2529	 69.97	0	2796382..2796774	+	130	188581815	-	Mpop_2568	-	hypothetical protein
2530	 70.15	0	2796771..2797316	+	181	188581816	-	Mpop_2569	-	hypothetical protein
2531	 71.45	0	2797247..2798479	-	410	188581817	-	Mpop_2570	-	transposase, IS605 OrfB family
2532	 73.20	0	2798749..2799039	+	96	188581818	-	Mpop_2571	-	hypothetical protein
2533	 69.89	0	2799105..2799755	-	216	188581819	-	Mpop_2572	-	protein of unknown function DUF1109
2534	 68.11	0	2799752..2800306	-	184	188581820	-	Mpop_2573	-	RNA polymerase, sigma-24 subunit, ECF subfamily
2535	 70.78	0	2800739..2800981	+	80	188581821	-	Mpop_2574	-	hypothetical protein
2536	 60.22	-2	2801258..2801629	+	123	188581822	-	Mpop_2575	-	hypothetical protein
2537	 79.72	+2	2803145..2803573	+	142	188581823	-	Mpop_2576	-	putative exported protein of unknown function
2538	 74.69	+1	2803756..2804079	+	107	188581824	-	Mpop_2577	-	hypothetical protein
2539	 70.27	0	2804079..2805686	+	535	188581825	-	Mpop_2578	-	outer membrane efflux protein
2540	 68.51	0	2805783..2807141	+	452	188581826	-	Mpop_2579	-	multicopper oxidase type 3
2541	 64.56	-1	2807312..2807596	+	94	188581827	-	Mpop_2580	-	hypothetical protein
2542	 70.89	0	2807668..2808378	+	236	188581828	-	Mpop_2581	-	hypothetical protein
2543	 68.23	0	2808482..2809120	+	212	188581829	-	Mpop_2582	-	cytochrome c family protein
2544	 65.75	0	2809216..2810301	+	361	188581830	-	Mpop_2583	-	glycosyl transferase group 1
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.