IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2344	 73.00	0	2589014..2590039	-	341	188581630	-	Mpop_2378	-	methyltransferase small
2345	 70.50	0	2590042..2590797	-	251	188581631	-	Mpop_2379	-	Protein of unknown function YqcI/YcgG
2346	 67.67	0	2591072..2591668	-	198	188581632	-	Mpop_2380	-	hypothetical protein
2347	 73.10	0	2591860..2593881	+	673	188581633	-	Mpop_2381	-	oligopeptide transporter, OPT family
2348	 59.62	-2	2593950..2594744	+	264	188581634	-	Mpop_2382	-	ABC-2 type transporter
2349	 67.09	0	2595139..2595843	-	234	188581635	-	Mpop_2383	-	hypothetical protein
2350	 61.71	-1	2595836..2596057	-	73	188581636	-	Mpop_2384	-	hypothetical protein
2351	 65.83	0	2596135..2597091	-	318	188581637	-	Mpop_2385	-	hypothetical protein
2352	 66.42	0	2597091..2597489	-	132	188581638	-	Mpop_2386	-	hypothetical protein
2353	 64.89	-1	2597482..2597874	-	130	188581639	-	Mpop_2387	-	hypothetical protein
2354	 66.31	0	2597911..2598192	-	93	188581640	-	Mpop_2388	-	hypothetical protein
2355	 65.93	0	2598467..2599141	-	224	188581641	-	Mpop_2389	-	Resolvase domain
2356	 68.00	0	2599500..2600324	+	274	188581642	-	Mpop_2390	-	transposase IS4 family protein
2357	 59.18	-2	2600366..2600512	-	48	188581643	-	Mpop_2391	-	hypothetical protein
2358	 59.26	-2	2600715..2601173	-	152	188581644	-	Mpop_2392	-	hypothetical protein
2359	 64.56	-1	2601328..2601564	-	78	188581645	-	Mpop_2393	-	hypothetical protein
2360	 64.76	-1	2601848..2603056	+	402	188581646	-	Mpop_2394	-	transposase mutator type
2361	 65.94	0	2603270..2604640	-	456	188581647	-	Mpop_2395	-	integrase family protein
2362	 72.15	0	2605001..2605711	-	236	188581648	-	Mpop_2396	-	hypothetical protein
2363	 69.02	0	2605948..2607138	+	396	188581649	-	Mpop_2397	-	ribonuclease BN
2364	 71.28	0	2607667..2608056	-	129	188581650	-	Mpop_2398	-	hypothetical protein
2365	 68.35	0	2608552..2611695	+	1047	188581651	-	Mpop_2399	-	DNA polymerase I
2366	 69.98	0	2612038..2612700	-	220	188581652	-	Mpop_2400	-	Deoxyribonuclease V
2367	 67.85	0	2612714..2613811	-	365	188581653	-	Mpop_2401	-	GTP-binding protein YchF
2368	 69.19	0	2613891..2614523	-	210	188581654	-	Mpop_2402	-	Aminoacyl-tRNA hydrolase
2369	 69.58	0	2614627..2615313	-	228	188581655	-	Mpop_2403	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
2370	 67.70	0	2615479..2615961	-	160	188581656	-	Mpop_2404	-	hypothetical protein
2371	 57.95	-2	2616343..2616537	+	64	188581657	-	Mpop_2405	-	Flp/Fap pilin component
2372	 62.24	-1	2616764..2617282	+	172	188581658	-	Mpop_2406	-	peptidase A24A prepilin type IV
2373	 69.86	0	2617490..2618272	+	260	188581659	-	Mpop_2407	-	Flp pilus assembly protein CpaB
2374	 67.99	0	2618284..2619792	+	502	188581660	-	Mpop_2408	-	type II and III secretion system protein
2375	 71.91	0	2619818..2620561	+	247	188581661	-	Mpop_2409	-	pilus (Caulobacter type) biogenesis lipoprotein CpaD
2376	 69.24	0	2620649..2621893	+	414	188581662	-	Mpop_2410	-	response regulator receiver protein
2377	 68.31	0	2621941..2623398	+	485	188581663	-	Mpop_2411	-	type II secretion system protein E
2378	 67.18	0	2623395..2624366	+	323	188581664	-	Mpop_2412	-	type II secretion system protein
2379	 67.28	0	2624566..2625537	+	323	188581665	-	Mpop_2413	-	type II secretion system protein
2380	 71.77	0	2625639..2626637	+	332	188581666	-	Mpop_2414	-	MaoC domain protein dehydratase
2381	 71.97	0	2626634..2627896	+	420	188581667	-	Mpop_2415	-	major facilitator superfamily MFS_1
2382	 70.66	0	2628037..2628462	+	141	188581668	-	Mpop_2416	-	OsmC family protein
2383	 70.27	0	2628545..2629126	-	193	188581669	-	Mpop_2417	-	CoA-binding domain protein
2384	 71.53	0	2629153..2629584	+	143	188581670	-	Mpop_2418	-	thioesterase superfamily protein
2385	 70.39	0	2629609..2630925	-	438	188581671	-	Mpop_2419	-	major facilitator superfamily MFS_1
2386	 69.11	0	2631294..2632892	+	532	188581672	-	Mpop_2420	-	diguanylate cyclase
2387	 74.18	+1	2632932..2633357	-	141	188581673	-	Mpop_2421	-	BA14K family protein
2388	 71.04	0	2633519..2634433	-	304	188581674	-	Mpop_2422	-	conserved hypothetical membrane spanning protein
2389	 70.57	0	2634503..2634835	-	110	188581675	-	Mpop_2423	-	CsbD family protein
2390	 67.41	0	2635191..2635592	+	133	188581676	-	Mpop_2424	-	hypothetical protein
2391	 69.52	0	2635688..2636317	+	209	188581677	-	Mpop_2425	-	3'-5' exonuclease
2392	 69.82	0	2636523..2637284	+	253	188581678	-	Mpop_2426	-	protein of unknown function DUF1239
2393	 70.39	0	2637281..2638033	+	250	188581679	-	Mpop_2427	-	OstA family protein
2394	 70.00	0	2638051..2638920	+	289	188581680	-	Mpop_2428	-	ABC transporter related
2395	 69.47	0	2639267..2640802	+	511	188581681	-	Mpop_2429	-	RNA polymerase, sigma 54 subunit, RpoN
2396	 68.99	0	2640930..2641532	+	200	188581682	-	Mpop_2430	-	sigma 54 modulation protein/ribosomal protein S30EA
2397	 71.79	0	2641746..2642213	+	155	188581683	-	Mpop_2431	-	PTS IIA-like nitrogen-regulatory protein PtsN
2398	 71.52	0	2642216..2642545	+	109	188581684	-	Mpop_2432	-	hypothetical protein
2399	 71.79	0	2642644..2643657	+	337	188581685	-	Mpop_2433	-	magnesium chelatase ATPase subunit I
2400	 67.92	0	2643674..2644312	-	212	188581686	-	Mpop_2434	-	phosphoglycerate mutase 1 family
2401	 73.01	0	2644454..2645257	-	267	188581687	-	Mpop_2435	-	Dihydrodipicolinate reductase
2402	 70.58	0	2645330..2646019	-	229	188581688	-	Mpop_2436	-	multiple antibiotic resistance (MarC)-related protein
2403	 73.17	0	2646059..2646811	-	250	188581689	-	Mpop_2437	-	Methyltransferase type 11
2404	 71.03	0	2647062..2647841	+	259	188581690	-	Mpop_2438	-	hydroxyacylglutathione hydrolase
2405	 66.67	0	2647995..2648147	+	50	188581691	-	Mpop_2439	-	hypothetical protein
2406	 69.97	0	2648144..2649142	+	332	188581692	-	Mpop_2440	-	tyrosine recombinase XerD
2407	 71.53	0	2649302..2650513	+	403	188581693	-	Mpop_2441	-	diguanylate cyclase
2408	 73.44	0	2650609..2652837	+	742	188581694	-	Mpop_2442	-	glycoside hydrolase family 3 domain protein
2409	 67.33	0	2652844..2654046	-	400	188581695	-	Mpop_2443	-	binding-protein-dependent transport systems inner membrane component
2410	 70.75	0	2654094..2654558	-	154	188581696	-	Mpop_2444	-	hypothetical protein
2411	 69.62	0	2654617..2655801	-	394	188581697	-	Mpop_2445	-	aminotransferase class I and II
2412	 69.26	0	2656183..2656413	+	76	188581698	-	Mpop_2446	-	hypothetical protein
2413	 71.06	0	2656541..2657929	+	462	188581699	-	Mpop_2447	-	efflux transporter, RND family, MFP subunit
2414	 68.10	0	2657942..2661079	+	1045	188581700	-	Mpop_2448	-	acriflavin resistance protein
2415	 68.69	0	2661076..2664390	+	1104	188581701	-	Mpop_2449	-	acriflavin resistance protein
2416	 72.29	0	2664404..2665951	+	515	188581702	-	Mpop_2450	-	RND efflux system, outer membrane lipoprotein, NodT family
2417	 67.78	0	2666074..2667597	+	507	188581703	-	Mpop_2451	-	glucose-6-phosphate 1-dehydrogenase
2418	 70.45	0	2667659..2668768	-	369	188581704	-	Mpop_2452	-	3-isopropylmalate dehydrogenase
2419	 71.47	0	2668914..2669225	-	103	188581705	-	Mpop_2453	-	hypothetical protein
2420	 75.18	+1	2669467..2670993	+	508	188581706	-	Mpop_2454	-	hypothetical protein
2421	 71.28	0	2671207..2672895	+	562	188581707	-	Mpop_2455	-	thiamine pyrophosphate protein TPP binding domain protein
2422	 73.29	0	2672892..2673329	+	145	188581708	-	Mpop_2456	-	putative thiol-disulphide oxidoreductase DCC
2423	 72.48	0	2673336..2674298	-	320	188581709	-	Mpop_2457	-	Polyprenyl synthetase
2424	 70.77	0	2674341..2675120	+	259	188581710	-	Mpop_2458	-	monofunctional biosynthetic peptidoglycan transglycosylase
2425	 66.81	0	2675124..2676527	-	467	188581711	-	Mpop_2459	-	Deoxyribodipyrimidine photo-lyase
2426	 69.91	0	2677066..2678175	-	369	188581712	-	Mpop_2460	-	TRAP dicarboxylate transporter- DctP subunit
2427	 71.01	0	2678295..2678870	+	191	188581713	-	Mpop_2461	-	protein tyrosine phosphatase
2428	 69.88	0	2678879..2680000	-	373	188581714	-	Mpop_2462	-	Extracellular ligand-binding receptor
2429	 71.78	0	2680258..2681430	-	390	188581715	-	Mpop_2463	-	polysaccharide export protein
2430	 71.86	0	2681613..2683094	-	493	188581716	-	Mpop_2464	-	sulfatase
2431	 73.94	+1	2683101..2685053	-	650	188581717	-	Mpop_2465	-	Capsule polysaccharide biosynthesis protein
2432	 69.42	0	2685401..2686708	+	435	188581718	-	Mpop_2466	-	Capsule polysaccharide biosynthesis protein
2433	 73.70	0	2686779..2687546	+	255	188581719	-	Mpop_2467	-	short-chain dehydrogenase/reductase SDR
2434	 72.71	0	2687546..2688406	+	286	188581720	-	Mpop_2468	-	formyl transferase domain protein
2435	 67.37	0	2688513..2689793	-	426	188581721	-	Mpop_2469	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2436	 67.21	0	2690214..2690762	+	182	188581722	-	Mpop_2470	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
2437	 65.20	-1	2690797..2692089	+	430	188581723	-	Mpop_2471	-	Cytochrome b/b6 domain
2438	 67.75	0	2692111..2693034	+	307	188581724	-	Mpop_2472	-	cytochrome c1
2439	 68.68	0	2693031..2694374	-	447	188581725	-	Mpop_2473	-	transposase IS4 family protein
2440	 69.75	0	2694831..2695706	+	291	188581726	-	Mpop_2475	-	methylthioadenosine phosphorylase
2441	 69.70	0	2695812..2696075	-	87	188581727	-	Mpop_2476	-	hypothetical protein
2442	 67.55	0	2696111..2697016	-	301	188581728	-	Mpop_2477	-	metallophosphoesterase
2443	 65.31	-1	2697206..2697793	+	195	188581729	-	Mpop_2478	-	Imidazoleglycerol-phosphate dehydratase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.