IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2287	 73.83	+1	2477944..2478264	-	106	188581573	-	Mpop_2321	-	hypothetical protein
2288	 67.06	0	2478724..2479731	+	335	188581574	-	Mpop_2322	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2289	 70.52	0	2479842..2480360	+	172	188581575	-	Mpop_2323	-	hypothetical protein
2290	 70.32	0	2480380..2481582	+	400	188581576	-	Mpop_2324	-	Phosphoglycerate kinase
2291	 66.85	0	2481738..2482805	+	355	188581577	-	Mpop_2325	-	fructose-bisphosphate aldolase, class II, Calvin cycle subtype
2292	 74.74	+1	2482812..2483480	+	222	188581578	-	Mpop_2326	-	thiamine monophosphate synthase
2293	 71.63	0	2483477..2484625	+	382	188581579	-	Mpop_2327	-	Sel1 domain protein repeat-containing protein
2294	 70.51	0	2484764..2486167	+	467	188581580	-	Mpop_2328	-	amino acid permease-associated region
2295	 75.13	+1	2486168..2487691	-	507	188581581	-	Mpop_2329	-	carbohydrate kinase, YjeF related protein
2296	 63.13	-1	2487876..2488214	+	112	188581582	-	Mpop_2330	-	nitrogen regulatory protein P-II
2297	 68.28	0	2488314..2489243	+	309	188581583	-	Mpop_2331	-	Glutaminase
2298	 65.04	-1	2489565..2490611	-	348	188581584	-	Mpop_2332	-	Glutamate--ammonia ligase
2299	 63.62	-1	2491199..2492608	+	469	188581585	-	Mpop_2333	-	glutamine synthetase, type I
2300	 66.25	0	2492764..2494671	+	635	188581586	-	Mpop_2334	-	diguanylate cyclase/phosphodiesterase
2301	 69.78	0	2494735..2495313	+	192	188581587	-	Mpop_2335	-	NADPH-dependent FMN reductase
2302	 71.39	0	2495387..2495725	+	112	188581588	-	Mpop_2336	-	hypothetical protein
2303	 71.31	0	2495881..2498268	+	795	188581589	-	Mpop_2337	-	ribonuclease R
2304	 69.18	0	2498346..2498783	+	145	188581590	-	Mpop_2338	-	protein of unknown function DUF983
2305	 71.68	0	2498785..2499522	+	245	188581591	-	Mpop_2339	-	NUDIX hydrolase
2306	 70.03	0	2499656..2501620	+	654	188581592	-	Mpop_2340	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
2307	 70.11	0	2501633..2502502	-	289	188581593	-	Mpop_2341	-	hypothetical protein
2308	 72.46	0	2502509..2503579	-	356	188581594	-	Mpop_2342	-	protein of unknown function DUF1730
2309	 68.69	0	2503684..2504376	-	230	188581595	-	Mpop_2343	-	Glutathione S-transferase domain
2310	 64.32	-1	2504604..2505455	+	283	188581596	-	Mpop_2344	-	undecaprenol kinase
2311	 72.77	0	2505604..2507421	+	605	188581597	-	Mpop_2345	-	Methylmalonyl-CoA mutase
2312	 71.25	0	2507535..2507927	+	130	188581598	-	Mpop_2346	-	hypothetical protein
2313	 71.58	0	2508105..2508572	+	155	188581599	-	Mpop_2347	-	hypothetical protein
2314	 69.39	0	2508593..2509033	-	146	188581600	-	Mpop_2348	-	hypothetical protein
2315	 45.76	-2	2509675..2510382	+	235	188581601	-	Mpop_2349	-	hypothetical protein
2316	 49.39	-2	2510481..2511551	+	356	188581602	-	Mpop_2350	-	hypothetical protein
2317	 68.66	0	2511934..2512485	+	183	188581603	-	Mpop_2351	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2318	 69.22	0	2512603..2513661	+	352	188581604	-	Mpop_2352	-	dTDP-glucose 4,6-dehydratase
2319	 73.96	+1	2513667..2514557	+	296	188581605	-	Mpop_2353	-	dTDP-4-dehydrorhamnose reductase
2320	 67.45	0	2514574..2515464	+	296	188581606	-	Mpop_2354	-	glucose-1-phosphate thymidylyltransferase
2321	 75.59	+1	2515489..2516127	-	212	188581607	-	Mpop_2355	-	hypothetical protein
2322	 69.05	0	2516207..2517088	-	293	188581608	-	Mpop_2356	-	secretion protein HlyD family protein
2323	 72.16	0	2517101..2519158	-	685	188581609	-	Mpop_2357	-	SecA DEAD domain protein
2324	 70.48	0	2519151..2521298	-	715	188581610	-	Mpop_2358	-	peptidase, M50 family
2325	 72.19	0	2521310..2523193	-	627	188581611	-	Mpop_2359	-	putative phytochrome sensor protein
2326	 67.68	0	2523289..2523585	-	98	188581612	-	Mpop_2360	-	hypothetical protein
2327	 74.06	+1	2523996..2525009	+	337	188581613	-	Mpop_2361	-	Methyltransferase type 12
2328	 76.23	+1	2525006..2525674	+	222	188581614	-	Mpop_2362	-	hypothetical protein
2329	 75.22	+1	2525679..2528087	+	802	188581615	-	Mpop_2363	-	tryptophan halogenase
2330	 68.15	0	2528084..2528959	+	291	188581616	-	Mpop_2364	-	hypothetical protein
2331	 68.60	0	2528977..2529909	+	310	188581617	-	Mpop_2365	-	Radical SAM domain protein
2332	 69.15	0	2529925..2530932	-	335	188581618	-	Mpop_2366	-	transcriptional regulator, AraC family
2333	 65.92	0	2531795..2532595	+	266	188581619	-	Mpop_2367	-	SapC family protein
2334	 70.13	0	2532777..2577266	+	14829	188581620	-	Mpop_2368	-	GLUG domain protein
2335	 73.45	0	2577404..2578906	-	500	188581621	-	Mpop_2369	-	multicopper oxidase type 3
2336	 66.88	0	2579205..2580641	+	478	188581622	-	Mpop_2370	-	trigger factor
2337	 66.51	0	2580777..2581403	+	208	188581623	-	Mpop_2371	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2338	 65.72	0	2581649..2582920	+	423	188581624	-	Mpop_2372	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
2339	 65.72	0	2583188..2585611	+	807	188581625	-	Mpop_2373	-	ATP-dependent protease La
2340	 65.74	0	2586121..2586228	+	35	188581626	-	Mpop_2374	-	hypothetical protein
2341	 68.40	0	2586262..2586492	-	76	188581627	-	Mpop_2375	-	hypothetical protein
2342	 70.78	0	2586823..2588061	+	412	188581628	-	Mpop_2376	-	glycosyl transferase group 1
2343	 70.26	0	2588073..2589017	-	314	188581629	-	Mpop_2377	-	hypothetical protein
2344	 73.00	0	2589014..2590039	-	341	188581630	-	Mpop_2378	-	methyltransferase small
2345	 70.50	0	2590042..2590797	-	251	188581631	-	Mpop_2379	-	Protein of unknown function YqcI/YcgG
2346	 67.67	0	2591072..2591668	-	198	188581632	-	Mpop_2380	-	hypothetical protein
2347	 73.10	0	2591860..2593881	+	673	188581633	-	Mpop_2381	-	oligopeptide transporter, OPT family
2348	 59.62	-2	2593950..2594744	+	264	188581634	-	Mpop_2382	-	ABC-2 type transporter
2349	 67.09	0	2595139..2595843	-	234	188581635	-	Mpop_2383	-	hypothetical protein
2350	 61.71	-1	2595836..2596057	-	73	188581636	-	Mpop_2384	-	hypothetical protein
2351	 65.83	0	2596135..2597091	-	318	188581637	-	Mpop_2385	-	hypothetical protein
2352	 66.42	0	2597091..2597489	-	132	188581638	-	Mpop_2386	-	hypothetical protein
2353	 64.89	-1	2597482..2597874	-	130	188581639	-	Mpop_2387	-	hypothetical protein
2354	 66.31	0	2597911..2598192	-	93	188581640	-	Mpop_2388	-	hypothetical protein
2355	 65.93	0	2598467..2599141	-	224	188581641	-	Mpop_2389	-	Resolvase domain
2356	 68.00	0	2599500..2600324	+	274	188581642	-	Mpop_2390	-	transposase IS4 family protein
2357	 59.18	-2	2600366..2600512	-	48	188581643	-	Mpop_2391	-	hypothetical protein
2358	 59.26	-2	2600715..2601173	-	152	188581644	-	Mpop_2392	-	hypothetical protein
2359	 64.56	-1	2601328..2601564	-	78	188581645	-	Mpop_2393	-	hypothetical protein
2360	 64.76	-1	2601848..2603056	+	402	188581646	-	Mpop_2394	-	transposase mutator type
2361	 65.94	0	2603270..2604640	-	456	188581647	-	Mpop_2395	-	integrase family protein
2362	 72.15	0	2605001..2605711	-	236	188581648	-	Mpop_2396	-	hypothetical protein
2363	 69.02	0	2605948..2607138	+	396	188581649	-	Mpop_2397	-	ribonuclease BN
2364	 71.28	0	2607667..2608056	-	129	188581650	-	Mpop_2398	-	hypothetical protein
2365	 68.35	0	2608552..2611695	+	1047	188581651	-	Mpop_2399	-	DNA polymerase I
2366	 69.98	0	2612038..2612700	-	220	188581652	-	Mpop_2400	-	Deoxyribonuclease V
2367	 67.85	0	2612714..2613811	-	365	188581653	-	Mpop_2401	-	GTP-binding protein YchF
2368	 69.19	0	2613891..2614523	-	210	188581654	-	Mpop_2402	-	Aminoacyl-tRNA hydrolase
2369	 69.58	0	2614627..2615313	-	228	188581655	-	Mpop_2403	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
2370	 67.70	0	2615479..2615961	-	160	188581656	-	Mpop_2404	-	hypothetical protein
2371	 57.95	-2	2616343..2616537	+	64	188581657	-	Mpop_2405	-	Flp/Fap pilin component
2372	 62.24	-1	2616764..2617282	+	172	188581658	-	Mpop_2406	-	peptidase A24A prepilin type IV
2373	 69.86	0	2617490..2618272	+	260	188581659	-	Mpop_2407	-	Flp pilus assembly protein CpaB
2374	 67.99	0	2618284..2619792	+	502	188581660	-	Mpop_2408	-	type II and III secretion system protein
2375	 71.91	0	2619818..2620561	+	247	188581661	-	Mpop_2409	-	pilus (Caulobacter type) biogenesis lipoprotein CpaD
2376	 69.24	0	2620649..2621893	+	414	188581662	-	Mpop_2410	-	response regulator receiver protein
2377	 68.31	0	2621941..2623398	+	485	188581663	-	Mpop_2411	-	type II secretion system protein E
2378	 67.18	0	2623395..2624366	+	323	188581664	-	Mpop_2412	-	type II secretion system protein
2379	 67.28	0	2624566..2625537	+	323	188581665	-	Mpop_2413	-	type II secretion system protein
2380	 71.77	0	2625639..2626637	+	332	188581666	-	Mpop_2414	-	MaoC domain protein dehydratase
2381	 71.97	0	2626634..2627896	+	420	188581667	-	Mpop_2415	-	major facilitator superfamily MFS_1
2382	 70.66	0	2628037..2628462	+	141	188581668	-	Mpop_2416	-	OsmC family protein
2383	 70.27	0	2628545..2629126	-	193	188581669	-	Mpop_2417	-	CoA-binding domain protein
2384	 71.53	0	2629153..2629584	+	143	188581670	-	Mpop_2418	-	thioesterase superfamily protein
2385	 70.39	0	2629609..2630925	-	438	188581671	-	Mpop_2419	-	major facilitator superfamily MFS_1
2386	 69.11	0	2631294..2632892	+	532	188581672	-	Mpop_2420	-	diguanylate cyclase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.