IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2199	 69.06	0	2385695..2386654	+	319	188581485	-	Mpop_2233	-	GTP-binding protein Era
2200	 74.76	+1	2386861..2387787	+	308	188581486	-	Mpop_2234	-	methyltransferase small
2201	 71.74	0	2387818..2388546	+	242	188581487	-	Mpop_2235	-	pseudouridine synthase
2202	 70.34	0	2388551..2389231	-	226	188581488	-	Mpop_2236	-	hypothetical protein
2203	 72.98	0	2389285..2390076	+	263	188581489	-	Mpop_2237	-	hypothetical protein
2204	 64.05	-1	2390287..2390592	+	101	188581490	-	Mpop_2238	-	hypothetical protein
2205	 70.02	0	2390706..2392646	-	646	188581491	-	Mpop_2239	-	K potassium transporter
2206	 73.73	+1	2392748..2393398	-	216	188581492	-	Mpop_2240	-	hypothetical protein
2207	 73.07	0	2393426..2394034	-	202	188581493	-	Mpop_2241	-	NUDIX hydrolase
2208	 70.10	0	2394188..2395876	-	562	188581494	-	Mpop_2242	-	methyl-accepting chemotaxis sensory transducer
2209	 75.83	+1	2396185..2397384	-	399	188581495	-	Mpop_2243	-	protein of unknown function DUF610 YibQ
2210	 66.29	0	2397536..2398858	-	440	188581496	-	Mpop_2244	-	carboxyl-terminal protease
2211	 72.33	0	2398858..2400234	-	458	188581497	-	Mpop_2245	-	Peptidase M23
2212	 73.90	+1	2400231..2400728	-	165	188581498	-	Mpop_2246	-	protein of unknown function DUF163
2213	 72.08	0	2400972..2402282	+	436	188581499	-	Mpop_2247	-	General substrate transporter
2214	 68.17	0	2402589..2404583	+	664	188581500	-	Mpop_2248	-	diguanylate cyclase/phosphodiesterase
2215	 72.09	0	2404635..2405261	-	208	188581501	-	Mpop_2249	-	DSBA oxidoreductase
2216	 66.34	0	2405432..2406673	+	413	188581502	-	Mpop_2250	-	Argininosuccinate synthase
2217	 68.17	0	2406925..2407590	-	221	188581503	-	Mpop_2251	-	hypothetical protein
2218	 71.08	0	2407688..2408389	-	233	188581504	-	Mpop_2252	-	phosphoglycolate phosphatase
2219	 74.56	+1	2408586..2409092	+	168	188581505	-	Mpop_2253	-	hypothetical protein
2220	 73.84	+1	2409259..2409969	+	236	188581506	-	Mpop_2254	-	ribose 5-phosphate isomerase
2221	 70.02	0	2410012..2410608	+	198	188581507	-	Mpop_2255	-	hypothetical protein
2222	 75.93	+1	2410605..2411834	+	409	188581508	-	Mpop_2256	-	O-antigen polymerase
2223	 71.31	0	2411831..2413231	+	466	188581509	-	Mpop_2257	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
2224	 67.04	0	2413410..2414210	-	266	188581510	-	Mpop_2258	-	hypothetical protein
2225	 71.13	0	2414544..2415953	-	469	188581511	-	Mpop_2259	-	TRAP-type uncharacterized transport system periplasmic component-like protein
2226	 75.62	+1	2416049..2416651	+	200	188581512	-	Mpop_2260	-	regulatory protein RecX
2227	 66.20	0	2416737..2417168	+	143	188581513	-	Mpop_2261	-	OsmC family protein
2228	 69.31	0	2417272..2418483	+	403	188581514	-	Mpop_2262	-	Radical SAM domain protein
2229	 72.02	0	2418483..2419940	+	485	188581515	-	Mpop_2263	-	Uracil-DNA glycosylase superfamily
2230	 67.26	0	2420111..2421283	+	390	188581516	-	Mpop_2264	-	Alcohol dehydrogenase GroES domain protein
2231	 72.71	0	2421316..2421894	+	192	188581517	-	Mpop_2265	-	hypothetical protein
2232	 75.63	+1	2422022..2423683	-	553	188581518	-	Mpop_2266	-	conserved hypothetical proteinn
2233	 74.93	+1	2423680..2424792	-	370	188581519	-	Mpop_2267	-	hypothetical protein
2234	 76.06	+1	2424938..2425597	+	219	188581520	-	Mpop_2268	-	HpcH/HpaI aldolase
2235	 68.20	0	2425635..2426222	+	195	188581521	-	Mpop_2269	-	Glutathione S-transferase domain
2236	 70.30	0	2426228..2426833	-	201	188581522	-	Mpop_2270	-	hypothetical protein
2237	 73.50	0	2426844..2427428	-	194	188581523	-	Mpop_2271	-	nitroreductase
2238	 71.12	0	2427543..2428463	+	306	188581524	-	Mpop_2272	-	hypothetical protein
2239	 72.52	0	2428481..2428873	+	130	188581525	-	Mpop_2273	-	hypothetical protein
2240	 72.11	0	2429035..2429181	-	48	188581526	-	Mpop_2274	-	hypothetical protein
2241	 72.11	0	2429307..2430701	+	464	188581527	-	Mpop_2275	-	transcriptional regulator, GntR family with aminotransferase domain
2242	 67.80	0	2430724..2432751	-	675	188581528	-	Mpop_2276	-	threonyl-tRNA synthetase
2243	 72.31	0	2433072..2433833	-	253	188581529	-	Mpop_2277	-	hypothetical protein
2244	 74.73	+1	2433830..2434747	-	305	188581530	-	Mpop_2278	-	ROK family protein
2245	 66.59	0	2434755..2436143	-	462	188581531	-	Mpop_2279	-	sodium:dicarboxylate symporter
2246	 69.85	0	2436648..2439629	+	993	188581532	-	Mpop_2280	-	isoleucyl-tRNA synthetase
2247	 72.09	0	2439626..2440141	+	171	188581533	-	Mpop_2281	-	lipoprotein signal peptidase
2248	 72.15	0	2440310..2441002	+	230	188581534	-	Mpop_2282	-	hypothetical protein
2249	 71.08	0	2441150..2442532	+	460	188581535	-	Mpop_2283	-	peptidase M16 domain protein
2250	 71.42	0	2442603..2443886	+	427	188581536	-	Mpop_2284	-	peptidase M16 domain protein
2251	 71.06	0	2444189..2445121	+	310	188581537	-	Mpop_2285	-	Glyoxalase/bleomycin resistance protein/dioxygenase
2252	 64.34	-1	2445292..2446065	+	257	188581538	-	Mpop_2286	-	oxidoreductase FAD/NAD(P)-binding domain protein
2253	 73.16	0	2446113..2446790	+	225	188581539	-	Mpop_2287	-	dethiobiotin synthase
2254	 66.67	0	2446797..2447156	-	119	188581540	-	Mpop_2288	-	PRC-barrel
2255	 72.14	0	2447191..2447610	-	139	188581541	-	Mpop_2289	-	response regulator receiver protein
2256	 73.87	+1	2447803..2448552	+	249	188581542	-	Mpop_2290	-	protein of unknown function DUF1275
2257	 73.81	+1	2448570..2449577	+	335	188581543	-	Mpop_2291	-	WD-40 repeat protein
2258	 71.54	0	2449588..2449854	+	88	188581544	-	Mpop_2292	-	hypothetical protein
2259	 73.82	+1	2450020..2450550	+	176	188581545	-	Mpop_2293	-	hypothetical protein
2260	 73.15	0	2450679..2451911	+	410	188581546	-	Mpop_2294	-	hypothetical protein
2261	 69.84	0	2451916..2452356	-	146	188581547	-	Mpop_2295	-	protein of unknown function DUF1025
2262	 67.08	0	2452353..2453084	-	243	188581548	-	Mpop_2296	-	pyrimidine 5'-nucleotidase
2263	 68.12	0	2453174..2454070	-	298	188581549	-	Mpop_2297	-	acetylglutamate kinase
2264	 63.53	-1	2454424..2455665	+	413	188581550	-	Mpop_2298	-	filamentation induced by cAMP protein Fic
2265	 73.75	+1	2455839..2456078	+	79	188581551	-	Mpop_2299	-	hypothetical protein
2266	 71.15	0	2456086..2456865	-	259	188581552	-	Mpop_2300	-	MOSC domain containing protein
2267	 69.31	0	2457026..2457820	+	264	188581553	-	Mpop_2301	-	MOSC domain containing protein
2268	 68.95	0	2458042..2460666	+	874	188581554	-	Mpop_2302	-	ATP-dependent chaperone ClpB
2269	 69.48	0	2460834..2461508	+	224	188581555	-	Mpop_2303	-	metallophosphoesterase
2270	 68.61	0	2461649..2463088	+	479	188581556	-	Mpop_2304	-	short chain fatty acid transporter
2271	 67.38	0	2463391..2464092	+	233	188581557	-	Mpop_2305	-	OmpW family protein
2272	 76.08	+1	2464113..2464484	-	123	188581558	-	Mpop_2306	-	protein of unknown function DUF423
2273	 70.02	0	2464481..2465137	-	218	188581559	-	Mpop_2307	-	GTP-binding protein HSR1-related protein
2274	 65.75	0	2465343..2467187	-	614	188581560	-	Mpop_2308	-	60 kDa inner membrane insertion protein
2275	 73.92	+1	2467180..2467689	-	169	188581561	-	Mpop_2309	-	ribonuclease P protein component
2276	 71.85	0	2467762..2467896	-	44	188581562	-	Mpop_2310	-	ribosomal protein L34
2277	 68.35	0	2468542..2469075	+	177	188581563	-	Mpop_2311	-	protein of unknown function DUF1465
2278	 64.71	-1	2469373..2469627	-	84	188581564	-	Mpop_2312	-	ribosomal protein L31
2279	 72.93	0	2469927..2471795	+	622	188581565	-	Mpop_2313	-	lipid A ABC exporter family, fused ATPase and inner membrane subunits
2280	 72.02	0	2471869..2472876	+	335	188581566	-	Mpop_2314	-	Pyridoxal-5'-phosphate-dependent protein beta subunit
2281	 53.52	-2	2472890..2473543	-	217	188581567	-	Mpop_2315	-	hypothetical protein
2282	 71.70	0	2473719..2474732	-	337	188581568	-	Mpop_2316	-	OmpA/MotB domain protein
2283	 71.60	0	2474737..2475729	-	330	188581569	-	Mpop_2317	-	hypothetical protein
2284	 71.41	0	2475863..2476684	-	273	188581570	-	Mpop_2318	-	metallophosphoesterase
2285	 72.25	0	2476696..2477286	-	196	188581571	-	Mpop_2319	-	5-formyltetrahydrofolate cyclo-ligase
2286	 74.19	+1	2477549..2477920	-	123	188581572	-	Mpop_2320	-	protein of unknown function DUF710
2287	 73.83	+1	2477944..2478264	-	106	188581573	-	Mpop_2321	-	hypothetical protein
2288	 67.06	0	2478724..2479731	+	335	188581574	-	Mpop_2322	-	glyceraldehyde-3-phosphate dehydrogenase, type I
2289	 70.52	0	2479842..2480360	+	172	188581575	-	Mpop_2323	-	hypothetical protein
2290	 70.32	0	2480380..2481582	+	400	188581576	-	Mpop_2324	-	Phosphoglycerate kinase
2291	 66.85	0	2481738..2482805	+	355	188581577	-	Mpop_2325	-	fructose-bisphosphate aldolase, class II, Calvin cycle subtype
2292	 74.74	+1	2482812..2483480	+	222	188581578	-	Mpop_2326	-	thiamine monophosphate synthase
2293	 71.63	0	2483477..2484625	+	382	188581579	-	Mpop_2327	-	Sel1 domain protein repeat-containing protein
2294	 70.51	0	2484764..2486167	+	467	188581580	-	Mpop_2328	-	amino acid permease-associated region
2295	 75.13	+1	2486168..2487691	-	507	188581581	-	Mpop_2329	-	carbohydrate kinase, YjeF related protein
2296	 63.13	-1	2487876..2488214	+	112	188581582	-	Mpop_2330	-	nitrogen regulatory protein P-II
2297	 68.28	0	2488314..2489243	+	309	188581583	-	Mpop_2331	-	Glutaminase
2298	 65.04	-1	2489565..2490611	-	348	188581584	-	Mpop_2332	-	Glutamate--ammonia ligase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.