IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2123	 73.23	0	2307694..2308074	+	126	188581409	-	Mpop_2157	-	hypothetical protein
2124	 69.86	0	2308170..2309423	+	417	188581410	-	Mpop_2158	-	diguanylate cyclase
2125	 72.11	0	2309515..2310597	+	360	188581411	-	Mpop_2159	-	hypothetical protein
2126	 75.34	+1	2310783..2311970	-	395	188581412	-	Mpop_2160	-	monooxygenase FAD-binding
2127	 65.88	0	2311986..2312240	-	84	188581413	-	Mpop_2161	-	hypothetical protein
2128	 68.69	0	2312369..2313208	+	279	188581414	-	Mpop_2162	-	methionine aminopeptidase, type I
2129	 72.06	0	2313220..2313960	+	246	188581415	-	Mpop_2163	-	DNA repair protein RadC
2130	 66.60	0	2314218..2315657	+	479	188581416	-	Mpop_2164	-	protein of unknown function DUF404
2131	 66.24	0	2315765..2316709	+	314	188581417	-	Mpop_2165	-	protein of unknown function DUF403
2132	 66.40	0	2317335..2318822	+	495	188581418	-	Mpop_2166	-	General substrate transporter
2133	 73.81	+1	2319037..2319288	-	83	188581419	-	Mpop_2167	-	hypothetical protein
2134	 71.46	0	2319330..2319767	-	145	188581420	-	Mpop_2168	-	hypothetical protein
2135	 72.40	0	2319775..2320158	-	127	188581421	-	Mpop_2169	-	hypothetical protein
2136	 77.31	+1	2320282..2320638	+	118	188581422	-	Mpop_2170	-	hypothetical protein
2137	 69.56	0	2321201..2322064	+	287	188581423	-	Mpop_2171	-	transglutaminase domain protein
2138	 66.53	0	2322179..2322925	+	248	188581424	-	Mpop_2172	-	20S proteasome A and B subunits
2139	 71.53	0	2322933..2323652	-	239	188581425	-	Mpop_2173	-	Silent information regulator protein Sir2
2140	 69.96	0	2323661..2324875	-	404	188581426	-	Mpop_2174	-	protein of unknown function DUF21
2141	 70.31	0	2325350..2328337	+	995	188581427	-	Mpop_2175	-	glycosyl transferase family 2
2142	 67.53	0	2328500..2328730	+	76	188581428	-	Mpop_2176	-	hypothetical protein
2143	 72.62	0	2328850..2329101	-	83	188581429	-	Mpop_2177	-	hypothetical protein
2144	 67.24	0	2329622..2330842	+	406	188581430	-	Mpop_2178	-	diguanylate cyclase
2145	 69.97	0	2330942..2332426	-	494	188581431	-	Mpop_2179	-	protease Do
2146	 72.06	0	2332657..2333472	-	271	188581432	-	Mpop_2180	-	hypothetical protein
2147	 65.54	-1	2333655..2334008	-	117	188581433	-	Mpop_2181	-	phasin
2148	 74.55	+1	2334270..2335601	-	443	188581434	-	Mpop_2182	-	glycosyl transferase group 1
2149	 71.69	0	2335767..2337041	+	424	188581435	-	Mpop_2183	-	glycosyl transferase group 1
2150	 63.84	-1	2337129..2337305	+	58	188581436	-	Mpop_2184	-	hypothetical protein
2151	 71.94	0	2337322..2339655	-	777	188581437	-	Mpop_2185	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2152	 69.69	0	2339879..2341567	-	562	188581438	-	Mpop_2186	-	acyl-CoA dehydrogenase domain protein
2153	 72.95	0	2341739..2342629	-	296	188581439	-	Mpop_2187	-	protein of unknown function DUF6 transmembrane
2154	 69.60	0	2342728..2343681	+	317	188581440	-	Mpop_2188	-	ribonuclease BN
2155	 72.86	0	2343596..2344645	-	349	188581441	-	Mpop_2189	-	hypothetical protein
2156	 69.50	0	2344724..2346136	-	470	188581442	-	Mpop_2190	-	sulfate adenylyltransferase, large subunit
2157	 67.63	0	2346136..2347065	-	309	188581443	-	Mpop_2191	-	sulfate adenylyltransferase, small subunit
2158	 71.60	0	2347065..2347874	-	269	188581444	-	Mpop_2192	-	adenylylsulfate reductase, thioredoxin dependent
2159	 66.27	0	2348128..2348631	+	167	188581445	-	Mpop_2193	-	transcriptional regulator, AsnC family
2160	 69.85	0	2348732..2350519	+	595	188581446	-	Mpop_2194	-	flavodoxin/nitric oxide synthase
2161	 69.17	0	2350712..2352550	+	612	188581447	-	Mpop_2195	-	sulfite reductase (NADPH) hemoprotein, beta-component
2162	 72.03	0	2352619..2353476	-	285	188581448	-	Mpop_2196	-	pantoate--beta-alanine ligase
2163	 75.63	+1	2353555..2353911	-	118	188581449	-	Mpop_2197	-	hypothetical protein
2164	 66.67	0	2353975..2354580	-	201	188581450	-	Mpop_2198	-	transcriptional regulator, XRE family
2165	 63.74	-1	2354688..2355746	-	352	188581451	-	Mpop_2199	-	hypothetical protein
2166	 69.20	0	2356099..2356650	-	183	188581452	-	Mpop_2200	-	single-strand binding protein
2167	 70.11	0	2356854..2357870	-	338	188581453	-	Mpop_2201	-	Alcohol dehydrogenase zinc-binding domain protein
2168	 74.51	+1	2357975..2358382	+	135	188581454	-	Mpop_2202	-	conserved hypothetical protein; putative secreted protein
2169	 73.99	+1	2358441..2358986	-	181	188581455	-	Mpop_2203	-	hypothetical protein
2170	 71.61	0	2359229..2359996	+	255	188581456	-	Mpop_2204	-	hypothetical protein
2171	 73.10	0	2360079..2361197	-	372	188581457	-	Mpop_2205	-	NADH:flavin oxidoreductase/NADH oxidase
2172	 68.38	0	2361379..2362371	+	330	188581458	-	Mpop_2206	-	glutathione S-transferase domain
2173	 69.34	0	2362445..2363005	+	186	188581459	-	Mpop_2207	-	hypothetical protein
2174	 70.87	0	2363136..2364038	+	300	188581460	-	Mpop_2208	-	Thioredoxin domain
2175	 68.76	0	2364124..2364792	+	222	188581461	-	Mpop_2209	-	peptidase S16 lon domain protein
2176	 66.67	0	2364861..2365067	+	68	188581462	-	Mpop_2210	-	protein of unknown function DUF343
2177	 73.25	0	2365188..2366144	-	318	188581463	-	Mpop_2211	-	import inner membrane translocase subunit Tim44
2178	 74.03	+1	2366308..2367420	-	370	188581464	-	Mpop_2212	-	PAS/PAC sensor signal transduction histidine kinase
2179	 71.79	0	2367548..2368249	-	233	188581465	-	Mpop_2213	-	transglutaminase family protein cysteine peptidase BTLCP
2180	 70.49	0	2368455..2369108	-	217	188581466	-	Mpop_2214	-	transglutaminase family protein cysteine peptidase BTLCP
2181	 70.19	0	2369561..2370184	-	207	188581467	-	Mpop_2215	-	type IV pilus assembly PilZ
2182	 72.46	0	2370513..2371133	-	206	188581468	-	Mpop_2216	-	protein of unknown function DUF1457
2183	 71.15	0	2371376..2372200	+	274	188581469	-	Mpop_2217	-	Rhomboid family protein
2184	 67.34	0	2372445..2373329	+	294	188581470	-	Mpop_2218	-	hypothetical protein
2185	 67.82	0	2373671..2374102	+	143	188581471	-	Mpop_2219	-	putative signal-transduction protein with CBS domains
2186	 73.96	+1	2374140..2375195	-	351	188581472	-	Mpop_2220	-	Patatin
2187	 71.76	0	2375195..2375626	-	143	188581473	-	Mpop_2221	-	Phosphoribosyl-AMP cyclohydrolase
2188	 68.77	0	2375638..2376447	-	269	188581474	-	Mpop_2222	-	GTP cyclohydrolase I
2189	 70.78	0	2376670..2377131	+	153	188581475	-	Mpop_2223	-	nitrogen-fixing NifU domain protein
2190	 74.53	+1	2377137..2377454	+	105	188581476	-	Mpop_2224	-	protein of unknown function DUF37
2191	 64.97	-1	2377574..2378341	-	255	188581477	-	Mpop_2225	-	protein of unknown function UPF0005
2192	 73.16	0	2378559..2381147	-	862	188581478	-	Mpop_2226	-	protein of unknown function DUF214
2193	 68.59	0	2381263..2381574	-	103	188581479	-	Mpop_2227	-	transcriptional regulator, ArsR family
2194	 71.09	0	2381683..2382723	+	346	188581480	-	Mpop_2228	-	fatty acid desaturase
2195	 73.33	0	2382764..2383513	+	249	188581481	-	Mpop_2229	-	pyridoxal phosphate biosynthetic protein PdxJ
2196	 70.80	0	2383510..2383920	+	136	188581482	-	Mpop_2230	-	holo-acyl-carrier-protein synthase
2197	 65.18	-1	2384051..2384857	+	268	188581483	-	Mpop_2231	-	signal peptidase I
2198	 73.02	0	2384919..2385689	+	256	188581484	-	Mpop_2232	-	Ribonuclease III
2199	 69.06	0	2385695..2386654	+	319	188581485	-	Mpop_2233	-	GTP-binding protein Era
2200	 74.76	+1	2386861..2387787	+	308	188581486	-	Mpop_2234	-	methyltransferase small
2201	 71.74	0	2387818..2388546	+	242	188581487	-	Mpop_2235	-	pseudouridine synthase
2202	 70.34	0	2388551..2389231	-	226	188581488	-	Mpop_2236	-	hypothetical protein
2203	 72.98	0	2389285..2390076	+	263	188581489	-	Mpop_2237	-	hypothetical protein
2204	 64.05	-1	2390287..2390592	+	101	188581490	-	Mpop_2238	-	hypothetical protein
2205	 70.02	0	2390706..2392646	-	646	188581491	-	Mpop_2239	-	K potassium transporter
2206	 73.73	+1	2392748..2393398	-	216	188581492	-	Mpop_2240	-	hypothetical protein
2207	 73.07	0	2393426..2394034	-	202	188581493	-	Mpop_2241	-	NUDIX hydrolase
2208	 70.10	0	2394188..2395876	-	562	188581494	-	Mpop_2242	-	methyl-accepting chemotaxis sensory transducer
2209	 75.83	+1	2396185..2397384	-	399	188581495	-	Mpop_2243	-	protein of unknown function DUF610 YibQ
2210	 66.29	0	2397536..2398858	-	440	188581496	-	Mpop_2244	-	carboxyl-terminal protease
2211	 72.33	0	2398858..2400234	-	458	188581497	-	Mpop_2245	-	Peptidase M23
2212	 73.90	+1	2400231..2400728	-	165	188581498	-	Mpop_2246	-	protein of unknown function DUF163
2213	 72.08	0	2400972..2402282	+	436	188581499	-	Mpop_2247	-	General substrate transporter
2214	 68.17	0	2402589..2404583	+	664	188581500	-	Mpop_2248	-	diguanylate cyclase/phosphodiesterase
2215	 72.09	0	2404635..2405261	-	208	188581501	-	Mpop_2249	-	DSBA oxidoreductase
2216	 66.34	0	2405432..2406673	+	413	188581502	-	Mpop_2250	-	Argininosuccinate synthase
2217	 68.17	0	2406925..2407590	-	221	188581503	-	Mpop_2251	-	hypothetical protein
2218	 71.08	0	2407688..2408389	-	233	188581504	-	Mpop_2252	-	phosphoglycolate phosphatase
2219	 74.56	+1	2408586..2409092	+	168	188581505	-	Mpop_2253	-	hypothetical protein
2220	 73.84	+1	2409259..2409969	+	236	188581506	-	Mpop_2254	-	ribose 5-phosphate isomerase
2221	 70.02	0	2410012..2410608	+	198	188581507	-	Mpop_2255	-	hypothetical protein
2222	 75.93	+1	2410605..2411834	+	409	188581508	-	Mpop_2256	-	O-antigen polymerase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.