IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2058	 63.36	-1	2252833..2253528	-	231	188581344	-	Mpop_2092	-	hypothetical protein
2059	 72.46	0	2253667..2254443	-	258	188581345	-	Mpop_2093	-	Creatininase
2060	 69.98	0	2254630..2255505	+	291	188581346	-	Mpop_2094	-	diguanylate cyclase with PAS/PAC sensor
2061	 75.06	+1	2255489..2255905	-	138	188581347	-	Mpop_2095	-	hypothetical protein
2062	 64.71	-1	2256053..2256256	-	67	188581348	-	Mpop_2096	-	CsbD family protein
2063	 67.81	0	2256561..2257871	+	436	188581349	-	Mpop_2097	-	major facilitator superfamily MFS_1
2064	 70.33	0	2257883..2258647	+	254	188581350	-	Mpop_2098	-	fumarylacetoacetate (FAA) hydrolase
2065	 68.75	0	2258766..2259773	+	335	188581351	-	Mpop_2099	-	2-dehydropantoate 2-reductase
2066	 70.15	0	2259776..2261356	+	526	188581352	-	Mpop_2100	-	AMP-dependent synthetase and ligase
2067	 68.09	0	2261623..2261904	-	93	188581353	-	Mpop_2101	-	hypothetical protein
2068	 68.86	0	2261905..2262132	-	75	188581354	-	Mpop_2102	-	hypothetical protein
2069	 74.45	+1	2262277..2262777	-	166	188581355	-	Mpop_2103	-	hypothetical protein
2070	 73.74	+1	2262785..2263999	-	404	188581356	-	Mpop_2104	-	major facilitator superfamily MFS_1
2071	 74.86	+1	2264108..2265010	+	300	188581357	-	Mpop_2105	-	transcriptional regulator, LysR family
2072	 64.87	-1	2264994..2265383	-	129	188581358	-	Mpop_2106	-	4-oxalocrotonate tautomerase
2073	 69.81	0	2265561..2266451	+	296	188581359	-	Mpop_2107	-	Citryl-CoA lyase
2074	 71.65	0	2266520..2266900	-	126	188581360	-	Mpop_2108	-	hypothetical protein
2075	 68.59	0	2267136..2267810	-	224	188581361	-	Mpop_2109	-	HAD-superfamily hydrolase, subfamily IA, variant 3
2076	 70.38	0	2267954..2269381	+	475	188581362	-	Mpop_2110	-	hypothetical protein
2077	 72.01	0	2269393..2270028	+	211	188581363	-	Mpop_2111	-	hypothetical protein
2078	 73.25	0	2270127..2271068	-	313	188581364	-	Mpop_2112	-	transcriptional regulator, LysR family
2079	 72.58	0	2271208..2272137	+	309	188581365	-	Mpop_2113	-	Glyoxalase/bleomycin resistance protein/dioxygenase
2080	 73.63	0	2272218..2272892	+	224	188581366	-	Mpop_2114	-	phospholipase/Carboxylesterase
2081	 71.49	0	2272920..2273873	-	317	188581367	-	Mpop_2115	-	transcriptional regulator, MarR family with acetyltransferase activity
2082	 52.63	-2	2274252..2274479	+	75	188581368	-	Mpop_2116	-	hypothetical protein
2083	 72.84	0	2275029..2278508	+	1159	188581369	-	Mpop_2117	-	conserved hypothetical proteinn
2084	 66.67	0	2278898..2279269	+	123	188581370	-	Mpop_2118	-	ribosomal protein S12
2085	 68.58	0	2279394..2279864	+	156	188581371	-	Mpop_2119	-	ribosomal protein S7
2086	 65.99	0	2279940..2282015	+	691	188581372	-	Mpop_2120	-	translation elongation factor G
2087	 66.41	0	2282068..2283258	+	396	188581373	-	Mpop_2121	-	translation elongation factor Tu
2088	 63.11	-1	2283346..2283654	+	102	188581374	-	Mpop_2122	-	ribosomal protein S10
2089	 67.88	0	2283705..2284445	+	246	188581375	-	Mpop_2123	-	ribosomal protein L3
2090	 66.83	0	2284445..2285065	+	206	188581376	-	Mpop_2124	-	ribosomal protein L4/L1e
2091	 61.95	-1	2285062..2285358	+	98	188581377	-	Mpop_2125	-	Ribosomal protein L25/L23
2092	 67.26	0	2285384..2286220	+	278	188581378	-	Mpop_2126	-	ribosomal protein L2
2093	 64.52	-1	2286226..2286504	+	92	188581379	-	Mpop_2127	-	ribosomal protein S19
2094	 67.19	0	2286506..2286889	+	127	188581380	-	Mpop_2128	-	ribosomal protein L22
2095	 68.27	0	2286900..2287646	+	248	188581381	-	Mpop_2129	-	ribosomal protein S3
2096	 67.63	0	2287680..2288093	+	137	188581382	-	Mpop_2130	-	ribosomal protein L16
2097	 65.28	-1	2288106..2288321	+	71	188581383	-	Mpop_2131	-	ribosomal protein L29
2098	 64.42	-1	2288333..2288599	+	88	188581384	-	Mpop_2132	-	ribosomal protein S17
2099	 65.15	-1	2289065..2290453	+	462	188581385	-	Mpop_2133	-	AAA ATPase central domain protein
2100	 72.98	0	2290620..2292251	-	543	188581386	-	Mpop_2134	-	hypothetical protein
2101	 62.80	-1	2292251..2292715	-	154	188581387	-	Mpop_2135	-	TadE family protein
2102	 69.93	0	2293293..2293751	-	152	188581388	-	Mpop_2136	-	NUDIX hydrolase
2103	 64.30	-1	2293995..2294459	-	154	188581389	-	Mpop_2137	-	transcriptional regulator, MarR family
2104	 66.91	0	2294753..2295169	-	138	188581390	-	Mpop_2138	-	ribosomal protein L17
2105	 65.78	0	2295412..2296431	-	339	188581391	-	Mpop_2139	-	DNA-directed RNA polymerase, alpha subunit
2106	 70.07	0	2296528..2297409	-	293	188581392	-	Mpop_2140	-	beta-lactamase domain protein
2107	 70.26	0	2297448..2297837	-	129	188581393	-	Mpop_2141	-	ribosomal protein S11
2108	 66.12	0	2298006..2298374	-	122	188581394	-	Mpop_2142	-	ribosomal protein S13
2109	 69.49	0	2298724..2299326	-	200	188581395	-	Mpop_2143	-	adenylate kinase
2110	 66.59	0	2299469..2300812	-	447	188581396	-	Mpop_2144	-	preprotein translocase, SecY subunit
2111	 69.61	0	2300927..2301436	-	169	188581397	-	Mpop_2145	-	ribosomal protein L15
2112	 68.21	0	2301450..2301644	-	64	188581398	-	Mpop_2146	-	ribosomal protein L30
2113	 71.33	0	2301656..2302234	-	192	188581399	-	Mpop_2147	-	ribosomal protein S5
2114	 69.42	0	2302325..2302687	-	120	188581400	-	Mpop_2148	-	ribosomal protein L18
2115	 65.73	0	2302700..2303233	-	177	188581401	-	Mpop_2149	-	ribosomal protein L6
2116	 68.18	0	2303250..2303645	-	131	188581402	-	Mpop_2150	-	ribosomal protein S8
2117	 65.03	-1	2303658..2303963	-	101	188581403	-	Mpop_2151	-	ribosomal protein S14
2118	 65.08	-1	2304006..2304572	-	188	188581404	-	Mpop_2152	-	ribosomal protein L5
2119	 64.76	-1	2304565..2304879	-	104	188581405	-	Mpop_2153	-	ribosomal protein L24
2120	 64.44	-1	2304879..2305238	-	119	188581406	-	Mpop_2154	-	ribosomal protein L14
2121	 72.05	0	2305650..2305946	-	98	188581407	-	Mpop_2155	-	hypothetical protein
2122	 72.10	0	2306225..2306758	-	177	188581408	-	Mpop_2156	-	nuclease (SNase domain protein)
2123	 73.23	0	2307694..2308074	+	126	188581409	-	Mpop_2157	-	hypothetical protein
2124	 69.86	0	2308170..2309423	+	417	188581410	-	Mpop_2158	-	diguanylate cyclase
2125	 72.11	0	2309515..2310597	+	360	188581411	-	Mpop_2159	-	hypothetical protein
2126	 75.34	+1	2310783..2311970	-	395	188581412	-	Mpop_2160	-	monooxygenase FAD-binding
2127	 65.88	0	2311986..2312240	-	84	188581413	-	Mpop_2161	-	hypothetical protein
2128	 68.69	0	2312369..2313208	+	279	188581414	-	Mpop_2162	-	methionine aminopeptidase, type I
2129	 72.06	0	2313220..2313960	+	246	188581415	-	Mpop_2163	-	DNA repair protein RadC
2130	 66.60	0	2314218..2315657	+	479	188581416	-	Mpop_2164	-	protein of unknown function DUF404
2131	 66.24	0	2315765..2316709	+	314	188581417	-	Mpop_2165	-	protein of unknown function DUF403
2132	 66.40	0	2317335..2318822	+	495	188581418	-	Mpop_2166	-	General substrate transporter
2133	 73.81	+1	2319037..2319288	-	83	188581419	-	Mpop_2167	-	hypothetical protein
2134	 71.46	0	2319330..2319767	-	145	188581420	-	Mpop_2168	-	hypothetical protein
2135	 72.40	0	2319775..2320158	-	127	188581421	-	Mpop_2169	-	hypothetical protein
2136	 77.31	+1	2320282..2320638	+	118	188581422	-	Mpop_2170	-	hypothetical protein
2137	 69.56	0	2321201..2322064	+	287	188581423	-	Mpop_2171	-	transglutaminase domain protein
2138	 66.53	0	2322179..2322925	+	248	188581424	-	Mpop_2172	-	20S proteasome A and B subunits
2139	 71.53	0	2322933..2323652	-	239	188581425	-	Mpop_2173	-	Silent information regulator protein Sir2
2140	 69.96	0	2323661..2324875	-	404	188581426	-	Mpop_2174	-	protein of unknown function DUF21
2141	 70.31	0	2325350..2328337	+	995	188581427	-	Mpop_2175	-	glycosyl transferase family 2
2142	 67.53	0	2328500..2328730	+	76	188581428	-	Mpop_2176	-	hypothetical protein
2143	 72.62	0	2328850..2329101	-	83	188581429	-	Mpop_2177	-	hypothetical protein
2144	 67.24	0	2329622..2330842	+	406	188581430	-	Mpop_2178	-	diguanylate cyclase
2145	 69.97	0	2330942..2332426	-	494	188581431	-	Mpop_2179	-	protease Do
2146	 72.06	0	2332657..2333472	-	271	188581432	-	Mpop_2180	-	hypothetical protein
2147	 65.54	-1	2333655..2334008	-	117	188581433	-	Mpop_2181	-	phasin
2148	 74.55	+1	2334270..2335601	-	443	188581434	-	Mpop_2182	-	glycosyl transferase group 1
2149	 71.69	0	2335767..2337041	+	424	188581435	-	Mpop_2183	-	glycosyl transferase group 1
2150	 63.84	-1	2337129..2337305	+	58	188581436	-	Mpop_2184	-	hypothetical protein
2151	 71.94	0	2337322..2339655	-	777	188581437	-	Mpop_2185	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2152	 69.69	0	2339879..2341567	-	562	188581438	-	Mpop_2186	-	acyl-CoA dehydrogenase domain protein
2153	 72.95	0	2341739..2342629	-	296	188581439	-	Mpop_2187	-	protein of unknown function DUF6 transmembrane
2154	 69.60	0	2342728..2343681	+	317	188581440	-	Mpop_2188	-	ribonuclease BN
2155	 72.86	0	2343596..2344645	-	349	188581441	-	Mpop_2189	-	hypothetical protein
2156	 69.50	0	2344724..2346136	-	470	188581442	-	Mpop_2190	-	sulfate adenylyltransferase, large subunit
2157	 67.63	0	2346136..2347065	-	309	188581443	-	Mpop_2191	-	sulfate adenylyltransferase, small subunit
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.