IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2029	 62.96	-1	2219662..2219877	-	71	188581315	-	Mpop_2062	-	hypothetical protein
2030	 71.08	0	2220013..2220873	-	286	188581316	-	Mpop_2063	-	serine O-acetyltransferase
2031	 69.22	0	2221174..2222073	-	299	188581317	-	Mpop_2064	-	transcriptional regulator, XRE family with shikimate kinase activity
2032	 71.57	0	2222356..2223987	-	543	188581318	-	Mpop_2065	-	extracellular solute-binding protein family 5
2033	 73.26	0	2223984..2226272	-	762	188581319	-	Mpop_2066	-	integral membrane sensor signal transduction histidine kinase
2034	 72.55	0	2226389..2226592	-	67	188581320	-	Mpop_2067	-	hypothetical protein
2035	 79.12	+2	2226604..2226876	-	90	188581321	-	Mpop_2068	-	hypothetical protein
2036	 69.06	0	2227060..2227935	-	291	188581322	-	Mpop_2069	-	two component transcriptional regulator, winged helix family
2037	 70.96	0	2228243..2230084	+	613	188581323	-	Mpop_2070	-	response regulator receiver sensor signal transduction histidine kinase
2038	 66.67	0	2230240..2230614	-	124	188581324	-	Mpop_2071	-	response regulator receiver protein
2039	 68.43	0	2230620..2233109	-	829	188581325	-	Mpop_2072	-	signal transduction histidine kinase
2040	 70.58	0	2233808..2234548	-	246	188581326	-	Mpop_2074	-	putative transcriptional regulator, Crp/Fnr family
2041	 74.92	+1	2234627..2235862	-	411	188581327	-	Mpop_2075	-	PepSY-associated TM helix domain protein
2042	 69.13	0	2235905..2238136	-	743	188581328	-	Mpop_2076	-	TonB-dependent siderophore receptor
2043	 68.35	0	2238914..2239921	+	335	188581329	-	Mpop_2077	-	hypothetical protein
2044	 73.25	0	2240168..2240668	+	166	188581330	-	Mpop_2078	-	hypothetical protein
2045	 69.47	0	2240823..2241428	+	201	188581331	-	Mpop_2079	-	oxidoreductase molybdopterin binding
2046	 72.78	0	2241442..2242161	+	239	188581332	-	Mpop_2080	-	Oxidoreductase FAD-binding domain protein
2047	 65.26	-1	2242270..2242482	+	70	188581333	-	Mpop_2081	-	hypothetical protein
2048	 64.94	-1	2242466..2242927	+	153	188581334	-	Mpop_2082	-	hypothetical protein
2049	 64.80	-1	2242960..2243334	-	124	188581335	-	Mpop_2083	-	hypothetical protein
2050	 69.29	0	2243504..2243770	-	88	188581336	-	Mpop_2084	-	hypothetical protein
2051	 72.54	0	2244136..2245497	+	453	188581337	-	Mpop_2085	-	3-phosphoshikimate 1-carboxyvinyltransferase
2052	 74.74	+1	2245494..2246162	+	222	188581338	-	Mpop_2086	-	cytidylate kinase
2053	 74.77	+1	2246253..2246585	-	110	188581339	-	Mpop_2087	-	protein of unknown function DUF167
2054	 70.00	0	2247094..2249196	+	700	188581340	-	Mpop_2088	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2055	 69.31	0	2249821..2251104	+	427	188581341	-	Mpop_2089	-	hypothetical protein
2056	 73.80	+1	2251164..2252438	+	424	188581342	-	Mpop_2090	-	glycosyl transferase family 28
2057	 63.77	-1	2252423..2252836	-	137	188581343	-	Mpop_2091	-	hypothetical protein
2058	 63.36	-1	2252833..2253528	-	231	188581344	-	Mpop_2092	-	hypothetical protein
2059	 72.46	0	2253667..2254443	-	258	188581345	-	Mpop_2093	-	Creatininase
2060	 69.98	0	2254630..2255505	+	291	188581346	-	Mpop_2094	-	diguanylate cyclase with PAS/PAC sensor
2061	 75.06	+1	2255489..2255905	-	138	188581347	-	Mpop_2095	-	hypothetical protein
2062	 64.71	-1	2256053..2256256	-	67	188581348	-	Mpop_2096	-	CsbD family protein
2063	 67.81	0	2256561..2257871	+	436	188581349	-	Mpop_2097	-	major facilitator superfamily MFS_1
2064	 70.33	0	2257883..2258647	+	254	188581350	-	Mpop_2098	-	fumarylacetoacetate (FAA) hydrolase
2065	 68.75	0	2258766..2259773	+	335	188581351	-	Mpop_2099	-	2-dehydropantoate 2-reductase
2066	 70.15	0	2259776..2261356	+	526	188581352	-	Mpop_2100	-	AMP-dependent synthetase and ligase
2067	 68.09	0	2261623..2261904	-	93	188581353	-	Mpop_2101	-	hypothetical protein
2068	 68.86	0	2261905..2262132	-	75	188581354	-	Mpop_2102	-	hypothetical protein
2069	 74.45	+1	2262277..2262777	-	166	188581355	-	Mpop_2103	-	hypothetical protein
2070	 73.74	+1	2262785..2263999	-	404	188581356	-	Mpop_2104	-	major facilitator superfamily MFS_1
2071	 74.86	+1	2264108..2265010	+	300	188581357	-	Mpop_2105	-	transcriptional regulator, LysR family
2072	 64.87	-1	2264994..2265383	-	129	188581358	-	Mpop_2106	-	4-oxalocrotonate tautomerase
2073	 69.81	0	2265561..2266451	+	296	188581359	-	Mpop_2107	-	Citryl-CoA lyase
2074	 71.65	0	2266520..2266900	-	126	188581360	-	Mpop_2108	-	hypothetical protein
2075	 68.59	0	2267136..2267810	-	224	188581361	-	Mpop_2109	-	HAD-superfamily hydrolase, subfamily IA, variant 3
2076	 70.38	0	2267954..2269381	+	475	188581362	-	Mpop_2110	-	hypothetical protein
2077	 72.01	0	2269393..2270028	+	211	188581363	-	Mpop_2111	-	hypothetical protein
2078	 73.25	0	2270127..2271068	-	313	188581364	-	Mpop_2112	-	transcriptional regulator, LysR family
2079	 72.58	0	2271208..2272137	+	309	188581365	-	Mpop_2113	-	Glyoxalase/bleomycin resistance protein/dioxygenase
2080	 73.63	0	2272218..2272892	+	224	188581366	-	Mpop_2114	-	phospholipase/Carboxylesterase
2081	 71.49	0	2272920..2273873	-	317	188581367	-	Mpop_2115	-	transcriptional regulator, MarR family with acetyltransferase activity
2082	 52.63	-2	2274252..2274479	+	75	188581368	-	Mpop_2116	-	hypothetical protein
2083	 72.84	0	2275029..2278508	+	1159	188581369	-	Mpop_2117	-	conserved hypothetical proteinn
2084	 66.67	0	2278898..2279269	+	123	188581370	-	Mpop_2118	-	ribosomal protein S12
2085	 68.58	0	2279394..2279864	+	156	188581371	-	Mpop_2119	-	ribosomal protein S7
2086	 65.99	0	2279940..2282015	+	691	188581372	-	Mpop_2120	-	translation elongation factor G
2087	 66.41	0	2282068..2283258	+	396	188581373	-	Mpop_2121	-	translation elongation factor Tu
2088	 63.11	-1	2283346..2283654	+	102	188581374	-	Mpop_2122	-	ribosomal protein S10
2089	 67.88	0	2283705..2284445	+	246	188581375	-	Mpop_2123	-	ribosomal protein L3
2090	 66.83	0	2284445..2285065	+	206	188581376	-	Mpop_2124	-	ribosomal protein L4/L1e
2091	 61.95	-1	2285062..2285358	+	98	188581377	-	Mpop_2125	-	Ribosomal protein L25/L23
2092	 67.26	0	2285384..2286220	+	278	188581378	-	Mpop_2126	-	ribosomal protein L2
2093	 64.52	-1	2286226..2286504	+	92	188581379	-	Mpop_2127	-	ribosomal protein S19
2094	 67.19	0	2286506..2286889	+	127	188581380	-	Mpop_2128	-	ribosomal protein L22
2095	 68.27	0	2286900..2287646	+	248	188581381	-	Mpop_2129	-	ribosomal protein S3
2096	 67.63	0	2287680..2288093	+	137	188581382	-	Mpop_2130	-	ribosomal protein L16
2097	 65.28	-1	2288106..2288321	+	71	188581383	-	Mpop_2131	-	ribosomal protein L29
2098	 64.42	-1	2288333..2288599	+	88	188581384	-	Mpop_2132	-	ribosomal protein S17
2099	 65.15	-1	2289065..2290453	+	462	188581385	-	Mpop_2133	-	AAA ATPase central domain protein
2100	 72.98	0	2290620..2292251	-	543	188581386	-	Mpop_2134	-	hypothetical protein
2101	 62.80	-1	2292251..2292715	-	154	188581387	-	Mpop_2135	-	TadE family protein
2102	 69.93	0	2293293..2293751	-	152	188581388	-	Mpop_2136	-	NUDIX hydrolase
2103	 64.30	-1	2293995..2294459	-	154	188581389	-	Mpop_2137	-	transcriptional regulator, MarR family
2104	 66.91	0	2294753..2295169	-	138	188581390	-	Mpop_2138	-	ribosomal protein L17
2105	 65.78	0	2295412..2296431	-	339	188581391	-	Mpop_2139	-	DNA-directed RNA polymerase, alpha subunit
2106	 70.07	0	2296528..2297409	-	293	188581392	-	Mpop_2140	-	beta-lactamase domain protein
2107	 70.26	0	2297448..2297837	-	129	188581393	-	Mpop_2141	-	ribosomal protein S11
2108	 66.12	0	2298006..2298374	-	122	188581394	-	Mpop_2142	-	ribosomal protein S13
2109	 69.49	0	2298724..2299326	-	200	188581395	-	Mpop_2143	-	adenylate kinase
2110	 66.59	0	2299469..2300812	-	447	188581396	-	Mpop_2144	-	preprotein translocase, SecY subunit
2111	 69.61	0	2300927..2301436	-	169	188581397	-	Mpop_2145	-	ribosomal protein L15
2112	 68.21	0	2301450..2301644	-	64	188581398	-	Mpop_2146	-	ribosomal protein L30
2113	 71.33	0	2301656..2302234	-	192	188581399	-	Mpop_2147	-	ribosomal protein S5
2114	 69.42	0	2302325..2302687	-	120	188581400	-	Mpop_2148	-	ribosomal protein L18
2115	 65.73	0	2302700..2303233	-	177	188581401	-	Mpop_2149	-	ribosomal protein L6
2116	 68.18	0	2303250..2303645	-	131	188581402	-	Mpop_2150	-	ribosomal protein S8
2117	 65.03	-1	2303658..2303963	-	101	188581403	-	Mpop_2151	-	ribosomal protein S14
2118	 65.08	-1	2304006..2304572	-	188	188581404	-	Mpop_2152	-	ribosomal protein L5
2119	 64.76	-1	2304565..2304879	-	104	188581405	-	Mpop_2153	-	ribosomal protein L24
2120	 64.44	-1	2304879..2305238	-	119	188581406	-	Mpop_2154	-	ribosomal protein L14
2121	 72.05	0	2305650..2305946	-	98	188581407	-	Mpop_2155	-	hypothetical protein
2122	 72.10	0	2306225..2306758	-	177	188581408	-	Mpop_2156	-	nuclease (SNase domain protein)
2123	 73.23	0	2307694..2308074	+	126	188581409	-	Mpop_2157	-	hypothetical protein
2124	 69.86	0	2308170..2309423	+	417	188581410	-	Mpop_2158	-	diguanylate cyclase
2125	 72.11	0	2309515..2310597	+	360	188581411	-	Mpop_2159	-	hypothetical protein
2126	 75.34	+1	2310783..2311970	-	395	188581412	-	Mpop_2160	-	monooxygenase FAD-binding
2127	 65.88	0	2311986..2312240	-	84	188581413	-	Mpop_2161	-	hypothetical protein
2128	 68.69	0	2312369..2313208	+	279	188581414	-	Mpop_2162	-	methionine aminopeptidase, type I
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.