IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1938	 72.62	0	2109631..2110638	-	335	188581224	-	Mpop_1971	-	Hsp33 protein
1939	 70.17	0	2110882..2112993	-	703	188581225	-	Mpop_1972	-	Carbohydrate-selective porin OprB
1940	 70.00	0	2113401..2113940	-	179	188581226	-	Mpop_1973	-	hypothetical protein
1941	 67.61	0	2114276..2114698	+	140	188581227	-	Mpop_1974	-	Nucleoside-diphosphate kinase
1942	 70.31	0	2114881..2115264	+	127	188581228	-	Mpop_1975	-	hypothetical protein
1943	 71.66	0	2115363..2116484	-	373	188581229	-	Mpop_1976	-	peptidase M48 Ste24p
1944	 66.98	0	2116492..2117781	-	429	188581230	-	Mpop_1977	-	hypothetical protein
1945	 64.96	-1	2118427..2118660	-	77	188581231	-	Mpop_1978	-	protein of unknown function DUF466
1946	 67.15	0	2118668..2120725	-	685	188581232	-	Mpop_1979	-	carbon starvation protein CstA
1947	 73.84	+1	2121022..2121648	-	208	188581233	-	Mpop_1980	-	protein of unknown function DUF477
1948	 71.10	0	2121638..2122426	-	262	188581234	-	Mpop_1981	-	protein of unknown function DUF477
1949	 67.61	0	2122466..2123101	-	211	188581235	-	Mpop_1982	-	LemA family protein
1950	 70.48	0	2123550..2123864	+	104	188581236	-	Mpop_1983	-	conserved hypothetical selenoprotein
1951	 72.41	0	2123964..2126105	+	713	188581237	-	Mpop_1984	-	signal transduction histidine kinase
1952	 70.85	0	2126116..2126952	-	278	188581238	-	Mpop_1985	-	2,5-didehydrogluconate reductase
1953	 70.13	0	2127068..2127847	-	259	188581239	-	Mpop_1986	-	transcriptional regulator, Crp/Fnr family
1954	 70.25	0	2127958..2129490	-	510	188581240	-	Mpop_1987	-	glycogen/starch synthase, ADP-glucose type
1955	 69.10	0	2129760..2131400	-	546	188581241	-	Mpop_1988	-	alpha amylase catalytic region
1956	 67.96	0	2131726..2134272	+	848	188581242	-	Mpop_1989	-	glycogen/starch/alpha-glucan phosphorylase
1957	 57.47	-2	2134516..2134863	+	115	188581243	-	Mpop_1990	-	hypothetical protein
1958	 73.99	+1	2134886..2135827	-	313	188581244	-	Mpop_1991	-	putative ferredoxin-NAD reductase component
1959	 74.36	+1	2135871..2136299	-	142	188581245	-	Mpop_1992	-	hypothetical protein
1960	 69.82	0	2136436..2139348	-	970	188581246	-	Mpop_1993	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1961	 72.81	0	2139631..2140656	+	341	188581247	-	Mpop_1994	-	glycosyl transferase family 4
1962	 75.43	+1	2140669..2141592	+	307	188581248	-	Mpop_1995	-	NAD-dependent epimerase/dehydratase
1963	 72.22	0	2141597..2142208	-	203	188581249	-	Mpop_1996	-	NAD(P)H dehydrogenase (quinone)
1964	 68.87	0	2142285..2142692	+	135	188581250	-	Mpop_1997	-	transcriptional regulator, HxlR family
1965	 71.78	0	2142712..2144685	-	657	188581251	-	Mpop_1998	-	polysaccharide biosynthesis protein CapD
1966	 72.54	0	2144788..2145639	-	283	188581252	-	Mpop_1999	-	protein of unknown function DUF1206
1967	 70.76	0	2145646..2145987	-	113	188581253	-	Mpop_2000	-	hypothetical protein
1968	 68.25	0	2146012..2146578	-	188	188581254	-	Mpop_2001	-	protein of unknown function DUF820
1969	 68.45	0	2146650..2147210	-	186	188581255	-	Mpop_2002	-	protein of unknown function DUF820
1970	 67.49	0	2147309..2148757	-	482	188581256	-	Mpop_2003	-	Homospermidine synthase
1971	 68.25	0	2149035..2149223	+	62	188581257	-	Mpop_2004	-	hypothetical protein
1972	 73.48	0	2149364..2149921	-	185	188581258	-	Mpop_2005	-	GCN5-related N-acetyltransferase
1973	 67.78	0	2150116..2151282	-	388	188581259	-	Mpop_2006	-	Orn/DAP/Arg decarboxylase 2
1974	 70.76	0	2151958..2153595	+	545	188581260	-	Mpop_2007	-	periplasmic glucan biosynthesis protein MdoG
1975	 75.00	+1	2153592..2154107	+	171	188581261	-	Mpop_2008	-	GCN5-related N-acetyltransferase
1976	 70.52	0	2154273..2155361	+	362	188581262	-	Mpop_2009	-	NADH:flavin oxidoreductase/NADH oxidase
1977	 73.84	+1	2155562..2156230	+	222	188581263	-	Mpop_2010	-	Haloacid dehalogenase domain protein hydrolase
1978	 68.07	0	2156224..2156721	-	165	188581264	-	Mpop_2011	-	SmpA/OmlA domain protein
1979	 73.51	0	2156879..2157448	+	189	188581265	-	Mpop_2012	-	Ubiquinol-cytochrome C chaperone
1980	 69.75	0	2157448..2157966	+	172	188581266	-	Mpop_2013	-	hypothetical protein
1981	 69.47	0	2158159..2159229	+	356	188581267	-	Mpop_2014	-	fatty acid/phospholipid synthesis protein PlsX
1982	 72.27	0	2159276..2160256	+	326	188581268	-	Mpop_2015	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1983	 66.36	0	2160466..2160792	+	108	188581269	-	Mpop_2016	-	histone family protein DNA-binding protein
1984	 71.89	0	2160846..2161343	+	165	188581270	-	Mpop_2017	-	transcriptional regulator, MerR family
1985	 70.24	0	2161513..2161932	+	139	188581271	-	Mpop_2018	-	hypothetical protein
1986	 65.87	0	2162106..2162606	+	166	188581272	-	Mpop_2019	-	hypothetical protein
1987	 64.36	-1	2162866..2164818	+	650	188581273	-	Mpop_2020	-	putative serine protein kinase, PrkA
1988	 68.21	0	2164909..2166207	+	432	188581274	-	Mpop_2021	-	protein of unknown function DUF444
1989	 65.46	-1	2166263..2167834	+	523	188581275	-	Mpop_2022	-	SpoVR family protein
1990	 72.42	0	2167841..2168500	-	219	188581276	-	Mpop_2023	-	phosphoribosylglycinamide formyltransferase
1991	 71.91	0	2168497..2169564	-	355	188581277	-	Mpop_2024	-	phosphoribosylformylglycinamidine cyclo-ligase
1992	 69.18	0	2169781..2170893	+	370	188581278	-	Mpop_2025	-	protein of unknown function UPF0118
1993	 72.60	0	2170932..2171690	+	252	188581279	-	Mpop_2026	-	chromosomal replication initiator DnaA
1994	 68.06	0	2171883..2174249	+	788	188581280	-	Mpop_2027	-	Polyphosphate kinase
1995	 71.62	0	2174343..2175896	+	517	188581281	-	Mpop_2028	-	Ppx/GppA phosphatase
1996	 68.33	0	2176020..2176319	-	99	188581282	-	Mpop_2029	-	hypothetical protein
1997	 66.83	0	2176739..2177941	-	400	188581283	-	Mpop_2030	-	aminotransferase class I and II
1998	 66.01	0	2178385..2180367	+	660	188581284	-	Mpop_2031	-	coenzyme A transferase
1999	 71.50	0	2180802..2182478	+	558	188581285	-	Mpop_2032	-	methyl-accepting chemotaxis sensory transducer
2000	 69.77	0	2182691..2183755	+	354	188581286	-	Mpop_2033	-	ribosomal protein S2
2001	 67.54	0	2183897..2184817	+	306	188581287	-	Mpop_2034	-	translation elongation factor Ts
2002	 71.51	0	2184944..2185666	+	240	188581288	-	Mpop_2035	-	uridylate kinase
2003	 63.55	-1	2185791..2186336	-	181	188581289	-	Mpop_2036	-	Inorganic diphosphatase
2004	 73.96	+1	2186518..2187024	-	168	188581290	-	Mpop_2037	-	GCN5-related N-acetyltransferase
2005	 70.80	0	2187219..2187944	+	241	188581291	-	Mpop_2038	-	protein tyrosine/serine phosphatase
2006	 71.17	0	2187955..2188953	+	332	188581292	-	Mpop_2039	-	hypothetical protein
2007	 72.63	0	2189025..2190080	-	351	188581293	-	Mpop_2040	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
2008	 67.68	0	2190239..2192803	-	854	188581294	-	Mpop_2041	-	outer membrane protein assembly complex, YaeT protein
2009	 70.37	0	2193153..2194313	-	386	188581295	-	Mpop_2042	-	membrane-associated zinc metalloprotease
2010	 74.64	+1	2194529..2195707	-	392	188581296	-	Mpop_2043	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2011	 74.45	+1	2195722..2196582	-	286	188581297	-	Mpop_2044	-	phosphatidate cytidylyltransferase
2012	 71.79	0	2196582..2197361	-	259	188581298	-	Mpop_2045	-	undecaprenyl diphosphate synthase
2013	 66.13	0	2197459..2198022	-	187	188581299	-	Mpop_2046	-	ribosome recycling factor
2014	 70.22	0	2198435..2200123	+	562	188581300	-	Mpop_2047	-	methyl-accepting chemotaxis sensory transducer
2015	 75.58	+1	2200161..2201462	-	433	188581301	-	Mpop_2048	-	Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
2016	 70.19	0	2201657..2202535	+	292	188581302	-	Mpop_2049	-	acyl-CoA thioesterase II
2017	 64.01	-1	2202797..2203135	+	112	188581303	-	Mpop_2050	-	nitrogen regulatory protein P-II
2018	 67.13	0	2203268..2204764	+	498	188581304	-	Mpop_2051	-	ammonium transporter
2019	 64.91	-1	2205119..2206372	+	417	188581305	-	Mpop_2052	-	hypothetical protein
2020	 71.44	0	2206615..2209233	+	872	188581306	-	Mpop_2053	-	cell divisionFtsK/SpoIIIE
2021	 70.72	0	2209412..2211556	+	714	188581307	-	Mpop_2054	-	TonB-dependent receptor plug
2022	 69.61	0	2211911..2213878	+	655	188581308	-	Mpop_2055	-	signal transduction histidine kinase
2023	 74.38	+1	2213894..2214217	-	107	188581309	-	Mpop_2056	-	hypothetical protein
2024	 69.77	0	2214214..2216532	-	772	188581310	-	Mpop_2057	-	oxidoreductase alpha (molybdopterin) subunit
2025	 74.09	+1	2216875..2217951	-	358	188581311	-	Mpop_2058	-	Dihydroorotate oxidase
2026	 74.07	+1	2217948..2218298	-	116	188581312	-	Mpop_2059	-	protein of unknown function DUF952
2027	 69.83	0	2218521..2219153	+	210	188581313	-	Mpop_2060	-	putative phage repressor
2028	 70.91	0	2219172..2219501	-	109	188581314	-	Mpop_2061	-	hypothetical protein
2029	 62.96	-1	2219662..2219877	-	71	188581315	-	Mpop_2062	-	hypothetical protein
2030	 71.08	0	2220013..2220873	-	286	188581316	-	Mpop_2063	-	serine O-acetyltransferase
2031	 69.22	0	2221174..2222073	-	299	188581317	-	Mpop_2064	-	transcriptional regulator, XRE family with shikimate kinase activity
2032	 71.57	0	2222356..2223987	-	543	188581318	-	Mpop_2065	-	extracellular solute-binding protein family 5
2033	 73.26	0	2223984..2226272	-	762	188581319	-	Mpop_2066	-	integral membrane sensor signal transduction histidine kinase
2034	 72.55	0	2226389..2226592	-	67	188581320	-	Mpop_2067	-	hypothetical protein
2035	 79.12	+2	2226604..2226876	-	90	188581321	-	Mpop_2068	-	hypothetical protein
2036	 69.06	0	2227060..2227935	-	291	188581322	-	Mpop_2069	-	two component transcriptional regulator, winged helix family
2037	 70.96	0	2228243..2230084	+	613	188581323	-	Mpop_2070	-	response regulator receiver sensor signal transduction histidine kinase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.