IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1887	 67.45	0	2054901..2055281	+	126	188581173	-	Mpop_1920	-	response regulator receiver protein
1888	 71.97	0	2055304..2056302	-	332	188581174	-	Mpop_1921	-	fructose-1,6-bisphosphatase, class II
1889	 72.86	0	2056489..2057811	-	440	188581175	-	Mpop_1922	-	Homoserine dehydrogenase
1890	 75.00	+1	2058146..2058445	+	99	188581176	-	Mpop_1923	-	hypothetical protein
1891	 70.73	0	2058763..2059746	-	327	188581177	-	Mpop_1924	-	hypothetical protein
1892	 71.58	0	2059853..2060218	-	121	188581178	-	Mpop_1925	-	hypothetical protein
1893	 70.90	0	2060261..2061511	-	416	188581179	-	Mpop_1926	-	Na+ dependent nucleoside transporter domain protein
1894	 73.43	0	2061606..2062256	-	216	188581180	-	Mpop_1927	-	hypothetical protein
1895	 76.08	+1	2062253..2063410	-	385	188581181	-	Mpop_1928	-	glycosyl transferase group 1
1896	 69.73	0	2063494..2064699	+	401	188581182	-	Mpop_1929	-	putative DNA topoisomerase I
1897	 73.12	0	2064719..2065819	-	366	188581183	-	Mpop_1930	-	methyl-accepting chemotaxis sensory transducer
1898	 65.40	-1	2066178..2067593	+	471	188581184	-	Mpop_1931	-	cytochrome bd ubiquinol oxidase subunit I
1899	 76.03	+1	2067602..2068327	-	241	188581185	-	Mpop_1932	-	transcriptional regulator, LuxR family
1900	 69.23	0	2068496..2069392	-	298	188581186	-	Mpop_1933	-	response regulator receiver modulated diguanylate cyclase
1901	 73.90	+1	2069584..2070039	-	151	188581187	-	Mpop_1934	-	hypothetical protein
1902	 72.09	0	2070203..2070460	-	85	188581188	-	Mpop_1935	-	hypothetical protein
1903	 69.88	0	2070905..2071744	+	279	188581189	-	Mpop_1936	-	iron permease FTR1
1904	 68.14	0	2071882..2072355	-	157	188581190	-	Mpop_1937	-	protein tyrosine phosphatase
1905	 67.45	0	2072599..2073111	-	170	188581191	-	Mpop_1938	-	hypothetical protein
1906	 72.30	0	2073250..2074545	-	431	188581192	-	Mpop_1939	-	Histidinol dehydrogenase
1907	 71.27	0	2074577..2075032	-	151	188581193	-	Mpop_1940	-	hypothetical protein
1908	 72.00	0	2075286..2075660	+	124	188581194	-	Mpop_1941	-	hypothetical protein
1909	 70.47	0	2075738..2077027	-	429	188581195	-	Mpop_1942	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1910	 77.60	+1	2077239..2077430	-	63	188581196	-	Mpop_1943	-	hypothetical protein
1911	 70.48	0	2078032..2079420	+	462	188581197	-	Mpop_1944	-	5-aminolevulinic acid synthase
1912	 71.25	0	2079461..2080027	+	188	188581198	-	Mpop_1945	-	hypothetical protein
1913	 69.87	0	2080024..2080491	+	155	188581199	-	Mpop_1946	-	hypothetical protein
1914	 69.73	0	2080498..2081052	-	184	188581200	-	Mpop_1947	-	hypothetical protein
1915	 66.34	0	2081259..2081564	+	101	188581201	-	Mpop_1948	-	PhnA protein
1916	 70.70	0	2081599..2082342	-	247	188581202	-	Mpop_1949	-	beta-lactamase domain protein
1917	 68.98	0	2082648..2084030	+	460	188581203	-	Mpop_1950	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1918	 69.78	0	2084476..2085021	-	181	188581204	-	Mpop_1951	-	hypothetical protein
1919	 74.01	+1	2085602..2086486	+	294	188581205	-	Mpop_1952	-	protein of unknown function DUF1732
1920	 68.90	0	2086530..2087201	+	223	188581206	-	Mpop_1953	-	Guanylate kinase
1921	 69.29	0	2087257..2089089	-	610	188581207	-	Mpop_1954	-	ABC transporter related
1922	 73.48	0	2089106..2090368	-	420	188581208	-	Mpop_1955	-	major facilitator superfamily MFS_1
1923	 74.94	+1	2090517..2091713	-	398	188581209	-	Mpop_1956	-	hypothetical protein
1924	 71.06	0	2091852..2092670	-	272	188581210	-	Mpop_1957	-	response regulator receiver protein
1925	 69.38	0	2092735..2093250	-	171	188581211	-	Mpop_1958	-	ErfK/YbiS/YcfS/YnhG family protein
1926	 74.17	+1	2093544..2094209	-	221	188581212	-	Mpop_1959	-	cob(II)yrinic acid a,c-diamide reductase
1927	 66.67	0	2094704..2095090	+	128	188581213	-	Mpop_1960	-	hypothetical protein
1928	 65.30	-1	2095135..2097252	-	705	188581214	-	Mpop_1961	-	TonB-dependent siderophore receptor
1929	 75.04	+1	2097725..2098345	-	206	188581215	-	Mpop_1962	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1930	 71.09	0	2098522..2100351	-	609	188581216	-	Mpop_1963	-	6-phosphogluconate dehydratase
1931	 72.51	0	2100757..2101458	+	233	188581217	-	Mpop_1964	-	transcriptional regulator, GntR family
1932	 70.56	0	2101525..2101935	-	136	188581218	-	Mpop_1965	-	hypothetical protein
1933	 70.19	0	2102162..2103352	+	396	188581219	-	Mpop_1966	-	Extracellular ligand-binding receptor
1934	 72.30	0	2103516..2104385	+	289	188581220	-	Mpop_1967	-	inner-membrane translocator
1935	 74.84	+1	2104388..2106871	+	827	188581221	-	Mpop_1968	-	ABC transporter related
1936	 71.82	0	2106934..2107806	+	290	188581222	-	Mpop_1969	-	polysaccharide deacetylase
1937	 70.29	0	2107888..2109597	+	569	188581223	-	Mpop_1970	-	gamma-glutamyltransferase
1938	 72.62	0	2109631..2110638	-	335	188581224	-	Mpop_1971	-	Hsp33 protein
1939	 70.17	0	2110882..2112993	-	703	188581225	-	Mpop_1972	-	Carbohydrate-selective porin OprB
1940	 70.00	0	2113401..2113940	-	179	188581226	-	Mpop_1973	-	hypothetical protein
1941	 67.61	0	2114276..2114698	+	140	188581227	-	Mpop_1974	-	Nucleoside-diphosphate kinase
1942	 70.31	0	2114881..2115264	+	127	188581228	-	Mpop_1975	-	hypothetical protein
1943	 71.66	0	2115363..2116484	-	373	188581229	-	Mpop_1976	-	peptidase M48 Ste24p
1944	 66.98	0	2116492..2117781	-	429	188581230	-	Mpop_1977	-	hypothetical protein
1945	 64.96	-1	2118427..2118660	-	77	188581231	-	Mpop_1978	-	protein of unknown function DUF466
1946	 67.15	0	2118668..2120725	-	685	188581232	-	Mpop_1979	-	carbon starvation protein CstA
1947	 73.84	+1	2121022..2121648	-	208	188581233	-	Mpop_1980	-	protein of unknown function DUF477
1948	 71.10	0	2121638..2122426	-	262	188581234	-	Mpop_1981	-	protein of unknown function DUF477
1949	 67.61	0	2122466..2123101	-	211	188581235	-	Mpop_1982	-	LemA family protein
1950	 70.48	0	2123550..2123864	+	104	188581236	-	Mpop_1983	-	conserved hypothetical selenoprotein
1951	 72.41	0	2123964..2126105	+	713	188581237	-	Mpop_1984	-	signal transduction histidine kinase
1952	 70.85	0	2126116..2126952	-	278	188581238	-	Mpop_1985	-	2,5-didehydrogluconate reductase
1953	 70.13	0	2127068..2127847	-	259	188581239	-	Mpop_1986	-	transcriptional regulator, Crp/Fnr family
1954	 70.25	0	2127958..2129490	-	510	188581240	-	Mpop_1987	-	glycogen/starch synthase, ADP-glucose type
1955	 69.10	0	2129760..2131400	-	546	188581241	-	Mpop_1988	-	alpha amylase catalytic region
1956	 67.96	0	2131726..2134272	+	848	188581242	-	Mpop_1989	-	glycogen/starch/alpha-glucan phosphorylase
1957	 57.47	-2	2134516..2134863	+	115	188581243	-	Mpop_1990	-	hypothetical protein
1958	 73.99	+1	2134886..2135827	-	313	188581244	-	Mpop_1991	-	putative ferredoxin-NAD reductase component
1959	 74.36	+1	2135871..2136299	-	142	188581245	-	Mpop_1992	-	hypothetical protein
1960	 69.82	0	2136436..2139348	-	970	188581246	-	Mpop_1993	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1961	 72.81	0	2139631..2140656	+	341	188581247	-	Mpop_1994	-	glycosyl transferase family 4
1962	 75.43	+1	2140669..2141592	+	307	188581248	-	Mpop_1995	-	NAD-dependent epimerase/dehydratase
1963	 72.22	0	2141597..2142208	-	203	188581249	-	Mpop_1996	-	NAD(P)H dehydrogenase (quinone)
1964	 68.87	0	2142285..2142692	+	135	188581250	-	Mpop_1997	-	transcriptional regulator, HxlR family
1965	 71.78	0	2142712..2144685	-	657	188581251	-	Mpop_1998	-	polysaccharide biosynthesis protein CapD
1966	 72.54	0	2144788..2145639	-	283	188581252	-	Mpop_1999	-	protein of unknown function DUF1206
1967	 70.76	0	2145646..2145987	-	113	188581253	-	Mpop_2000	-	hypothetical protein
1968	 68.25	0	2146012..2146578	-	188	188581254	-	Mpop_2001	-	protein of unknown function DUF820
1969	 68.45	0	2146650..2147210	-	186	188581255	-	Mpop_2002	-	protein of unknown function DUF820
1970	 67.49	0	2147309..2148757	-	482	188581256	-	Mpop_2003	-	Homospermidine synthase
1971	 68.25	0	2149035..2149223	+	62	188581257	-	Mpop_2004	-	hypothetical protein
1972	 73.48	0	2149364..2149921	-	185	188581258	-	Mpop_2005	-	GCN5-related N-acetyltransferase
1973	 67.78	0	2150116..2151282	-	388	188581259	-	Mpop_2006	-	Orn/DAP/Arg decarboxylase 2
1974	 70.76	0	2151958..2153595	+	545	188581260	-	Mpop_2007	-	periplasmic glucan biosynthesis protein MdoG
1975	 75.00	+1	2153592..2154107	+	171	188581261	-	Mpop_2008	-	GCN5-related N-acetyltransferase
1976	 70.52	0	2154273..2155361	+	362	188581262	-	Mpop_2009	-	NADH:flavin oxidoreductase/NADH oxidase
1977	 73.84	+1	2155562..2156230	+	222	188581263	-	Mpop_2010	-	Haloacid dehalogenase domain protein hydrolase
1978	 68.07	0	2156224..2156721	-	165	188581264	-	Mpop_2011	-	SmpA/OmlA domain protein
1979	 73.51	0	2156879..2157448	+	189	188581265	-	Mpop_2012	-	Ubiquinol-cytochrome C chaperone
1980	 69.75	0	2157448..2157966	+	172	188581266	-	Mpop_2013	-	hypothetical protein
1981	 69.47	0	2158159..2159229	+	356	188581267	-	Mpop_2014	-	fatty acid/phospholipid synthesis protein PlsX
1982	 72.27	0	2159276..2160256	+	326	188581268	-	Mpop_2015	-	3-oxoacyl-(acyl-carrier-protein) synthase III
1983	 66.36	0	2160466..2160792	+	108	188581269	-	Mpop_2016	-	histone family protein DNA-binding protein
1984	 71.89	0	2160846..2161343	+	165	188581270	-	Mpop_2017	-	transcriptional regulator, MerR family
1985	 70.24	0	2161513..2161932	+	139	188581271	-	Mpop_2018	-	hypothetical protein
1986	 65.87	0	2162106..2162606	+	166	188581272	-	Mpop_2019	-	hypothetical protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.