IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1856	 69.57	0	2025426..2025632	+	68	188581142	-	Mpop_1889	-	protein of unknown function DUF1289
1857	 71.48	0	2025738..2026568	+	276	188581143	-	Mpop_1890	-	Rhodanese domain protein
1858	 71.91	0	2026571..2027980	+	469	188581144	-	Mpop_1891	-	chromate transporter, chromate ion transporter (CHR) family
1859	 71.16	0	2027980..2028624	+	214	188581145	-	Mpop_1892	-	hypothetical protein
1860	 72.52	0	2028621..2029013	+	130	188581146	-	Mpop_1893	-	hypothetical protein
1861	 69.48	0	2029055..2030014	+	319	188581147	-	Mpop_1894	-	protein of unknown function LppY and LpqO
1862	 73.60	0	2030020..2031072	+	350	188581148	-	Mpop_1895	-	hypothetical protein
1863	 67.74	0	2031513..2031884	-	123	188581149	-	Mpop_1896	-	hypothetical protein
1864	 74.80	+1	2032362..2033246	-	294	188581150	-	Mpop_1897	-	D12 class N6 adenine-specific DNA methyltransferase
1865	 76.05	+1	2033243..2033860	-	205	188581151	-	Mpop_1898	-	hypothetical protein
1866	 76.46	+1	2034145..2034624	+	159	188581152	-	Mpop_1899	-	hypothetical protein
1867	 74.65	+1	2034621..2034833	+	70	188581153	-	Mpop_1900	-	hypothetical protein
1868	 80.36	+2	2034830..2034997	+	55	188581154	-	Mpop_1901	-	hypothetical protein
1869	 74.68	+1	2035009..2035857	+	282	188581155	-	Mpop_1902	-	hypothetical protein
1870	 72.55	0	2035857..2036111	+	84	188581156	-	Mpop_1903	-	hypothetical protein
1871	 72.97	0	2036108..2037328	+	406	188581157	-	Mpop_1904	-	hypothetical protein
1872	 73.47	0	2037669..2038991	+	440	188581158	-	Mpop_1905	-	integrase family protein
1873	 65.28	-1	2039420..2040718	-	432	188581159	-	Mpop_1906	-	major facilitator superfamily MFS_1
1874	 68.91	0	2041335..2042717	+	460	188581160	-	Mpop_1907	-	Ethanolamine ammonia lyase large subunit
1875	 75.22	+1	2042714..2043496	+	260	188581161	-	Mpop_1908	-	Ethanolamine ammonia-lyase
1876	 69.79	0	2044003..2045733	+	576	188581162	-	Mpop_1909	-	dihydroxy-acid dehydratase
1877	 69.93	0	2045720..2046607	+	295	188581163	-	Mpop_1910	-	Sel1 domain protein repeat-containing protein
1878	 69.94	0	2046651..2047445	-	264	188581164	-	Mpop_1911	-	exodeoxyribonuclease III Xth
1879	 71.82	0	2047530..2048189	+	219	188581165	-	Mpop_1912	-	hypothetical protein
1880	 72.02	0	2048314..2050236	-	640	188581166	-	Mpop_1913	-	AMP-dependent synthetase and ligase
1881	 61.58	-2	2050428..2050604	-	58	188581167	-	Mpop_1914	-	protein of unknown function DUF465
1882	 65.30	-1	2050871..2051089	+	72	188581168	-	Mpop_1915	-	protein of unknown function DUF465
1883	 65.54	-1	2051153..2051329	-	58	188581169	-	Mpop_1916	-	hypothetical protein
1884	 72.90	0	2051581..2052093	+	170	188581170	-	Mpop_1917	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1885	 73.00	0	2052135..2053223	+	362	188581171	-	Mpop_1918	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1886	 69.22	0	2053611..2054471	+	286	188581172	-	Mpop_1919	-	Tetratricopeptide TPR_2 repeat protein
1887	 67.45	0	2054901..2055281	+	126	188581173	-	Mpop_1920	-	response regulator receiver protein
1888	 71.97	0	2055304..2056302	-	332	188581174	-	Mpop_1921	-	fructose-1,6-bisphosphatase, class II
1889	 72.86	0	2056489..2057811	-	440	188581175	-	Mpop_1922	-	Homoserine dehydrogenase
1890	 75.00	+1	2058146..2058445	+	99	188581176	-	Mpop_1923	-	hypothetical protein
1891	 70.73	0	2058763..2059746	-	327	188581177	-	Mpop_1924	-	hypothetical protein
1892	 71.58	0	2059853..2060218	-	121	188581178	-	Mpop_1925	-	hypothetical protein
1893	 70.90	0	2060261..2061511	-	416	188581179	-	Mpop_1926	-	Na+ dependent nucleoside transporter domain protein
1894	 73.43	0	2061606..2062256	-	216	188581180	-	Mpop_1927	-	hypothetical protein
1895	 76.08	+1	2062253..2063410	-	385	188581181	-	Mpop_1928	-	glycosyl transferase group 1
1896	 69.73	0	2063494..2064699	+	401	188581182	-	Mpop_1929	-	putative DNA topoisomerase I
1897	 73.12	0	2064719..2065819	-	366	188581183	-	Mpop_1930	-	methyl-accepting chemotaxis sensory transducer
1898	 65.40	-1	2066178..2067593	+	471	188581184	-	Mpop_1931	-	cytochrome bd ubiquinol oxidase subunit I
1899	 76.03	+1	2067602..2068327	-	241	188581185	-	Mpop_1932	-	transcriptional regulator, LuxR family
1900	 69.23	0	2068496..2069392	-	298	188581186	-	Mpop_1933	-	response regulator receiver modulated diguanylate cyclase
1901	 73.90	+1	2069584..2070039	-	151	188581187	-	Mpop_1934	-	hypothetical protein
1902	 72.09	0	2070203..2070460	-	85	188581188	-	Mpop_1935	-	hypothetical protein
1903	 69.88	0	2070905..2071744	+	279	188581189	-	Mpop_1936	-	iron permease FTR1
1904	 68.14	0	2071882..2072355	-	157	188581190	-	Mpop_1937	-	protein tyrosine phosphatase
1905	 67.45	0	2072599..2073111	-	170	188581191	-	Mpop_1938	-	hypothetical protein
1906	 72.30	0	2073250..2074545	-	431	188581192	-	Mpop_1939	-	Histidinol dehydrogenase
1907	 71.27	0	2074577..2075032	-	151	188581193	-	Mpop_1940	-	hypothetical protein
1908	 72.00	0	2075286..2075660	+	124	188581194	-	Mpop_1941	-	hypothetical protein
1909	 70.47	0	2075738..2077027	-	429	188581195	-	Mpop_1942	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1910	 77.60	+1	2077239..2077430	-	63	188581196	-	Mpop_1943	-	hypothetical protein
1911	 70.48	0	2078032..2079420	+	462	188581197	-	Mpop_1944	-	5-aminolevulinic acid synthase
1912	 71.25	0	2079461..2080027	+	188	188581198	-	Mpop_1945	-	hypothetical protein
1913	 69.87	0	2080024..2080491	+	155	188581199	-	Mpop_1946	-	hypothetical protein
1914	 69.73	0	2080498..2081052	-	184	188581200	-	Mpop_1947	-	hypothetical protein
1915	 66.34	0	2081259..2081564	+	101	188581201	-	Mpop_1948	-	PhnA protein
1916	 70.70	0	2081599..2082342	-	247	188581202	-	Mpop_1949	-	beta-lactamase domain protein
1917	 68.98	0	2082648..2084030	+	460	188581203	-	Mpop_1950	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1918	 69.78	0	2084476..2085021	-	181	188581204	-	Mpop_1951	-	hypothetical protein
1919	 74.01	+1	2085602..2086486	+	294	188581205	-	Mpop_1952	-	protein of unknown function DUF1732
1920	 68.90	0	2086530..2087201	+	223	188581206	-	Mpop_1953	-	Guanylate kinase
1921	 69.29	0	2087257..2089089	-	610	188581207	-	Mpop_1954	-	ABC transporter related
1922	 73.48	0	2089106..2090368	-	420	188581208	-	Mpop_1955	-	major facilitator superfamily MFS_1
1923	 74.94	+1	2090517..2091713	-	398	188581209	-	Mpop_1956	-	hypothetical protein
1924	 71.06	0	2091852..2092670	-	272	188581210	-	Mpop_1957	-	response regulator receiver protein
1925	 69.38	0	2092735..2093250	-	171	188581211	-	Mpop_1958	-	ErfK/YbiS/YcfS/YnhG family protein
1926	 74.17	+1	2093544..2094209	-	221	188581212	-	Mpop_1959	-	cob(II)yrinic acid a,c-diamide reductase
1927	 66.67	0	2094704..2095090	+	128	188581213	-	Mpop_1960	-	hypothetical protein
1928	 65.30	-1	2095135..2097252	-	705	188581214	-	Mpop_1961	-	TonB-dependent siderophore receptor
1929	 75.04	+1	2097725..2098345	-	206	188581215	-	Mpop_1962	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1930	 71.09	0	2098522..2100351	-	609	188581216	-	Mpop_1963	-	6-phosphogluconate dehydratase
1931	 72.51	0	2100757..2101458	+	233	188581217	-	Mpop_1964	-	transcriptional regulator, GntR family
1932	 70.56	0	2101525..2101935	-	136	188581218	-	Mpop_1965	-	hypothetical protein
1933	 70.19	0	2102162..2103352	+	396	188581219	-	Mpop_1966	-	Extracellular ligand-binding receptor
1934	 72.30	0	2103516..2104385	+	289	188581220	-	Mpop_1967	-	inner-membrane translocator
1935	 74.84	+1	2104388..2106871	+	827	188581221	-	Mpop_1968	-	ABC transporter related
1936	 71.82	0	2106934..2107806	+	290	188581222	-	Mpop_1969	-	polysaccharide deacetylase
1937	 70.29	0	2107888..2109597	+	569	188581223	-	Mpop_1970	-	gamma-glutamyltransferase
1938	 72.62	0	2109631..2110638	-	335	188581224	-	Mpop_1971	-	Hsp33 protein
1939	 70.17	0	2110882..2112993	-	703	188581225	-	Mpop_1972	-	Carbohydrate-selective porin OprB
1940	 70.00	0	2113401..2113940	-	179	188581226	-	Mpop_1973	-	hypothetical protein
1941	 67.61	0	2114276..2114698	+	140	188581227	-	Mpop_1974	-	Nucleoside-diphosphate kinase
1942	 70.31	0	2114881..2115264	+	127	188581228	-	Mpop_1975	-	hypothetical protein
1943	 71.66	0	2115363..2116484	-	373	188581229	-	Mpop_1976	-	peptidase M48 Ste24p
1944	 66.98	0	2116492..2117781	-	429	188581230	-	Mpop_1977	-	hypothetical protein
1945	 64.96	-1	2118427..2118660	-	77	188581231	-	Mpop_1978	-	protein of unknown function DUF466
1946	 67.15	0	2118668..2120725	-	685	188581232	-	Mpop_1979	-	carbon starvation protein CstA
1947	 73.84	+1	2121022..2121648	-	208	188581233	-	Mpop_1980	-	protein of unknown function DUF477
1948	 71.10	0	2121638..2122426	-	262	188581234	-	Mpop_1981	-	protein of unknown function DUF477
1949	 67.61	0	2122466..2123101	-	211	188581235	-	Mpop_1982	-	LemA family protein
1950	 70.48	0	2123550..2123864	+	104	188581236	-	Mpop_1983	-	conserved hypothetical selenoprotein
1951	 72.41	0	2123964..2126105	+	713	188581237	-	Mpop_1984	-	signal transduction histidine kinase
1952	 70.85	0	2126116..2126952	-	278	188581238	-	Mpop_1985	-	2,5-didehydrogluconate reductase
1953	 70.13	0	2127068..2127847	-	259	188581239	-	Mpop_1986	-	transcriptional regulator, Crp/Fnr family
1954	 70.25	0	2127958..2129490	-	510	188581240	-	Mpop_1987	-	glycogen/starch synthase, ADP-glucose type
1955	 69.10	0	2129760..2131400	-	546	188581241	-	Mpop_1988	-	alpha amylase catalytic region
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.