IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1793	 64.91	-1	1963417..1965069	-	550	188581079	-	Mpop_1826	-	ABC transporter related
1794	 70.83	0	1965305..1965592	-	95	188581080	-	Mpop_1827	-	hypothetical protein
1795	 71.69	0	1965619..1966494	-	291	188581081	-	Mpop_1828	-	DNA/RNA non-specific endonuclease
1796	 76.08	+1	1966502..1966756	-	84	188581082	-	Mpop_1829	-	hypothetical protein
1797	 69.79	0	1967067..1969049	+	660	188581083	-	Mpop_1830	-	deoxyxylulose-5-phosphate synthase
1798	 69.79	0	1969282..1970307	+	341	188581084	-	Mpop_1831	-	hopanoid-associated sugar epimerase
1799	 69.33	0	1970304..1971203	+	299	188581085	-	Mpop_1832	-	squalene synthase HpnC
1800	 72.07	0	1971200..1972051	+	283	188581086	-	Mpop_1833	-	squalene synthase HpnD
1801	 71.74	0	1972053..1973354	+	433	188581087	-	Mpop_1834	-	squalene-associated FAD-dependent desaturase
1802	 68.21	0	1973399..1975402	+	667	188581088	-	Mpop_1835	-	squalene-hopene cyclase
1803	 72.20	0	1975542..1976210	+	222	188581089	-	Mpop_1836	-	hypothetical protein
1804	 70.61	0	1976366..1977736	-	456	188581090	-	Mpop_1837	-	8-amino-7-oxononanoate synthase
1805	 72.66	0	1977733..1985139	-	2468	188581091	-	Mpop_1838	-	Beta-ketoacyl synthase
1806	 68.74	0	1985660..1986964	-	434	188581092	-	Mpop_1839	-	nucleotide sugar dehydrogenase
1807	 73.75	+1	1987075..1989207	-	710	188581093	-	Mpop_1840	-	glycosyl transferase family 2
1808	 65.81	0	1989216..1990262	-	348	188581094	-	Mpop_1841	-	hypothetical protein
1809	 78.97	+2	1991025..1991471	+	148	188581095	-	Mpop_1842	-	hypothetical protein
1810	 74.17	+1	1991605..1991937	+	110	188581096	-	Mpop_1843	-	hypothetical protein
1811	 72.26	0	1992158..1993015	+	285	188581097	-	Mpop_1844	-	protein of unknown function DUF1738
1812	 63.09	-1	1993532..1994425	+	297	188581098	-	Mpop_1845	-	hypothetical protein
1813	 64.14	-1	1994467..1994862	+	131	188581099	-	Mpop_1846	-	DNA mismatch endonuclease Vsr
1814	 69.87	0	1994888..1996228	+	446	188581100	-	Mpop_1847	-	DNA-cytosine methyltransferase
1815	 65.41	-1	1996221..1997018	+	265	188581101	-	Mpop_1848	-	endonuclease
1816	 69.07	0	1997024..1997731	+	235	188581102	-	Mpop_1849	-	methyltransferase small
1817	 59.73	-2	1997728..1998102	+	124	188581103	-	Mpop_1850	-	response regulator receiver protein
1818	 57.74	-2	1998102..1998818	+	238	188581104	-	Mpop_1851	-	hypothetical protein
1819	 62.49	-1	1998869..1999777	-	302	188581105	-	Mpop_1852	-	hypothetical protein
1820	 74.06	+1	2000213..2000956	+	247	188581106	-	Mpop_1853	-	hypothetical protein
1821	 72.60	0	2000973..2001461	+	162	188581107	-	Mpop_1854	-	hypothetical protein
1822	 75.38	+1	2001458..2001652	+	64	188581108	-	Mpop_1855	-	hypothetical protein
1823	 74.74	+1	2001649..2002875	+	408	188581109	-	Mpop_1856	-	hypothetical protein
1824	 77.85	+2	2002872..2003747	-	291	188581110	-	Mpop_1857	-	hypothetical protein
1825	 77.78	+2	2003737..2004258	-	173	188581111	-	Mpop_1858	-	non-ribosomal peptide synthetase
1826	 73.27	0	2004276..2004608	-	110	188581112	-	Mpop_1859	-	hypothetical protein
1827	 73.11	0	2004718..2005074	-	118	188581113	-	Mpop_1860	-	hypothetical protein
1828	 72.88	0	2005106..2005411	-	101	188581114	-	Mpop_1861	-	hypothetical protein
1829	 75.24	+1	2005476..2005685	-	69	188581115	-	Mpop_1862	-	hypothetical protein
1830	 79.14	+2	2005881..2006393	+	170	188581116	-	Mpop_1863	-	hypothetical protein
1831	 70.41	0	2006455..2007336	-	293	188581117	-	Mpop_1864	-	prophage antirepressor
1832	 76.34	+1	2007556..2007834	-	92	188581118	-	Mpop_1865	-	hypothetical protein
1833	 71.54	0	2007831..2008097	-	88	188581119	-	Mpop_1866	-	hypothetical protein
1834	 78.93	+2	2008079..2008657	-	192	188581120	-	Mpop_1867	-	hypothetical protein
1835	 68.97	0	2008660..2009442	-	260	188581121	-	Mpop_1868	-	hypothetical protein
1836	 77.46	+1	2009473..2009685	-	70	188581122	-	Mpop_1869	-	hypothetical protein
1837	 80.00	+2	2009678..2009842	-	54	188581123	-	Mpop_1870	-	hypothetical protein
1838	 79.10	+2	2009895..2010071	-	58	188581124	-	Mpop_1871	-	hypothetical protein
1839	 78.79	+2	2010068..2010298	-	76	188581125	-	Mpop_1872	-	hypothetical protein
1840	 81.25	+2	2010295..2010678	-	127	188581126	-	Mpop_1873	-	hypothetical protein
1841	 72.97	0	2010678..2010788	-	36	188581127	-	Mpop_1874	-	hypothetical protein
1842	 73.52	0	2010791..2011330	-	179	188581128	-	Mpop_1875	-	glycoside hydrolase family 24
1843	 73.93	+1	2011330..2011563	-	77	188581129	-	Mpop_1876	-	hypothetical protein
1844	 77.10	+1	2011560..2011904	-	114	188581130	-	Mpop_1877	-	hypothetical protein
1845	 72.71	0	2011901..2012347	-	148	188581131	-	Mpop_1878	-	hypothetical protein
1846	 74.68	+1	2012344..2012580	-	78	188581132	-	Mpop_1879	-	hypothetical protein
1847	 80.43	+2	2012655..2012792	-	45	188581133	-	Mpop_1880	-	hypothetical protein
1848	 72.18	0	2013522..2015354	+	610	188581134	-	Mpop_1881	-	hypothetical protein
1849	 72.21	0	2015735..2016709	+	324	188581135	-	Mpop_1882	-	hypothetical protein
1850	 66.67	0	2017921..2018196	+	91	188581136	-	Mpop_1883	-	protein of unknown function DUF156
1851	 72.51	0	2018204..2019538	+	444	188581137	-	Mpop_1884	-	major facilitator superfamily MFS_1
1852	 71.99	0	2019664..2020095	+	143	188581138	-	Mpop_1885	-	DNA polymerase III, subunits gamma and tau
1853	 74.51	+1	2020151..2021872	+	573	188581139	-	Mpop_1886	-	efflux transporter, RND family, MFP subunit
1854	 70.91	0	2021881..2024994	+	1037	188581140	-	Mpop_1887	-	heavy metal efflux pump, CzcA family
1855	 70.93	0	2025012..2025386	+	124	188581141	-	Mpop_1888	-	hypothetical protein
1856	 69.57	0	2025426..2025632	+	68	188581142	-	Mpop_1889	-	protein of unknown function DUF1289
1857	 71.48	0	2025738..2026568	+	276	188581143	-	Mpop_1890	-	Rhodanese domain protein
1858	 71.91	0	2026571..2027980	+	469	188581144	-	Mpop_1891	-	chromate transporter, chromate ion transporter (CHR) family
1859	 71.16	0	2027980..2028624	+	214	188581145	-	Mpop_1892	-	hypothetical protein
1860	 72.52	0	2028621..2029013	+	130	188581146	-	Mpop_1893	-	hypothetical protein
1861	 69.48	0	2029055..2030014	+	319	188581147	-	Mpop_1894	-	protein of unknown function LppY and LpqO
1862	 73.60	0	2030020..2031072	+	350	188581148	-	Mpop_1895	-	hypothetical protein
1863	 67.74	0	2031513..2031884	-	123	188581149	-	Mpop_1896	-	hypothetical protein
1864	 74.80	+1	2032362..2033246	-	294	188581150	-	Mpop_1897	-	D12 class N6 adenine-specific DNA methyltransferase
1865	 76.05	+1	2033243..2033860	-	205	188581151	-	Mpop_1898	-	hypothetical protein
1866	 76.46	+1	2034145..2034624	+	159	188581152	-	Mpop_1899	-	hypothetical protein
1867	 74.65	+1	2034621..2034833	+	70	188581153	-	Mpop_1900	-	hypothetical protein
1868	 80.36	+2	2034830..2034997	+	55	188581154	-	Mpop_1901	-	hypothetical protein
1869	 74.68	+1	2035009..2035857	+	282	188581155	-	Mpop_1902	-	hypothetical protein
1870	 72.55	0	2035857..2036111	+	84	188581156	-	Mpop_1903	-	hypothetical protein
1871	 72.97	0	2036108..2037328	+	406	188581157	-	Mpop_1904	-	hypothetical protein
1872	 73.47	0	2037669..2038991	+	440	188581158	-	Mpop_1905	-	integrase family protein
1873	 65.28	-1	2039420..2040718	-	432	188581159	-	Mpop_1906	-	major facilitator superfamily MFS_1
1874	 68.91	0	2041335..2042717	+	460	188581160	-	Mpop_1907	-	Ethanolamine ammonia lyase large subunit
1875	 75.22	+1	2042714..2043496	+	260	188581161	-	Mpop_1908	-	Ethanolamine ammonia-lyase
1876	 69.79	0	2044003..2045733	+	576	188581162	-	Mpop_1909	-	dihydroxy-acid dehydratase
1877	 69.93	0	2045720..2046607	+	295	188581163	-	Mpop_1910	-	Sel1 domain protein repeat-containing protein
1878	 69.94	0	2046651..2047445	-	264	188581164	-	Mpop_1911	-	exodeoxyribonuclease III Xth
1879	 71.82	0	2047530..2048189	+	219	188581165	-	Mpop_1912	-	hypothetical protein
1880	 72.02	0	2048314..2050236	-	640	188581166	-	Mpop_1913	-	AMP-dependent synthetase and ligase
1881	 61.58	-2	2050428..2050604	-	58	188581167	-	Mpop_1914	-	protein of unknown function DUF465
1882	 65.30	-1	2050871..2051089	+	72	188581168	-	Mpop_1915	-	protein of unknown function DUF465
1883	 65.54	-1	2051153..2051329	-	58	188581169	-	Mpop_1916	-	hypothetical protein
1884	 72.90	0	2051581..2052093	+	170	188581170	-	Mpop_1917	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1885	 73.00	0	2052135..2053223	+	362	188581171	-	Mpop_1918	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1886	 69.22	0	2053611..2054471	+	286	188581172	-	Mpop_1919	-	Tetratricopeptide TPR_2 repeat protein
1887	 67.45	0	2054901..2055281	+	126	188581173	-	Mpop_1920	-	response regulator receiver protein
1888	 71.97	0	2055304..2056302	-	332	188581174	-	Mpop_1921	-	fructose-1,6-bisphosphatase, class II
1889	 72.86	0	2056489..2057811	-	440	188581175	-	Mpop_1922	-	Homoserine dehydrogenase
1890	 75.00	+1	2058146..2058445	+	99	188581176	-	Mpop_1923	-	hypothetical protein
1891	 70.73	0	2058763..2059746	-	327	188581177	-	Mpop_1924	-	hypothetical protein
1892	 71.58	0	2059853..2060218	-	121	188581178	-	Mpop_1925	-	hypothetical protein
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.