IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1634	 62.29	-1	1798427..1798723	+	98	188580920	-	Mpop_1667	-	helix-turn-helix domain protein
1635	 75.60	+1	1798732..1799604	+	290	188580921	-	Mpop_1668	-	hypothetical protein
1636	 74.86	+1	1799765..1800655	+	296	188580922	-	Mpop_1669	-	Acid phosphatase
1637	 77.18	+1	1800671..1801963	-	430	188580923	-	Mpop_1670	-	hypothetical protein
1638	 75.03	+1	1802122..1802958	-	278	188580924	-	Mpop_1671	-	hypothetical protein
1639	 69.90	0	1803553..1804479	+	308	188580925	-	Mpop_1672	-	diacylglycerol kinase catalytic region
1640	 67.34	0	1804495..1805241	+	248	188580926	-	Mpop_1673	-	Integral membrane protein TerC
1641	 76.52	+1	1805482..1806435	+	317	188580927	-	Mpop_1674	-	hypothetical protein
1642	 74.64	+1	1806516..1807067	-	183	188580928	-	Mpop_1675	-	ferric iron reductase protein
1643	 68.38	0	1807267..1809540	-	757	188580929	-	Mpop_1676	-	TonB-dependent siderophore receptor
1644	 69.32	0	1809823..1811556	-	577	188580930	-	Mpop_1677	-	thiamine pyrophosphate protein TPP binding domain protein
1645	 64.29	-1	1811809..1813152	-	447	188580931	-	Mpop_1678	-	transcription termination factor Rho
1646	 77.82	+2	1813440..1814228	-	262	188580932	-	Mpop_1679	-	Smr protein/MutS2
1647	 75.52	+1	1814225..1815376	-	383	188580933	-	Mpop_1680	-	MltA domain protein
1648	 71.74	0	1815512..1816240	-	242	188580934	-	Mpop_1681	-	import inner membrane translocase subunit Tim44
1649	 67.47	0	1816757..1817257	+	166	188580935	-	Mpop_1682	-	protein-export protein SecB
1650	 74.40	+1	1817509..1818762	+	417	188580936	-	Mpop_1683	-	major facilitator superfamily MFS_1
1651	 73.06	0	1818831..1819346	+	171	188580937	-	Mpop_1684	-	hypothetical protein
1652	 66.94	0	1819423..1819794	+	123	188580938	-	Mpop_1685	-	export-related chaperone CsaA
1653	 69.97	0	1819879..1821390	+	503	188580939	-	Mpop_1686	-	histidyl-tRNA synthetase
1654	 74.62	+1	1821476..1822267	-	263	188580940	-	Mpop_1687	-	hypothetical protein
1655	 71.35	0	1822331..1822714	-	127	188580941	-	Mpop_1688	-	hypothetical protein
1656	 68.35	0	1822711..1823127	-	138	188580942	-	Mpop_1689	-	protein of unknown function DUF1469
1657	 71.75	0	1823139..1823630	-	163	188580943	-	Mpop_1690	-	hypothetical protein
1658	 68.00	0	1824174..1825595	+	473	188580944	-	Mpop_1691	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1659	 68.86	0	1825672..1827765	+	697	188580945	-	Mpop_1692	-	glycogen debranching enzyme GlgX
1660	 60.33	-2	1827884..1828735	-	283	188580946	-	Mpop_1693	-	hypothetical protein
1661	 68.66	0	1828961..1829611	+	216	188580947	-	Mpop_1694	-	uracil phosphoribosyltransferase
1662	 64.18	-1	1829624..1829905	-	93	188580948	-	Mpop_1695	-	plasmid stabilization system
1663	 60.89	-2	1829902..1830126	-	74	188580949	-	Mpop_1696	-	hypothetical protein
1664	 69.34	0	1830238..1831248	+	336	188580950	-	Mpop_1697	-	NAD(P)H quinone oxidoreductase, PIG3 family
1665	 68.46	0	1831414..1831692	+	92	188580951	-	Mpop_1698	-	hypothetical protein
1666	 67.12	0	1831773..1832654	-	293	188580952	-	Mpop_1699	-	3-hydroxybutyryl-CoA dehydrogenase
1667	 69.92	0	1832813..1833766	-	317	188580953	-	Mpop_1700	-	Electron transfer flavoprotein alpha subunit
1668	 66.27	0	1833835..1834584	-	249	188580954	-	Mpop_1701	-	Electron transfer flavoprotein alpha/beta-subunit
1669	 71.20	0	1834747..1835319	-	190	188580955	-	Mpop_1702	-	ATP--cobalamin adenosyltransferase
1670	 68.39	0	1835440..1836078	-	212	188580956	-	Mpop_1703	-	hypothetical protein
1671	 66.27	0	1836346..1836855	+	169	188580957	-	Mpop_1704	-	hypothetical protein
1672	 65.05	-1	1836874..1837059	-	61	188580958	-	Mpop_1705	-	Hypoxia induced protein conserved region
1673	 73.30	0	1837140..1839884	-	914	188580959	-	Mpop_1706	-	hypothetical protein
1674	 69.23	0	1840018..1841109	-	363	188580960	-	Mpop_1707	-	UV damage repair endonuclease
1675	 75.88	+1	1841156..1842175	-	339	188580961	-	Mpop_1708	-	urea amidolyase related protein
1676	 74.24	+1	1842312..1843037	-	241	188580962	-	Mpop_1709	-	Allophanate hydrolase subunit 1
1677	 69.93	0	1843084..1843941	-	285	188580963	-	Mpop_1710	-	MCP methyltransferase, CheR-type
1678	 75.11	+1	1843941..1845089	-	382	188580964	-	Mpop_1711	-	response regulator receiver modulated CheB methylesterase
1679	 67.15	0	1845151..1845564	-	137	188580965	-	Mpop_1712	-	response regulator receiver protein
1680	 71.04	0	1845582..1846061	-	159	188580966	-	Mpop_1713	-	CheW protein
1681	 70.35	0	1846094..1848859	-	921	188580967	-	Mpop_1714	-	CheA signal transduction histidine kinase
1682	 71.71	0	1849104..1849856	-	250	188580968	-	Mpop_1715	-	hypothetical protein
1683	 74.84	+1	1850236..1851189	+	317	188580969	-	Mpop_1716	-	inositol monophosphatase
1684	 71.36	0	1851383..1852000	+	205	188580970	-	Mpop_1717	-	hypothetical protein
1685	 77.01	+1	1852231..1852926	+	231	188580971	-	Mpop_1718	-	hypothetical protein
1686	 63.44	-1	1853170..1853448	+	92	188580972	-	Mpop_1719	-	cyclic-AMP phosphodiesterase
1687	 76.92	+1	1853565..1853915	+	116	188580973	-	Mpop_1720	-	hypothetical protein
1688	 70.92	0	1854016..1855284	+	422	188580974	-	Mpop_1721	-	diaminopimelate decarboxylase
1689	 74.28	+1	1855354..1855905	+	183	188580975	-	Mpop_1722	-	protein of unknown function DUF1234
1690	 71.83	0	1856105..1856491	+	128	188580976	-	Mpop_1723	-	hypothetical protein
1691	 75.65	+1	1856606..1857640	-	344	188580977	-	Mpop_1724	-	hypothetical protein
1692	 73.22	0	1857637..1859085	-	482	188580978	-	Mpop_1725	-	protein of unknown function DUF463 YcjX family protein
1693	 70.48	0	1859192..1859689	-	165	188580979	-	Mpop_1726	-	RES domain protein
1694	 67.42	0	1859686..1860213	-	175	188580980	-	Mpop_1727	-	hypothetical protein
1695	 72.14	0	1860289..1863651	-	1120	188580981	-	Mpop_1728	-	multi-sensor hybrid histidine kinase
1696	 68.31	0	1863648..1865108	-	486	188580982	-	Mpop_1729	-	hypothetical protein
1697	 66.27	0	1865652..1865903	+	83	188580983	-	Mpop_1730	-	hypothetical protein
1698	 65.86	0	1866263..1867252	-	329	188580984	-	Mpop_1731	-	cobalamin synthesis protein P47K
1699	 65.87	0	1867295..1867669	-	124	188580985	-	Mpop_1732	-	protein of unknown function DUF86
1700	 65.32	-1	1867669..1867965	-	98	188580986	-	Mpop_1733	-	DNA polymerase beta domain protein region
1701	 71.70	0	1867991..1868566	-	191	188580987	-	Mpop_1734	-	transcriptional regulator, TetR family
1702	 70.95	0	1868781..1869713	+	310	188580988	-	Mpop_1735	-	beta-lactamase domain protein
1703	 67.63	0	1869755..1870585	+	276	188580989	-	Mpop_1736	-	Sulphur oxidation protein SoxZ
1704	 75.17	+1	1870609..1871196	+	195	188580990	-	Mpop_1737	-	rhodanese
1705	 71.21	0	1871230..1871625	+	131	188580991	-	Mpop_1738	-	Thioredoxin domain
1706	 69.45	0	1872054..1872878	+	274	188580992	-	Mpop_1739	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1707	 55.36	-2	1873790..1873957	+	55	188580993	-	Mpop_1740	-	ribosomal protein L33
1708	 72.68	0	1874138..1874320	+	60	188580994	-	Mpop_1741	-	hypothetical protein
1709	 77.97	+2	1874343..1874864	-	173	188580995	-	Mpop_1742	-	hypothetical protein
1710	 71.90	0	1875032..1876159	+	375	188580996	-	Mpop_1743	-	Radical SAM domain protein
1711	 73.53	0	1876213..1876911	-	232	188580997	-	Mpop_1744	-	Ribonuclease H
1712	 75.30	+1	1876999..1878075	-	358	188580998	-	Mpop_1745	-	glycosyl transferase group 1
1713	 67.53	0	1878107..1878919	-	270	188580999	-	Mpop_1746	-	metallophosphoesterase
1714	 67.58	0	1879575..1880783	+	402	188581000	-	Mpop_1747	-	aminotransferase class V
1715	 65.29	-1	1880946..1881890	+	314	188581001	-	Mpop_1748	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1716	 67.70	0	1882100..1882966	+	288	188581002	-	Mpop_1749	-	Methylenetetrahydrofolate dehydrogenase (NADP(+))
1717	 66.97	0	1883015..1883677	+	220	188581003	-	Mpop_1750	-	Formiminotransferase-cyclodeaminase
1718	 68.29	0	1884125..1885297	+	390	188581004	-	Mpop_1751	-	succinyl-CoA synthetase, beta subunit
1719	 68.13	0	1885320..1886210	+	296	188581005	-	Mpop_1752	-	succinyl-CoA synthetase, alpha subunit
1720	 68.91	0	1886478..1889246	+	922	188581006	-	Mpop_1753	-	Phosphoenolpyruvate carboxylase
1721	 66.67	0	1889382..1890356	+	324	188581007	-	Mpop_1754	-	Citrate (pro-3S)-lyase
1722	 67.20	0	1890428..1890994	-	188	188581008	-	Mpop_1755	-	protein of unknown function DUF1003
1723	 68.04	0	1891186..1892061	+	291	188581009	-	Mpop_1756	-	Carboxymethylenebutenolidase
1724	 65.61	-1	1892069..1892446	-	125	188581010	-	Mpop_1757	-	transcriptional coactivator/pterin dehydratase
1725	 72.79	0	1892672..1893667	+	331	188581011	-	Mpop_1758	-	putative ABC transporter periplasmic solute-binding protein
1726	 69.12	0	1893707..1894441	+	244	188581012	-	Mpop_1759	-	binding-protein-dependent transport systems inner membrane component
1727	 73.93	+1	1894422..1895219	+	265	188581013	-	Mpop_1760	-	ABC transporter related
1728	 64.73	-1	1895935..1897740	+	601	188581014	-	Mpop_1761	-	PQQ-dependent dehydrogenase, methanol/ethanol family
1729	 64.17	-1	1897897..1898496	+	199	188581015	-	Mpop_1762	-	hypothetical protein
1730	 67.72	0	1898496..1899350	+	284	188581016	-	Mpop_1763	-	extracellular solute-binding protein family 3
1731	 70.48	0	1899408..1899932	-	174	188581017	-	Mpop_1764	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1732	 69.55	0	1899929..1900309	-	126	188581018	-	Mpop_1765	-	dihydroneopterin aldolase
1733	 72.99	0	1900302..1901171	-	289	188581019	-	Mpop_1766	-	dihydropteroate synthase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.