IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1553	 69.72	0	1712229..1713113	-	294	188580839	-	Mpop_1585	-	succinyl-CoA synthetase, alpha subunit
1554	 65.41	-1	1713122..1714318	-	398	188580840	-	Mpop_1586	-	succinyl-CoA synthetase, beta subunit
1555	 66.56	0	1714454..1715416	-	320	188580841	-	Mpop_1587	-	malate dehydrogenase, NAD-dependent
1556	 71.99	0	1715768..1716499	-	243	188580842	-	Mpop_1588	-	transcriptional regulator, TetR family
1557	 70.63	0	1716751..1718490	+	579	188580843	-	Mpop_1589	-	Shikimate kinase, 3-dehydroquinate synthase
1558	 64.81	-1	1718523..1718846	-	107	188580844	-	Mpop_1590	-	putative plasmid maintenance system antidote protein, XRE family
1559	 58.42	-2	1718902..1719180	-	92	188580845	-	Mpop_1591	-	plasmid maintenance system killer
1560	 68.78	0	1719439..1720716	+	425	188580846	-	Mpop_1592	-	radical SAM enzyme, Cfr family
1561	 68.83	0	1720762..1722381	-	539	188580847	-	Mpop_1593	-	Phosphoenolpyruvate carboxykinase (ATP)
1562	 71.62	0	1722695..1723300	+	201	188580848	-	Mpop_1594	-	recombination protein RecR
1563	 72.21	0	1723547..1724737	+	396	188580849	-	Mpop_1595	-	hypothetical protein
1564	 75.05	+1	1724747..1726165	+	472	188580850	-	Mpop_1596	-	FAD linked oxidase domain protein
1565	 74.12	+1	1726165..1726902	+	245	188580851	-	Mpop_1597	-	short-chain dehydrogenase/reductase SDR
1566	 66.47	0	1727019..1727534	+	171	188580852	-	Mpop_1598	-	peptide deformylase
1567	 72.58	0	1727544..1728473	+	309	188580853	-	Mpop_1599	-	methionyl-tRNA formyltransferase
1568	 70.88	0	1728487..1729245	+	252	188580854	-	Mpop_1600	-	tRNA pseudouridine synthase A
1569	 69.67	0	1729230..1730393	-	387	188580855	-	Mpop_1601	-	succinyl-diaminopimelate desuccinylase
1570	 72.30	0	1730649..1731482	+	277	188580856	-	Mpop_1602	-	UBA/THIF-type NAD/FAD binding protein
1571	 71.69	0	1731430..1732305	-	291	188580857	-	Mpop_1603	-	SEC-C motif domain protein
1572	 71.29	0	1732323..1734746	-	807	188580858	-	Mpop_1604	-	phenylalanyl-tRNA synthetase, beta subunit
1573	 64.50	-1	1734771..1735277	-	168	188580859	-	Mpop_1605	-	hypothetical protein
1574	 61.32	-2	1735274..1735591	-	105	188580860	-	Mpop_1606	-	hypothetical protein
1575	 68.06	0	1735612..1736691	-	359	188580861	-	Mpop_1607	-	phenylalanyl-tRNA synthetase, alpha subunit
1576	 65.85	0	1736883..1737248	-	121	188580862	-	Mpop_1608	-	ribosomal protein L20
1577	 62.25	-1	1737302..1737505	-	67	188580863	-	Mpop_1609	-	ribosomal protein L35
1578	 65.26	-1	1737944..1739077	+	377	188580864	-	Mpop_1610	-	glycosyl transferase group 1
1579	 68.72	0	1739237..1741573	+	778	188580865	-	Mpop_1611	-	Amylo-alpha-16-glucosidase
1580	 63.41	-1	1741718..1742239	-	173	188580866	-	Mpop_1612	-	translation initiation factor IF-3
1581	 73.82	+1	1742417..1743646	-	409	188580867	-	Mpop_1613	-	glycosyl transferase group 1
1582	 72.68	0	1743772..1744569	+	265	188580868	-	Mpop_1614	-	alpha/beta hydrolase fold
1583	 70.03	0	1744614..1744910	-	98	188580869	-	Mpop_1615	-	protein of unknown function DUF1150
1584	 67.59	0	1745066..1745497	-	143	188580870	-	Mpop_1616	-	heat shock protein Hsp20
1585	 70.04	0	1746133..1746636	+	167	188580871	-	Mpop_1617	-	hypothetical protein
1586	 69.37	0	1746707..1747408	+	233	188580872	-	Mpop_1618	-	MotA/TolQ/ExbB proton channel
1587	 66.88	0	1747495..1747956	+	153	188580873	-	Mpop_1619	-	protein TolR
1588	 76.29	+1	1747996..1749180	+	394	188580874	-	Mpop_1620	-	TonB family protein
1589	 69.86	0	1749286..1749912	+	208	188580875	-	Mpop_1621	-	metallophosphoesterase
1590	 69.11	0	1750041..1750367	+	108	188580876	-	Mpop_1622	-	hypothetical protein
1591	 65.25	-1	1750559..1750699	+	46	188580877	-	Mpop_1623	-	hypothetical protein
1592	 69.58	0	1750737..1750976	-	79	188580878	-	Mpop_1624	-	hypothetical protein
1593	 70.13	0	1751154..1751528	+	124	188580879	-	Mpop_1625	-	flagellar FlaF family protein
1594	 74.14	+1	1751667..1752014	-	115	188580880	-	Mpop_1626	-	hypothetical protein
1595	 61.75	-1	1752180..1752809	-	209	188580881	-	Mpop_1627	-	hypothetical protein
1596	 67.38	0	1752788..1753066	-	92	188580882	-	Mpop_1628	-	hypothetical protein
1597	 67.88	0	1753218..1755110	-	630	188580883	-	Mpop_1629	-	thiamine biosynthesis protein ThiC
1598	 73.56	0	1755547..1755807	+	86	188580884	-	Mpop_1630	-	hypothetical protein
1599	 68.58	0	1755948..1756628	-	226	188580885	-	Mpop_1631	-	Hly-III family protein
1600	 73.21	0	1756897..1758042	-	381	188580886	-	Mpop_1632	-	cytochrome oxidase assembly
1601	 66.18	0	1758275..1758481	+	68	188580887	-	Mpop_1633	-	hypothetical protein
1602	 74.69	+1	1758563..1759048	+	161	188580888	-	Mpop_1634	-	hypothetical protein
1603	 73.98	+1	1759064..1760116	-	350	188580889	-	Mpop_1635	-	polysaccharide deacetylase
1604	 74.04	+1	1760318..1761511	+	397	188580890	-	Mpop_1636	-	conserved hypothetical protein; putative acyl-CoA N-acyltransferase related protein
1605	 70.37	0	1761617..1761832	-	71	188580891	-	Mpop_1637	-	hypothetical protein
1606	 66.96	0	1761965..1765717	-	1250	188580892	-	Mpop_1638	-	methionine synthase
1607	 68.49	0	1765912..1766844	-	310	188580893	-	Mpop_1639	-	5,10-methylenetetrahydrofolate reductase
1608	 73.18	0	1766903..1767931	-	342	188580894	-	Mpop_1640	-	transcriptional regulator, ArsR family
1609	 69.63	0	1768010..1769158	-	382	188580895	-	Mpop_1641	-	Patatin
1610	 69.07	0	1769485..1770813	+	442	188580896	-	Mpop_1642	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
1611	 68.16	0	1771106..1773118	+	670	188580897	-	Mpop_1643	-	K potassium transporter
1612	 68.19	0	1773492..1775729	+	745	188580898	-	Mpop_1644	-	TonB-dependent siderophore receptor
1613	 70.68	0	1775849..1776322	+	157	188580899	-	Mpop_1645	-	hypothetical protein
1614	 71.05	0	1776477..1777595	+	372	188580900	-	Mpop_1646	-	histidinol-phosphate aminotransferase
1615	 70.93	0	1777592..1778530	+	312	188580901	-	Mpop_1647	-	Prephenate dehydrogenase
1616	 71.57	0	1778548..1779486	+	312	188580902	-	Mpop_1648	-	hypothetical protein
1617	 71.18	0	1779630..1780736	-	368	188580903	-	Mpop_1649	-	conserved hypothetical proteinn
1618	 77.97	+2	1780870..1781214	-	114	188580904	-	Mpop_1650	-	hypothetical protein
1619	 69.66	0	1781612..1782178	+	188	188580905	-	Mpop_1651	-	hypothetical protein
1620	 72.58	0	1782189..1783220	+	343	188580906	-	Mpop_1652	-	DNA polymerase III, delta subunit
1621	 73.20	0	1783303..1784205	-	300	188580907	-	Mpop_1653	-	parB-like partition protein
1622	 69.11	0	1784233..1785093	-	286	188580908	-	Mpop_1654	-	Cobyrinic acid ac-diamide synthase
1623	 65.57	-1	1785090..1785725	-	211	188580909	-	Mpop_1655	-	methyltransferase GidB
1624	 71.68	0	1785817..1787691	-	624	188580910	-	Mpop_1656	-	glucose inhibited division protein A
1625	 65.17	-1	1787911..1788177	-	88	188580911	-	Mpop_1657	-	hypothetical protein
1626	 74.38	+1	1788761..1790095	-	444	188580912	-	Mpop_1658	-	tRNA modification GTPase TrmE
1627	 68.53	0	1790173..1792800	-	875	188580913	-	Mpop_1659	-	leucyl-tRNA synthetase
1628	 70.66	0	1792914..1793990	-	358	188580914	-	Mpop_1660	-	Protein of unknown function DUF1963
1629	 69.52	0	1794102..1794836	+	244	188580915	-	Mpop_1661	-	alanine racemase domain protein
1630	 74.58	+1	1794867..1795460	-	197	188580916	-	Mpop_1662	-	hypothetical protein
1631	 67.98	0	1795752..1796438	+	228	188580917	-	Mpop_1663	-	two component transcriptional regulator, winged helix family
1632	 72.92	0	1796572..1797051	+	159	188580918	-	Mpop_1664	-	cyclic nucleotide-binding protein
1633	 70.11	0	1797120..1797962	+	280	188580919	-	Mpop_1665	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
1634	 62.29	-1	1798427..1798723	+	98	188580920	-	Mpop_1667	-	helix-turn-helix domain protein
1635	 75.60	+1	1798732..1799604	+	290	188580921	-	Mpop_1668	-	hypothetical protein
1636	 74.86	+1	1799765..1800655	+	296	188580922	-	Mpop_1669	-	Acid phosphatase
1637	 77.18	+1	1800671..1801963	-	430	188580923	-	Mpop_1670	-	hypothetical protein
1638	 75.03	+1	1802122..1802958	-	278	188580924	-	Mpop_1671	-	hypothetical protein
1639	 69.90	0	1803553..1804479	+	308	188580925	-	Mpop_1672	-	diacylglycerol kinase catalytic region
1640	 67.34	0	1804495..1805241	+	248	188580926	-	Mpop_1673	-	Integral membrane protein TerC
1641	 76.52	+1	1805482..1806435	+	317	188580927	-	Mpop_1674	-	hypothetical protein
1642	 74.64	+1	1806516..1807067	-	183	188580928	-	Mpop_1675	-	ferric iron reductase protein
1643	 68.38	0	1807267..1809540	-	757	188580929	-	Mpop_1676	-	TonB-dependent siderophore receptor
1644	 69.32	0	1809823..1811556	-	577	188580930	-	Mpop_1677	-	thiamine pyrophosphate protein TPP binding domain protein
1645	 64.29	-1	1811809..1813152	-	447	188580931	-	Mpop_1678	-	transcription termination factor Rho
1646	 77.82	+2	1813440..1814228	-	262	188580932	-	Mpop_1679	-	Smr protein/MutS2
1647	 75.52	+1	1814225..1815376	-	383	188580933	-	Mpop_1680	-	MltA domain protein
1648	 71.74	0	1815512..1816240	-	242	188580934	-	Mpop_1681	-	import inner membrane translocase subunit Tim44
1649	 67.47	0	1816757..1817257	+	166	188580935	-	Mpop_1682	-	protein-export protein SecB
1650	 74.40	+1	1817509..1818762	+	417	188580936	-	Mpop_1683	-	major facilitator superfamily MFS_1
1651	 73.06	0	1818831..1819346	+	171	188580937	-	Mpop_1684	-	hypothetical protein
1652	 66.94	0	1819423..1819794	+	123	188580938	-	Mpop_1685	-	export-related chaperone CsaA
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.