IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1127	 66.52	0	1231635..1232960	-	441	188580413	-	Mpop_1151	-	major facilitator superfamily MFS_1
1128	 68.33	0	1233389..1233808	+	139	188580414	-	Mpop_1152	-	CBS domain containing protein
1129	 66.33	0	1233960..1234253	+	97	188580415	-	Mpop_1153	-	hypothetical protein
1130	 72.23	0	1234278..1236146	+	622	188580416	-	Mpop_1154	-	hypothetical protein
1131	 63.08	-1	1236254..1236532	+	92	188580417	-	Mpop_1155	-	hypothetical protein
1132	 67.61	0	1236514..1236726	-	70	188580418	-	Mpop_1156	-	hypothetical protein
1133	 67.60	0	1236864..1238153	-	429	188580419	-	Mpop_1157	-	formyl-CoA transferase
1134	 66.67	0	1238537..1239220	+	227	188580420	-	Mpop_1158	-	transcriptional regulator, GntR family
1135	 70.57	0	1239367..1240494	-	375	188580421	-	Mpop_1159	-	cobalamin synthesis protein P47K
1136	 70.93	0	1240781..1242280	-	499	188580422	-	Mpop_1160	-	Serine-type D-Ala-D-Ala carboxypeptidase
1137	 70.46	0	1242541..1243173	+	210	188580423	-	Mpop_1161	-	Radical SAM domain protein
1138	 67.23	0	1243285..1243641	+	118	188580424	-	Mpop_1162	-	queuosine biosynthesis protein QueD
1139	 71.81	0	1243644..1244363	+	239	188580425	-	Mpop_1163	-	exsB protein
1140	 73.85	+1	1244388..1245125	+	245	188580426	-	Mpop_1164	-	LmbE family protein
1141	 74.77	+1	1245228..1246091	+	287	188580427	-	Mpop_1165	-	glycosyl transferase family 2
1142	 75.46	+1	1246111..1246326	-	71	188580428	-	Mpop_1166	-	hypothetical protein
1143	 69.40	0	1246683..1246865	+	60	188580429	-	Mpop_1167	-	hypothetical protein
1144	 70.61	0	1246866..1247093	+	75	188580430	-	Mpop_1168	-	hypothetical protein
1145	 69.18	0	1247157..1247474	+	105	188580431	-	Mpop_1169	-	hypothetical protein
1146	 74.91	+1	1247504..1247794	+	96	188580432	-	Mpop_1170	-	hypothetical protein
1147	 59.15	-2	1247868..1248080	-	70	188580433	-	Mpop_1171	-	hypothetical protein
1148	 74.77	+1	1248237..1249310	-	357	188580434	-	Mpop_1172	-	hypothetical protein
1149	 76.50	+1	1249350..1250468	-	372	188580435	-	Mpop_1173	-	glycosyl transferase family 2
1150	 72.88	0	1250473..1251567	-	364	188580436	-	Mpop_1174	-	glycosyl transferase group 1
1151	 72.53	0	1251837..1252160	-	107	188580437	-	Mpop_1175	-	Phosphotransferase system, phosphocarrier protein HPr
1152	 65.67	0	1252303..1252704	-	133	188580438	-	Mpop_1176	-	PTS system fructose subfamily IIA component
1153	 73.86	+1	1252830..1253357	-	175	188580439	-	Mpop_1177	-	HPr kinase
1154	 71.26	0	1253354..1255204	-	616	188580440	-	Mpop_1178	-	integral membrane sensor signal transduction histidine kinase
1155	 65.55	-1	1255233..1255946	-	237	188580441	-	Mpop_1179	-	two component transcriptional regulator, winged helix family
1156	 75.03	+1	1256477..1257289	+	270	188580442	-	Mpop_1180	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
1157	 65.50	-1	1257440..1259245	+	601	188580443	-	Mpop_1181	-	GTP-binding protein LepA
1158	 68.09	0	1259517..1260782	+	421	188580444	-	Mpop_1182	-	efflux transporter, RND family, MFP subunit
1159	 68.59	0	1260883..1264053	+	1056	188580445	-	Mpop_1183	-	heavy metal efflux pump, CzcA family
1160	 61.17	-2	1264144..1264416	+	90	188580446	-	Mpop_1184	-	protein of unknown function DUF497
1161	 66.67	0	1264395..1264745	+	116	188580447	-	Mpop_1185	-	hypothetical protein
1162	 72.14	0	1264682..1265758	-	358	188580448	-	Mpop_1186	-	transcriptional regulator, LacI family
1163	 73.11	0	1265973..1268534	+	853	188580449	-	Mpop_1187	-	phosphoenolpyruvate-protein phosphotransferase
1164	 74.47	+1	1268538..1269485	+	315	188580450	-	Mpop_1188	-	1-phosphofructokinase
1165	 72.81	0	1269611..1271335	+	574	188580451	-	Mpop_1189	-	PTS system, fructose subfamily, IIC subunit
1166	 69.59	0	1271496..1273001	+	501	188580452	-	Mpop_1190	-	Carbohydrate-selective porin OprB
1167	 69.59	0	1273238..1274299	-	353	188580453	-	Mpop_1191	-	hypothetical protein
1168	 70.80	0	1274363..1277410	-	1015	188580454	-	Mpop_1192	-	glycosyl transferase family 51
1169	 65.16	-1	1277631..1278824	-	397	188580455	-	Mpop_1193	-	hypothetical protein
1170	 64.34	-1	1279008..1280210	-	400	188580456	-	Mpop_1194	-	conserved hypothetical protein; putative flagellin C-ter domain
1171	 66.67	0	1280414..1280830	+	138	188580457	-	Mpop_1195	-	flagellar FlbT family protein
1172	 72.69	0	1280858..1281073	-	71	188580458	-	Mpop_1196	-	hypothetical protein
1173	 71.70	0	1281169..1282320	-	383	188580459	-	Mpop_1197	-	acyltransferase 3
1174	 63.30	-1	1282670..1283233	-	187	188580460	-	Mpop_1198	-	PAS fold-3 domain protein
1175	 73.07	0	1283816..1284190	-	124	188580461	-	Mpop_1199	-	hypothetical protein
1176	 74.83	+1	1284358..1284786	+	142	188580462	-	Mpop_1200	-	protein of unknown function DUF442
1177	 71.31	0	1284799..1285551	-	250	188580463	-	Mpop_1201	-	methionine aminopeptidase, type I
1178	 66.48	0	1285649..1287259	-	536	188580464	-	Mpop_1202	-	drug resistance transporter, EmrB/QacA subfamily
1179	 68.92	0	1287256..1288233	-	325	188580465	-	Mpop_1203	-	secretion protein HlyD family protein
1180	 73.33	0	1288264..1288443	+	59	188580466	-	Mpop_1204	-	hypothetical protein
1181	 72.57	0	1288717..1289343	+	208	188580467	-	Mpop_1205	-	hypothetical protein
1182	 68.34	0	1289411..1290247	-	278	188580468	-	Mpop_1206	-	hypothetical protein
1183	 73.29	0	1290637..1291467	-	276	188580469	-	Mpop_1207	-	protein of unknown function DUF849
1184	 73.35	0	1291499..1292875	-	458	188580470	-	Mpop_1208	-	two component, sigma54 specific, transcriptional regulator, Fis family
1185	 73.58	0	1292865..1294730	-	621	188580471	-	Mpop_1209	-	histidine kinase
1186	 69.44	0	1294989..1295852	-	287	188580472	-	Mpop_1210	-	ABC transporter related
1187	 68.13	0	1295861..1296682	-	273	188580473	-	Mpop_1211	-	binding-protein-dependent transport systems inner membrane component
1188	 66.56	0	1296693..1297673	-	326	188580474	-	Mpop_1212	-	NMT1/THI5 like domain protein
1189	 74.80	+1	1297937..1298686	-	249	188580475	-	Mpop_1213	-	septum site-determining protein MinC
1190	 72.00	0	1298802..1300133	-	443	188580476	-	Mpop_1214	-	hypothetical protein
1191	 66.72	0	1300470..1302296	+	608	188580477	-	Mpop_1215	-	GTP-binding protein TypA
1192	 71.05	0	1302480..1304168	-	562	188580478	-	Mpop_1216	-	methyl-accepting chemotaxis sensory transducer
1193	 72.14	0	1304589..1305227	+	212	188580479	-	Mpop_1217	-	septum site-determining protein MinC
1194	 68.26	0	1305240..1306055	+	271	188580480	-	Mpop_1218	-	septum site-determining protein MinD
1195	 66.33	0	1306052..1306348	+	98	188580481	-	Mpop_1219	-	cell division topological specificity factor MinE
1196	 72.02	0	1306447..1307736	-	429	188580482	-	Mpop_1220	-	major facilitator superfamily MFS_1
1197	 74.87	+1	1307846..1308406	+	186	188580483	-	Mpop_1221	-	transcriptional regulator, TetR family
1198	 74.47	+1	1308426..1309784	-	452	188580484	-	Mpop_1222	-	cytochrome P450
1199	 71.10	0	1310248..1311645	-	465	188580485	-	Mpop_1224	-	glucose sorbosone dehydrogenase
1200	 71.10	0	1311665..1312543	-	292	188580486	-	Mpop_1225	-	alpha/beta hydrolase fold
1201	 69.35	0	1312660..1313403	-	247	188580487	-	Mpop_1226	-	short-chain dehydrogenase/reductase SDR
1202	 67.94	0	1313415..1314200	-	261	188580488	-	Mpop_1227	-	short-chain dehydrogenase/reductase SDR
1203	 71.63	0	1314510..1315214	-	234	188580489	-	Mpop_1228	-	bifunctional deaminase-reductase domain protein
1204	 73.19	0	1315211..1316068	-	285	188580490	-	Mpop_1229	-	short-chain dehydrogenase/reductase SDR
1205	 65.88	0	1316137..1317024	-	295	188580491	-	Mpop_1230	-	NAD-dependent epimerase/dehydratase
1206	 69.51	0	1317159..1318073	+	304	188580492	-	Mpop_1231	-	transcriptional regulator, LysR family
1207	 73.59	0	1318037..1318585	-	182	188580493	-	Mpop_1232	-	(2Fe-2S)-binding domain protein
1208	 76.84	+1	1318582..1321755	-	1057	188580494	-	Mpop_1233	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1209	 69.80	0	1321829..1322689	-	286	188580495	-	Mpop_1234	-	hypothetical protein
1210	 70.50	0	1322703..1324085	-	460	188580496	-	Mpop_1235	-	amidohydrolase
1211	 75.47	+1	1324093..1325649	-	518	188580497	-	Mpop_1236	-	glucose-methanol-choline oxidoreductase
1212	 70.54	0	1325651..1326322	-	223	188580498	-	Mpop_1237	-	thiamine pyrophosphate protein domain protein TPP-binding
1213	 70.06	0	1326319..1326819	-	166	188580499	-	Mpop_1238	-	sulfopyruvate decarboxylase
1214	 75.76	+1	1326923..1327846	-	307	188580500	-	Mpop_1239	-	transcriptional regulator, LysR family
1215	 71.96	0	1327865..1328506	-	213	188580501	-	Mpop_1240	-	Glutathione S-transferase domain
1216	 75.54	+1	1328503..1329156	-	217	188580502	-	Mpop_1241	-	Rieske (2Fe-2S) domain protein
1217	 70.57	0	1329149..1329430	-	93	188580503	-	Mpop_1242	-	hypothetical protein
1218	 68.86	0	1329764..1330903	+	379	188580504	-	Mpop_1243	-	basic membrane lipoprotein
1219	 73.91	+1	1330903..1332504	+	533	188580505	-	Mpop_1244	-	ABC transporter related
1220	 72.74	0	1332501..1333553	+	350	188580506	-	Mpop_1245	-	inner-membrane translocator
1221	 75.00	+1	1333579..1334514	+	311	188580507	-	Mpop_1246	-	inner-membrane translocator
1222	 71.18	0	1334528..1335922	+	464	188580508	-	Mpop_1247	-	amidohydrolase
1223	 69.36	0	1335975..1336829	+	284	188580509	-	Mpop_1248	-	hypothetical protein
1224	 69.21	0	1336901..1338433	-	510	188580510	-	Mpop_1249	-	citrate lyase, alpha subunit
1225	 69.98	0	1338533..1339468	-	311	188580511	-	Mpop_1250	-	transcriptional regulator, LysR family
1226	 69.85	0	1339753..1341195	+	480	188580512	-	Mpop_1251	-	Aldehyde Dehydrogenase
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.