IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.70   STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1045	 69.92	0	1131705..1132319	-	204	188580331	-	Mpop_1066	-	hypothetical protein
1046	 76.01	+1	1132316..1134145	-	609	188580332	-	Mpop_1067	-	hypothetical protein
1047	 70.68	0	1134133..1141614	-	2493	188580333	-	Mpop_1068	-	putative multicopper oxidase
1048	 70.56	0	1142235..1143647	+	470	188580334	-	Mpop_1069	-	urate catabolism protein
1049	 71.06	0	1143680..1144612	-	310	188580335	-	Mpop_1070	-	transcriptional regulator, LysR family
1050	 70.98	0	1144770..1146020	+	416	188580336	-	Mpop_1071	-	protein of unknown function DUF989
1051	 72.26	0	1146067..1146906	+	279	188580337	-	Mpop_1072	-	allantoin catabolism protein
1052	 71.49	0	1146903..1147400	+	165	188580338	-	Mpop_1073	-	Ureidoglycolate hydrolase
1053	 70.25	0	1147524..1148165	+	213	188580339	-	Mpop_1074	-	transcriptional regulator, TetR family
1054	 65.52	-1	1148380..1149510	+	376	188580340	-	Mpop_1075	-	Luciferase-like monooxygenase
1055	 70.97	0	1149510..1150253	+	247	188580341	-	Mpop_1076	-	isochorismatase hydrolase
1056	 68.96	0	1150266..1150658	+	130	188580342	-	Mpop_1077	-	Endoribonuclease L-PSP
1057	 73.95	+1	1150663..1151445	+	260	188580343	-	Mpop_1078	-	alpha/beta hydrolase fold
1058	 76.03	+1	1151476..1152084	+	202	188580344	-	Mpop_1079	-	flavin reductase domain protein FMN-binding
1059	 72.83	0	1152088..1152606	+	172	188580345	-	Mpop_1080	-	hypothetical protein
1060	 70.80	0	1152759..1153628	+	289	188580346	-	Mpop_1081	-	ABC transporter related
1061	 72.55	0	1153618..1154535	+	305	188580347	-	Mpop_1082	-	binding-protein-dependent transport systems inner membrane component
1062	 73.19	0	1154532..1155497	+	321	188580348	-	Mpop_1083	-	binding-protein-dependent transport systems inner membrane component
1063	 69.05	0	1155563..1156567	+	334	188580349	-	Mpop_1084	-	NMT1/THI5 like domain protein
1064	 75.86	+1	1156709..1157524	+	271	188580350	-	Mpop_1085	-	molybdopterin dehydrogenase FAD-binding
1065	 72.77	0	1157521..1160307	+	928	188580351	-	Mpop_1086	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1066	 69.87	0	1160304..1161677	+	457	188580352	-	Mpop_1087	-	guanine deaminase
1067	 72.08	0	1161691..1162614	-	307	188580353	-	Mpop_1088	-	transcriptional regulator, LysR family
1068	 74.89	+1	1162795..1163025	-	76	188580354	-	Mpop_1089	-	hypothetical protein
1069	 73.49	0	1163263..1163511	-	82	188580355	-	Mpop_1090	-	hypothetical protein
1070	 74.33	+1	1163806..1165176	-	456	188580356	-	Mpop_1091	-	Amidohydrolase 3
1071	 70.97	0	1165224..1166129	-	301	188580357	-	Mpop_1092	-	transcriptional regulator, LysR family
1072	 66.36	0	1166465..1167451	+	328	188580358	-	Mpop_1093	-	NMT1/THI5 like domain protein
1073	 71.78	0	1167457..1168356	+	299	188580359	-	Mpop_1094	-	ABC transporter related
1074	 70.06	0	1168353..1169147	+	264	188580360	-	Mpop_1095	-	binding-protein-dependent transport systems inner membrane component
1075	 67.50	0	1169214..1170287	+	357	188580361	-	Mpop_1096	-	Rieske (2Fe-2S) domain protein
1076	 69.87	0	1170287..1171255	+	322	188580362	-	Mpop_1097	-	NMT1/THI5 like domain protein
1077	 71.91	0	1171268..1172239	+	323	188580363	-	Mpop_1098	-	2OG-Fe(II) oxygenase
1078	 71.19	0	1172241..1173611	+	456	188580364	-	Mpop_1099	-	FAD linked oxidase domain protein
1079	 70.75	0	1173617..1174204	+	195	188580365	-	Mpop_1100	-	NAD(P)H dehydrogenase (quinone)
1080	 73.47	0	1174244..1175800	+	518	188580366	-	Mpop_1101	-	AMP-dependent synthetase and ligase
1081	 73.02	0	1175800..1176618	+	272	188580367	-	Mpop_1102	-	Creatininase
1082	 76.71	+1	1176608..1178260	+	550	188580368	-	Mpop_1103	-	peptidase S15
1083	 74.88	+1	1178347..1178553	+	68	188580369	-	Mpop_1104	-	hypothetical protein
1084	 80.37	+2	1178625..1178894	+	89	188580370	-	Mpop_1105	-	hypothetical protein
1085	 65.92	0	1178965..1180038	-	357	188580371	-	Mpop_1106	-	basic membrane lipoprotein
1086	 69.18	0	1180476..1180754	+	92	188580372	-	Mpop_1108	-	hypothetical protein
1087	 63.93	-1	1180992..1182233	-	413	188580373	-	Mpop_1109	-	monooxygenase FAD-binding
1088	 71.85	0	1182843..1184405	-	520	188580374	-	Mpop_1110	-	ABC transporter related
1089	 70.56	0	1184413..1185132	-	239	188580375	-	Mpop_1111	-	isochorismatase hydrolase
1090	 58.17	-2	1185184..1185489	+	101	188580376	-	Mpop_1112	-	protein of unknown function DUF497
1091	 67.25	0	1185796..1186824	-	342	188580377	-	Mpop_1114	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1092	 70.90	0	1186834..1187754	-	306	188580378	-	Mpop_1115	-	inner-membrane translocator
1093	 71.28	0	1187777..1188925	-	382	188580379	-	Mpop_1116	-	inner-membrane translocator
1094	 66.93	0	1189039..1190193	-	384	188580380	-	Mpop_1117	-	basic membrane lipoprotein
1095	 73.68	0	1190345..1191271	-	308	188580381	-	Mpop_1118	-	inner-membrane translocator
1096	 72.24	0	1191276..1192370	-	364	188580382	-	Mpop_1119	-	inner-membrane translocator
1097	 73.96	+1	1192430..1194034	-	534	188580383	-	Mpop_1120	-	ABC transporter related
1098	 71.79	0	1194034..1195398	-	454	188580384	-	Mpop_1121	-	amidohydrolase
1099	 63.25	-1	1195424..1196419	-	331	188580385	-	Mpop_1122	-	conserved hypothetical protein; putative signal peptide
1100	 73.27	0	1196944..1197624	+	226	188580386	-	Mpop_1123	-	isochorismatase hydrolase
1101	 75.49	+1	1197714..1197917	+	67	188580387	-	Mpop_1124	-	hypothetical protein
1102	 75.00	+1	1197914..1199329	+	471	188580388	-	Mpop_1125	-	amidohydrolase, AtzE family
1103	 71.81	0	1199326..1199733	+	135	188580389	-	Mpop_1126	-	hypothetical protein
1104	 69.81	0	1199824..1201221	-	465	188580390	-	Mpop_1127	-	xanthine permease
1105	 72.37	0	1202154..1203029	-	291	188580391	-	Mpop_1129	-	putative ABC-type Co2+ transport system, periplasmic component
1106	 71.68	0	1203153..1206161	-	1002	188580392	-	Mpop_1130	-	signal transduction histidine kinase
1107	 71.10	0	1206510..1208990	+	826	188580393	-	Mpop_1131	-	PAS/PAC sensor hybrid histidine kinase
1108	 74.79	+1	1209240..1210298	+	352	188580394	-	Mpop_1132	-	hypothetical protein
1109	 72.51	0	1210480..1210941	+	153	188580395	-	Mpop_1133	-	UreE urease accessory domain protein
1110	 74.30	+1	1210947..1211627	+	226	188580396	-	Mpop_1134	-	Urease accessory protein UreF
1111	 71.55	0	1211641..1212336	+	231	188580397	-	Mpop_1135	-	urease, gamma subunit
1112	 68.30	0	1212353..1214065	+	570	188580398	-	Mpop_1136	-	urease, alpha subunit
1113	 70.97	0	1214062..1214712	+	216	188580399	-	Mpop_1137	-	urease accessory protein UreG
1114	 74.12	+1	1214712..1215596	+	294	188580400	-	Mpop_1138	-	Urease accessory protein UreD
1115	 63.37	-1	1215785..1217026	+	413	188580401	-	Mpop_1139	-	urea ABC transporter, urea binding protein
1116	 70.98	0	1217103..1218260	-	385	188580402	-	Mpop_1140	-	protein of unknown function DUF1624
1117	 69.15	0	1218260..1220470	-	736	188580403	-	Mpop_1141	-	TonB-dependent siderophore receptor
1118	 76.53	+1	1221109..1222314	+	401	188580404	-	Mpop_1142	-	hypothetical protein
1119	 71.00	0	1222449..1222817	-	122	188580405	-	Mpop_1143	-	hypothetical protein
1120	 70.05	0	1222850..1223293	-	147	188580406	-	Mpop_1144	-	OsmC family protein
1121	 69.56	0	1223560..1224009	+	149	188580407	-	Mpop_1145	-	putative PAS/PAC sensor protein
1122	 66.11	0	1224112..1225362	+	416	188580408	-	Mpop_1146	-	formyl-CoA transferase
1123	 74.40	+1	1225611..1226825	+	404	188580409	-	Mpop_1147	-	CBS domain containing membrane protein
1124	 70.83	0	1226887..1227606	-	239	188580410	-	Mpop_1148	-	phospholipase/Carboxylesterase
1125	 68.49	0	1227868..1229622	-	584	188580411	-	Mpop_1149	-	oxalyl-CoA decarboxylase
1126	 67.35	0	1230040..1231365	-	441	188580412	-	Mpop_1150	-	major facilitator superfamily MFS_1
1127	 66.52	0	1231635..1232960	-	441	188580413	-	Mpop_1151	-	major facilitator superfamily MFS_1
1128	 68.33	0	1233389..1233808	+	139	188580414	-	Mpop_1152	-	CBS domain containing protein
1129	 66.33	0	1233960..1234253	+	97	188580415	-	Mpop_1153	-	hypothetical protein
1130	 72.23	0	1234278..1236146	+	622	188580416	-	Mpop_1154	-	hypothetical protein
1131	 63.08	-1	1236254..1236532	+	92	188580417	-	Mpop_1155	-	hypothetical protein
1132	 67.61	0	1236514..1236726	-	70	188580418	-	Mpop_1156	-	hypothetical protein
1133	 67.60	0	1236864..1238153	-	429	188580419	-	Mpop_1157	-	formyl-CoA transferase
1134	 66.67	0	1238537..1239220	+	227	188580420	-	Mpop_1158	-	transcriptional regulator, GntR family
1135	 70.57	0	1239367..1240494	-	375	188580421	-	Mpop_1159	-	cobalamin synthesis protein P47K
1136	 70.93	0	1240781..1242280	-	499	188580422	-	Mpop_1160	-	Serine-type D-Ala-D-Ala carboxypeptidase
1137	 70.46	0	1242541..1243173	+	210	188580423	-	Mpop_1161	-	Radical SAM domain protein
1138	 67.23	0	1243285..1243641	+	118	188580424	-	Mpop_1162	-	queuosine biosynthesis protein QueD
1139	 71.81	0	1243644..1244363	+	239	188580425	-	Mpop_1163	-	exsB protein
1140	 73.85	+1	1244388..1245125	+	245	188580426	-	Mpop_1164	-	LmbE family protein
1141	 74.77	+1	1245228..1246091	+	287	188580427	-	Mpop_1165	-	glycosyl transferase family 2
1142	 75.46	+1	1246111..1246326	-	71	188580428	-	Mpop_1166	-	hypothetical protein
1143	 69.40	0	1246683..1246865	+	60	188580429	-	Mpop_1167	-	hypothetical protein
1144	 70.61	0	1246866..1247093	+	75	188580430	-	Mpop_1168	-	hypothetical protein
69.70	MEAN

4.03	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.