IslandPathversion 1.0

IslandPath Analysis: Methylobacterium populi BJ001



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 69.70 STD DEV: 4.03
Methylobacterium populi BJ001, complete genome - 1..5800441
5314 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
972	 71.12	0	1053834..1054574	-	246	188580258	-	Mpop_0991	-	DNA repair protein RecO
973	 72.58	0	1054723..1055094	+	123	188580259	-	Mpop_0992	-	hypothetical protein
974	 72.55	0	1055306..1056019	+	237	188580260	-	Mpop_0993	-	ChaC family protein
975	 70.99	0	1056110..1056895	-	261	188580261	-	Mpop_0994	-	hypothetical protein
976	 68.91	0	1057136..1060657	-	1173	188580262	-	Mpop_0995	-	DNA polymerase III, alpha subunit
977	 60.95	-2	1060862..1060966	-	34	188580263	-	Mpop_0996	-	hypothetical protein
978	 60.73	-2	1061089..1061391	-	100	188580264	-	Mpop_0997	-	hypothetical protein
979	 72.71	0	1061781..1062491	-	236	188580265	-	Mpop_0999	-	ABC transporter related
980	 68.33	0	1062506..1063825	-	439	188580266	-	Mpop_1000	-	lipoprotein releasing system, transmembrane protein, LolC/E family
981	 68.10	0	1063838..1065163	-	441	188580267	-	Mpop_1001	-	prolyl-tRNA synthetase
982	 70.80	0	1065598..1065936	-	112	188580268	-	Mpop_1002	-	protein of unknown function DUF1467
983	 66.91	0	1066111..1066515	-	134	188580269	-	Mpop_1003	-	methylmalonyl-CoA epimerase
984	 68.94	0	1066570..1068243	-	557	188580270	-	Mpop_1004	-	beta-lactamase domain protein
985	 70.92	0	1068263..1069108	-	281	188580271	-	Mpop_1005	-	biotin--acetyl-CoA-carboxylase ligase
986	 66.67	0	1069115..1070554	-	479	188580272	-	Mpop_1006	-	proton-translocating NADH-quinone oxidoreductase, chain N
987	 65.40	-1	1070551..1072134	-	527	188580273	-	Mpop_1007	-	proton-translocating NADH-quinone oxidoreductase, chain M
988	 66.43	0	1072134..1074251	-	705	188580274	-	Mpop_1008	-	proton-translocating NADH-quinone oxidoreductase, chain L
989	 60.46	-2	1074314..1074619	-	101	188580275	-	Mpop_1009	-	NADH-ubiquinone oxidoreductase chain 4L
990	 66.02	0	1074625..1075245	-	206	188580276	-	Mpop_1010	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
991	 64.42	-1	1075453..1075941	-	162	188580277	-	Mpop_1011	-	NADH-quinone oxidoreductase, chain I
992	 65.20	-1	1075955..1076977	-	340	188580278	-	Mpop_1012	-	NADH dehydrogenase (quinone)
993	 69.67	0	1076990..1079056	-	688	188580279	-	Mpop_1013	-	NADH-quinone oxidoreductase, chain G
994	 67.05	0	1079091..1080392	-	433	188580280	-	Mpop_1014	-	NADH-quinone oxidoreductase, F subunit
995	 70.54	0	1080403..1081641	-	412	188580281	-	Mpop_1015	-	NADH-quinone oxidoreductase, E subunit
996	 65.49	-1	1081661..1082851	-	396	188580282	-	Mpop_1016	-	NADH dehydrogenase I, D subunit
997	 66.21	0	1082863..1083522	-	219	188580283	-	Mpop_1017	-	NADH (or F420H2) dehydrogenase, subunit C
998	 68.20	0	1083535..1084122	-	195	188580284	-	Mpop_1018	-	NADH-quinone oxidoreductase, B subunit
999	 58.47	-2	1084175..1084540	-	121	188580285	-	Mpop_1019	-	NADH-ubiquinone/plastoquinone oxidoreductase chain 3
1000	 69.12	0	1085374..1085862	+	162	188580286	-	Mpop_1020	-	SCP-like extracellular
1001	 61.38	-2	1085906..1086340	-	144	188580287	-	Mpop_1021	-	pseudoazurin
1002	 67.53	0	1086638..1090111	+	1157	188580288	-	Mpop_1022	-	carbamoyl-phosphate synthase, large subunit
1003	 67.91	0	1090242..1090724	+	160	188580289	-	Mpop_1023	-	transcription elongation factor GreA
1004	 76.22	+1	1090730..1091221	+	163	188580290	-	Mpop_1024	-	hypothetical protein
1005	 71.73	0	1091255..1092340	+	361	188580291	-	Mpop_1025	-	protein of unknown function DUF1022
1006	 67.59	0	1092506..1093480	+	324	188580292	-	Mpop_1026	-	thioredoxin reductase
1007	 67.00	0	1093839..1094729	+	296	188580293	-	Mpop_1027	-	transcriptional regulator, LysR family
1008	 69.30	0	1094845..1095300	+	151	188580294	-	Mpop_1028	-	3-dehydroquinate dehydratase, type II
1009	 70.44	0	1095319..1095795	+	158	188580295	-	Mpop_1029	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
1010	 68.35	0	1095806..1097173	+	455	188580296	-	Mpop_1030	-	acetyl-CoA carboxylase, biotin carboxylase
1011	 69.10	0	1097329..1097985	+	218	188580297	-	Mpop_1031	-	Leucyltransferase
1012	 72.92	0	1098105..1098728	-	207	188580298	-	Mpop_1032	-	transcriptional regulator, TetR family
1013	 69.00	0	1098776..1099246	+	156	188580299	-	Mpop_1033	-	hypothetical protein
1014	 68.18	0	1099253..1099912	-	219	188580300	-	Mpop_1034	-	conserved hypothetical proteinn
1015	 66.48	0	1100013..1101110	-	365	188580301	-	Mpop_1035	-	hypothetical protein
1016	 70.02	0	1101227..1101643	-	138	188580302	-	Mpop_1036	-	NADH:ubiquinone oxidoreductase 17.2 kD subunit
1017	 67.50	0	1102161..1105892	+	1243	188580303	-	Mpop_1037	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
1018	 70.60	0	1106109..1107533	-	474	188580304	-	Mpop_1038	-	integral membrane sensor signal transduction histidine kinase
1019	 69.66	0	1107530..1108198	-	222	188580305	-	Mpop_1039	-	two component transcriptional regulator, winged helix family
1020	 71.73	0	1108341..1109012	+	223	188580306	-	Mpop_1040	-	hypothetical protein
1021	 60.46	-2	1109294..1109776	-	160	188580307	-	Mpop_1042	-	transcriptional regulator, MarR family
1022	 65.41	-1	1109850..1111202	+	450	188580308	-	Mpop_1043	-	homogentisate 1,2-dioxygenase
1023	 69.37	0	1111377..1112708	+	443	188580309	-	Mpop_1044	-	major facilitator superfamily MFS_1
1024	 70.25	0	1112720..1114030	+	436	188580310	-	Mpop_1045	-	fumarylacetoacetase
1025	 68.70	0	1114027..1114665	+	212	188580311	-	Mpop_1046	-	maleylacetoacetate isomerase
1026	 63.10	-1	1115072..1115995	+	307	188580312	-	Mpop_1047	-	MetA-pathway of phenol degradation-like protein
1027	 62.20	-1	1116665..1118344	+	559	188580313	-	Mpop_1048	-	methyl-accepting chemotaxis sensory transducer
1028	 67.80	0	1118558..1118998	-	146	188580314	-	Mpop_1049	-	PRC-barrel domain protein
1029	 71.94	0	1119073..1119546	-	157	188580315	-	Mpop_1050	-	protein of unknown function DUF937
1030	 73.33	0	1119599..1119703	-	34	188580316	-	Mpop_1051	-	hypothetical protein
1031	 76.56	+1	1119725..1120108	-	127	188580317	-	Mpop_1052	-	CsbD family protein
1032	 64.71	-1	1120232..1120435	-	67	188580318	-	Mpop_1053	-	CsbD family protein
1033	 73.57	0	1120524..1121435	-	303	188580319	-	Mpop_1054	-	conserved hypothetical membrane spanning protein
1034	 71.05	0	1121479..1121820	-	113	188580320	-	Mpop_1055	-	CsbD family protein
1035	 70.51	0	1121926..1122081	-	51	188580321	-	Mpop_1056	-	hypothetical protein
1036	 67.62	0	1122177..1123637	-	486	188580322	-	Mpop_1057	-	transcriptional regulator, LuxR family
1037	 70.30	0	1123973..1124743	-	256	188580323	-	Mpop_1058	-	Glyoxalase/bleomycin resistance protein/dioxygenase
1038	 68.63	0	1124740..1125654	-	304	188580324	-	Mpop_1059	-	Gluconolactonase
1039	 68.39	0	1125659..1126123	-	154	188580325	-	Mpop_1060	-	hypothetical protein
1040	 70.81	0	1126120..1126602	-	160	188580326	-	Mpop_1061	-	DoxX family protein
1041	 67.74	0	1126760..1128340	+	526	188580327	-	Mpop_1062	-	glucose-methanol-choline oxidoreductase
1042	 71.19	0	1128449..1129045	-	198	188580328	-	Mpop_1063	-	electron transport protein SCO1/SenC
1043	 67.02	0	1129038..1130156	-	372	188580329	-	Mpop_1064	-	beta-lactamase domain protein
1044	 72.50	0	1130449..1131699	-	416	188580330	-	Mpop_1065	-	hypothetical protein
1045	 69.92	0	1131705..1132319	-	204	188580331	-	Mpop_1066	-	hypothetical protein
1046	 76.01	+1	1132316..1134145	-	609	188580332	-	Mpop_1067	-	hypothetical protein
1047	 70.68	0	1134133..1141614	-	2493	188580333	-	Mpop_1068	-	putative multicopper oxidase
1048	 70.56	0	1142235..1143647	+	470	188580334	-	Mpop_1069	-	urate catabolism protein
1049	 71.06	0	1143680..1144612	-	310	188580335	-	Mpop_1070	-	transcriptional regulator, LysR family
1050	 70.98	0	1144770..1146020	+	416	188580336	-	Mpop_1071	-	protein of unknown function DUF989
1051	 72.26	0	1146067..1146906	+	279	188580337	-	Mpop_1072	-	allantoin catabolism protein
1052	 71.49	0	1146903..1147400	+	165	188580338	-	Mpop_1073	-	Ureidoglycolate hydrolase
1053	 70.25	0	1147524..1148165	+	213	188580339	-	Mpop_1074	-	transcriptional regulator, TetR family
1054	 65.52	-1	1148380..1149510	+	376	188580340	-	Mpop_1075	-	Luciferase-like monooxygenase
1055	 70.97	0	1149510..1150253	+	247	188580341	-	Mpop_1076	-	isochorismatase hydrolase
1056	 68.96	0	1150266..1150658	+	130	188580342	-	Mpop_1077	-	Endoribonuclease L-PSP
1057	 73.95	+1	1150663..1151445	+	260	188580343	-	Mpop_1078	-	alpha/beta hydrolase fold
1058	 76.03	+1	1151476..1152084	+	202	188580344	-	Mpop_1079	-	flavin reductase domain protein FMN-binding
1059	 72.83	0	1152088..1152606	+	172	188580345	-	Mpop_1080	-	hypothetical protein
1060	 70.80	0	1152759..1153628	+	289	188580346	-	Mpop_1081	-	ABC transporter related
1061	 72.55	0	1153618..1154535	+	305	188580347	-	Mpop_1082	-	binding-protein-dependent transport systems inner membrane component
1062	 73.19	0	1154532..1155497	+	321	188580348	-	Mpop_1083	-	binding-protein-dependent transport systems inner membrane component
1063	 69.05	0	1155563..1156567	+	334	188580349	-	Mpop_1084	-	NMT1/THI5 like domain protein
1064	 75.86	+1	1156709..1157524	+	271	188580350	-	Mpop_1085	-	molybdopterin dehydrogenase FAD-binding
1065	 72.77	0	1157521..1160307	+	928	188580351	-	Mpop_1086	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1066	 69.87	0	1160304..1161677	+	457	188580352	-	Mpop_1087	-	guanine deaminase
1067	 72.08	0	1161691..1162614	-	307	188580353	-	Mpop_1088	-	transcriptional regulator, LysR family
1068	 74.89	+1	1162795..1163025	-	76	188580354	-	Mpop_1089	-	hypothetical protein
1069	 73.49	0	1163263..1163511	-	82	188580355	-	Mpop_1090	-	hypothetical protein
1070	 74.33	+1	1163806..1165176	-	456	188580356	-	Mpop_1091	-	Amidohydrolase 3
1071	 70.97	0	1165224..1166129	-	301	188580357	-	Mpop_1092	-	transcriptional regulator, LysR family
69.70	MEAN

4.03	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.