IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
929	 42.34	0	1095109..1097196	+	695	21227031	kefC	MM_0929	-	glutathione-regulated potassium-efflux system protein
930	 43.53	0	1097423..1097785	-	120	21227032	-	MM_0930	-	nitrogen regulatory protein P-II
931	 43.44	0	1097775..1098506	-	243	21227033	-	MM_0931	-	hypothetical protein
932	 45.31	0	1098503..1099195	-	230	21227034	-	MM_0932	-	hypothetical protein
933	 44.81	0	1099526..1101538	-	670	21227035	kefC	MM_0933	-	glutathione-regulated potassium-efflux system protein
934	 47.38	0	1102502..1103761	+	419	21227036	-	MM_0934	-	lysine 2,3-aminomutase
935	 42.52	0	1103966..1104781	+	271	21227037	-	MM_0935	-	Beta-lysine acetyltransferase
936	 39.48	0	1104803..1105420	-	205	21227038	-	MM_0936	-	hypothetical protein
937	 46.05	0	1105539..1107488	-	649	21227039	-	MM_0937	-	putative flagella related protein J
938	 43.40	0	1107501..1109198	-	565	21227040	-	MM_0938	-	putative flagella related protein FlaI
939	 44.21	0	1110367..1111083	-	238	21227041	-	MM_0939	-	putative flagella related protein H
940	 47.51	0	1112100..1113728	+	542	21227042	-	MM_0940	-	putative flavoprotein
941	 46.80	0	1115096..1116454	-	452	21227043	-	MM_0941	-	adenylosuccinate lyase
942	 35.98	-1	1116755..1117018	-	87	21227044	-	MM_0942	-	hypothetical protein
943	 48.25	0	1117122..1117865	+	247	21227045	-	MM_0943	-	geranylgeranylglyceryl phosphate synthase-like protein
944	 44.22	0	1118334..1120097	+	587	21227046	-	MM_0944	-	methyl coenzyme M reductase system, component A2
945	 43.70	0	1120251..1120925	-	224	21227047	-	MM_0945	-	iron-sulfur flavoprotein
946	 42.45	0	1121116..1121784	-	222	21227048	-	MM_0946	-	putative NADPH-flavin oxidoreductase
947	 44.69	0	1121914..1123119	-	401	21227049	-	MM_0947	-	hypothetical protein
948	 42.29	0	1123813..1125006	+	397	21227050	-	MM_0948	-	sensory transduction histidine kinase
949	 43.20	0	1125183..1126439	-	418	21227051	-	MM_0949	-	hypothetical protein
950	 42.86	0	1126588..1127469	-	293	21227052	-	MM_0950	-	ABC transporter, ATP-binding protein
951	 43.62	0	1127890..1129104	-	404	21227053	-	MM_0951	-	ABC transporter, permease protein
952	 41.53	0	1129151..1130395	-	414	21227054	-	MM_0952	-	hypothetical protein
953	 43.26	0	1130422..1131126	-	234	21227055	-	MM_0953	-	ABC transporter, ATP-binding protein
954	 36.41	-1	1131813..1132202	-	129	21227056	-	MM_0954	-	hypothetical protein
955	 42.09	0	1134999..1135832	-	277	21227057	-	MM_0955	-	ABC transporter, permease protein
956	 40.30	0	1135829..1136818	-	329	21227058	-	MM_0956	-	ABC transporter, ATP-binding protein
957	 48.94	+1	1137526..1138935	+	469	21227059	-	MM_0957	-	ammonium transporter
958	 44.54	0	1138938..1139285	+	115	21227060	-	MM_0958	-	nitrogen regulatory protein P-II
959	 41.49	0	1139362..1139790	+	142	21227061	-	MM_0959	-	hypothetical protein
960	 38.67	0	1140024..1140323	+	99	21227062	-	MM_0960	-	putative small heat shock protein
961	 38.19	-1	1140391..1140699	+	102	21227063	-	MM_0961	-	putative small heat shock protein
962	 43.42	0	1140845..1141072	+	75	21227064	-	MM_0962	-	hypothetical protein
963	 39.77	0	1141312..1141824	-	170	21227065	-	MM_0963	-	integral membrane protein
964	 46.73	0	1142131..1143474	+	447	21227066	-	MM_0964	-	glutamine synthetase
965	 36.49	-1	1143742..1143963	+	73	21227067	-	MM_0965	-	hypothetical protein
966	 46.72	0	1144225..1145322	+	365	21227068	-	MM_0966	-	glutamate synthase, large chain
967	 52.12	+1	1145319..1146830	+	503	21227069	-	MM_0967	-	glutamate synthase, large chain
968	 51.88	+1	1146833..1147576	+	247	21227070	-	MM_0968	-	glutamate synthase, large chain
969	 52.46	+1	1147583..1148617	+	344	21227071	-	MM_0969	-	coenzyme F420 hydrogenase beta subunit
970	 39.95	0	1148790..1149665	-	291	21227072	-	MM_0970	-	hypothetical protein
971	 38.00	-1	1149719..1150597	-	292	21227073	-	MM_0971	-	hypothetical protein
972	 43.88	0	1151247..1151483	+	78	21227074	-	MM_0972	-	hypothetical protein
973	 36.87	-1	1152403..1153392	+	329	21227075	-	MM_0973	-	hypothetical protein
974	 44.72	0	1154008..1155210	-	400	21227076	-	MM_0974	-	Xaa-Pro aminopeptidase
975	 44.26	0	1155475..1156014	+	179	21227077	-	MM_0975	-	hypothetical protein
976	 45.44	0	1156103..1157836	-	577	21227078	-	MM_0976	-	putative protease
977	 44.77	0	1158274..1158981	+	235	21227079	-	MM_0977	-	F420-dependent NADP reductase
978	 34.63	-1	1159051..1159281	+	76	21227080	-	MM_0978	-	hypothetical protein
979	 53.09	+1	1159538..1160023	+	161	21227081	-	MM_0979	-	heterodisulfide reductase subunit HDRC
980	 46.65	0	1160001..1160939	+	312	21227082	-	MM_0980	-	heterodisulfide reductase subunit HDRB
981	 45.69	0	1160983..1161411	-	142	21227083	-	MM_0981	-	Iron-sulfur binding protein
982	 40.45	0	1161542..1161850	-	102	21227084	-	MM_0982	-	transposase
983	 41.71	0	1161959..1162567	-	202	21227085	-	MM_0983	-	hypothetical protein
984	 46.41	0	1162682..1163377	-	231	21227086	-	MM_0984	-	hypothetical protein
985	 48.04	0	1163586..1164530	-	314	21227087	-	MM_0985	-	hypothetical protein
986	 46.20	0	1164527..1165381	-	284	21227088	-	MM_0986	-	hypothetical protein
987	 47.27	0	1165427..1165792	-	121	21227089	-	MM_0987	-	hypothetical protein
988	 49.18	+1	1165887..1166252	-	121	21227090	-	MM_0988	-	hypothetical protein
989	 47.11	0	1166462..1166824	+	120	21227091	-	MM_0989	-	HTH DNA-binding protein
990	 49.17	+1	1166808..1167716	+	302	21227092	-	MM_0990	-	nucleotide-binding protein
991	 44.78	0	1168022..1168519	+	165	21227093	-	MM_0991	-	Thiol-disulfide isomerase/thioredoxin
992	 47.31	0	1168801..1169451	+	216	21227094	-	MM_0992	-	cytochrome c-type biogenesis protein
993	 33.11	-2	1169524..1169967	-	147	21227095	-	MM_0993	-	hypothetical protein
994	 47.81	0	1170174..1170905	-	243	21227096	-	MM_0994	-	precorrin-8X methylmutase
995	 48.37	0	1170895..1171692	-	265	21227097	-	MM_0995	-	precorrin-3B C17-methyltransferase
996	 48.66	+1	1171661..1172032	-	123	21227098	-	MM_0996	-	cobalamin biosynthesis protein G
997	 49.62	+1	1172097..1172489	-	130	21227099	-	MM_0997	-	cobalamin biosynthesis protein CbiG
998	 48.29	0	1172630..1173358	-	242	21227100	-	MM_0998	-	precorrin-4 C11-methyltransferase
999	 44.01	0	1173537..1174145	-	202	21227101	-	MM_0999	-	cobalt-precorrin-2 C(20)-methyltransferase
1000	 46.13	0	1174236..1174790	-	184	21227102	-	MM_1000	-	precorrin-6Y C5,15-methyltransferase [decarboxylating]
1001	 34.70	-1	1175368..1175586	-	72	21227103	-	MM_1001	-	hypothetical protein
1002	 44.97	0	1175568..1176890	+	440	21227104	-	MM_1002	-	2-isopropylmalate synthase
1003	 48.98	+1	1177056..1178084	-	342	21227105	-	MM_1003	-	isocitrate dehydrogenase [NADP]
1004	 46.14	0	1178389..1179231	+	280	21227106	-	MM_1004	-	putative molybdenum cofactor biosynthesis protein
1005	 45.47	0	1179579..1180064	-	161	21227107	-	MM_1005	-	Zinc finger protein
1006	 47.54	0	1180095..1181417	+	440	21227108	-	MM_1006	-	proteasome-activating nucleotidase
1007	 43.82	0	1181553..1182143	+	196	21227109	-	MM_1007	-	hypothetical protein
1008	 49.24	+1	1182688..1183812	+	374	21227110	ftsZ	MM_1008	-	cell division protein FtsZ
1009	 47.69	0	1184237..1184452	+	71	21227111	secE	MM_1009	-	preprotein translocase subunit SecE
1010	 45.65	0	1184437..1184907	+	156	21227112	nusG	MM_1010	-	transcription antitermination protein NusG
1011	 47.94	0	1185028..1185513	+	161	21227113	rpl11p	MM_1011	-	50S ribosomal protein L11P
1012	 47.35	0	1185755..1186396	+	213	21227114	rpl1P	MM_1012	-	50S ribosomal protein L1P
1013	 51.15	+1	1186397..1187440	+	347	21227115	rplP0	MM_1013	-	acidic ribosomal protein P0
1014	 55.56	+2	1187483..1187797	+	104	21227116	rpl12p	MM_1014	-	50S ribosomal protein L12P
1015	 43.30	0	1188086..1189219	+	377	21227117	-	MM_1015	-	molybdenum cofactor biosynthesis protein
1016	 37.65	-1	1190055..1190471	+	138	21227118	-	MM_1016	-	putative ribosomal-protein-alanine acetyltransferase
1017	 47.28	0	1190663..1191451	-	262	21227119	-	MM_1017	-	hypothetical protein
1018	 40.24	0	1191574..1192080	+	168	21227120	-	MM_1018	-	hypothetical protein
1019	 46.64	0	1192183..1192926	-	247	21227121	-	MM_1019	-	Iron-sulfur cluster-binding protein
1020	 41.72	0	1193212..1193688	-	158	21227122	-	MM_1020	-	methylated-DNA--protein-cysteine methyltransferase
1021	 32.57	-2	1193677..1194201	+	174	21227123	-	MM_1021	-	hypothetical protein
1022	 46.58	0	1194690..1195361	+	223	21227124	-	MM_1022	-	hypothetical protein
1023	 49.32	+1	1195438..1195656	+	72	21227125	-	MM_1023	-	hypothetical protein
1024	 42.12	0	1195815..1196918	+	367	21227126	-	MM_1024	-	hypothetical protein
1025	 52.68	+1	1197056..1198342	-	428	161485678	thiC	MM_1025	-	thiamine biosynthesis protein ThiC
1026	 43.14	0	1198756..1199673	-	305	21227128	-	MM_1026	-	dolichol-phosphate mannosyltransferase
1027	 44.75	0	1199798..1200349	-	183	21227129	-	MM_1027	-	transcription factor
1028	 45.47	0	1200429..1200980	-	183	21227130	-	MM_1028	-	transcription factor
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.