IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.57   STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
46	 50.10	+1	60558..61070	+	170	21226148	-	MM_0046	-	hypothetical protein
47	 49.65	+1	61663..63090	-	475	21226149	-	MM_0047	-	acetylornithine aminotransferase
48	 48.61	+1	63093..64571	-	492	21226150	-	MM_0048	-	aldehyde dehydrogenase
49	 42.93	0	65089..65484	-	131	21226151	-	MM_0049	-	hypothetical protein
50	 47.11	0	66148..68049	-	633	21226152	-	MM_0050	-	glutamyl-tRNA(Gln) amidotransferase subunit E
51	 41.73	0	68755..69171	+	138	21226153	-	MM_0051	-	hypothetical protein
52	 35.58	-1	69361..70605	-	414	21226154	-	MM_0052	-	transposase
53	 34.27	-1	70675..70887	-	70	21226155	-	MM_0053	-	hypothetical protein
54	 45.97	0	71424..71882	+	152	21226156	-	MM_0054	-	universal stress protein
55	 50.37	+1	72307..73809	-	500	21226157	-	MM_0055	-	tungsten formylmethanofuran dehydrogenase subunit F
56	 50.25	+1	73806..76187	-	793	21226158	-	MM_0056	-	heterodisulfate reductase, subunit A
57	 45.39	0	77008..77289	+	93	21226159	-	MM_0057	-	ferredoxin-thioredoxin reductase, catalytic chain
58	 49.46	+1	77762..78226	+	154	21226160	-	MM_0058	-	tungsten formylmethanofuran dehydrogenase subunit G
59	 46.02	0	78236..79480	+	414	21226161	-	MM_0059	-	tungsten formylmethanofuran dehydrogenase subunit B
60	 44.61	0	79480..79878	+	132	21226162	-	MM_0060	-	tungsten formylmethanofuran dehydrogenase subunit D
61	 39.65	0	80012..80296	+	94	21226163	-	MM_0061	-	hypothetical protein
62	 47.15	0	80558..81223	-	221	21226164	-	MM_0062	-	SAM-dependent methyltransferase
63	 43.22	0	81389..82753	-	454	21226165	-	MM_0063	-	surface layer protein B
64	 42.45	0	83342..85348	-	668	21226166	-	MM_0064	-	surface layer protein B
65	 23.27	-2	85364..85522	-	52	21226167	-	MM_0065	-	hypothetical protein
66	 41.75	0	85907..89065	-	1052	21226168	-	MM_0066	-	hypothetical protein
67	 48.09	0	89713..91257	-	514	21226169	-	MM_0067	-	hypothetical protein
68	 49.27	+1	91254..92966	-	570	21226170	-	MM_0068	-	N-methylhydantoinase (ATP-hydrolyzing)
69	 45.94	0	93523..94458	-	311	21226171	-	MM_0069	-	Sodium-dependent transporter
70	 44.95	0	94842..95573	+	243	21226172	-	MM_0070	-	putative ribosomal RNA methyltransferase
71	 44.54	0	95590..96258	+	222	21226173	-	MM_0071	-	hypothetical protein
72	 49.06	+1	96455..98158	-	567	21226174	-	MM_0072	-	thermosome subunit
73	 47.80	0	98569..99273	-	234	21226175	-	MM_0073	-	ribose 5-phosphate isomerase
74	 48.84	+1	99386..100720	-	444	21226176	aspC	MM_0074	-	aspartyl-tRNA synthetase
75	 42.74	0	101277..101648	+	123	21226177	-	MM_0075	-	hypothetical protein
76	 40.61	0	101875..102135	+	86	21226178	-	MM_0076	-	hypothetical protein
77	 44.92	0	102801..103499	+	232	21226179	-	MM_0077	-	hypothetical protein
78	 44.15	0	103957..104409	-	150	21226180	-	MM_0078	-	xanthine-guanine phosphoribosyltransferase
79	 46.60	0	105080..105976	+	298	21226181	-	MM_0079	-	hypothetical protein
80	 43.94	0	106128..107258	-	376	21226182	-	MM_0080	-	hypothetical protein
81	 48.68	+1	107742..109103	-	453	21226183	-	MM_0081	-	hypothetical protein
82	 47.31	0	109130..109408	-	92	21226184	-	MM_0082	-	hypothetical protein
83	 15.96	-2	109586..109798	-	70	21226185	-	MM_0083	-	hypothetical protein
84	 42.75	0	109844..110374	-	176	21226186	aroK	MM_0084	-	shikimate kinase
85	 39.62	0	110609..110974	-	121	21226187	-	MM_0085	-	hypothetical protein
86	 49.25	+1	111384..111917	-	177	21226188	-	MM_0086	-	tRNA 2'-O-methylase
87	 47.44	0	112009..113532	-	507	21226189	-	MM_0087	-	thymidine phosphorylase
88	 45.21	0	113888..114763	-	291	21226190	-	MM_0088	-	transporter
89	 38.16	-1	115136..115342	-	68	21226191	-	MM_0089	-	hypothetical protein
90	 39.92	0	115984..116226	-	80	21226192	-	MM_0090	-	hypothetical protein
91	 46.56	0	117271..118449	-	392	21226193	-	MM_0091	-	ABC transporter permease protein
92	 46.13	0	118499..119647	-	382	21226194	-	MM_0092	-	hypothetical protein
93	 46.80	0	120209..121708	+	499	21226195	-	MM_0093	-	cobyric acid synthase
94	 52.79	+1	122045..122599	-	184	21226196	-	MM_0094	-	hypothetical protein
95	 39.39	0	123133..123825	+	230	21226197	-	MM_0095	-	hypothetical protein
96	 35.62	-1	124395..125663	+	422	21226198	-	MM_0096	-	transposase
97	 49.15	+1	125736..126740	-	334	21226199	-	MM_0097	-	alanine dehydrogenase
98	 45.01	0	126929..127639	+	236	21226200	-	MM_0098	-	hypothetical protein
99	 49.51	+1	127683..128300	-	205	21226201	-	MM_0099	-	O-linked N-acetylglucosamine transferase
100	 44.36	0	128355..128735	-	126	21226202	-	MM_0100	-	hypothetical protein
101	 43.50	0	129028..129381	-	117	21226203	-	MM_0101	-	hypothetical protein
102	 42.94	0	129795..130616	+	273	21226204	-	MM_0102	-	Serine/threonine protein phosphatase
103	 47.22	0	130954..132141	-	395	21226205	-	MM_0103	-	O-linked N-acetylglucosamine transferase
104	 27.78	-2	132185..132454	-	89	21226206	-	MM_0104	-	hypothetical protein
105	 51.46	+1	133004..133174	-	56	21226207	-	MM_0105	-	hypothetical protein
106	 45.68	0	133816..134220	+	134	21226208	fxsA	MM_0106	-	FxsA
107	 46.72	0	134330..135046	-	238	21226209	-	MM_0107	-	hypothetical protein
108	 43.78	0	135048..135449	-	133	21226210	-	MM_0108	-	hypothetical protein
109	 46.54	0	135605..136876	+	423	21226211	-	MM_0109	-	cysteine desulfhydrase
110	 45.92	0	136866..137294	+	142	21226212	-	MM_0110	-	NifU protein
111	 44.72	0	137429..138403	+	324	21226213	-	MM_0111	-	ribosomal protein S6 modification protein
112	 45.60	0	138650..139024	+	124	21226214	-	MM_0112	-	peptidyl-tRNA hydrolase
113	 46.44	0	139146..140381	+	411	21226215	-	MM_0113	-	hypothetical protein
114	 46.47	0	140925..142241	+	438	21226216	truD	MM_0114	-	tRNA pseudouridine synthase D
115	 47.83	0	142500..143927	-	475	21226217	-	MM_0115	-	putative transmembrane efflux protein
116	 43.22	0	143890..144324	-	144	21226218	-	MM_0116	-	MarR family transcriptional regulator
117	 37.30	-1	144677..145180	-	167	21226219	-	MM_0117	-	hypothetical protein
118	 48.04	0	146550..148154	-	534	21226220	-	MM_0118	-	CTP synthetase
119	 44.31	0	148702..149466	-	254	21226221	-	MM_0119	-	hypothetical protein
120	 48.21	0	149475..149642	-	55	21226222	-	MM_0120	-	hypothetical protein
121	 50.34	+1	150337..152223	+	628	21226223	-	MM_0121	-	carbon monoxide dehydrogenase
122	 47.51	0	152239..152781	+	180	21226224	-	MM_0122	-	Iron-sulfur protein
123	 45.02	0	153174..153635	+	153	21226225	-	MM_0123	-	universal stress protein
124	 46.01	0	153778..154716	+	312	21226226	-	MM_0124	-	hypothetical protein
125	 47.87	0	155445..155891	+	148	21226227	-	MM_0125	-	universal stress protein
126	 47.06	0	156028..157338	-	436	21226228	-	MM_0126	-	PmbA protein
127	 46.90	0	157341..158696	-	451	21226229	-	MM_0127	-	Zinc metalloprotease
128	 49.18	+1	158684..160753	-	689	21226230	-	MM_0128	-	ATP-dependent protease Lon
129	 43.14	0	161203..161967	+	254	21226231	-	MM_0129	-	hypothetical protein
130	 46.84	0	161975..162211	-	78	21226232	-	MM_0130	-	hypothetical protein
131	 42.02	0	162643..163413	+	256	21226233	-	MM_0131	-	hypothetical protein
132	 42.65	0	164185..164592	+	135	21226234	-	MM_0132	-	hypothetical protein
133	 48.68	+1	164917..166167	+	416	21226235	-	MM_0133	-	threonine synthase
134	 46.89	0	166296..167453	+	385	21226236	-	MM_0134	-	sulfopyruvate decarboxylase alpha chain
135	 49.20	+1	167522..168838	-	438	21226237	-	MM_0135	-	ferredoxin oxidoreductase
136	 40.23	0	169165..169773	-	202	21226238	-	MM_0136	-	Zn-dependent hydrolase
137	 41.31	0	171646..171858	+	70	21226239	-	MM_0137	-	hypothetical protein
138	 40.79	0	172681..173136	-	151	21226240	-	MM_0138	-	hypothetical protein
139	 46.52	0	174138..175199	-	353	21226241	cycK	MM_0139	-	cytochrome c-type biogenesis protein
140	 46.87	0	175260..176249	-	329	21226242	-	MM_0140	-	putative cytochrome c biogenesis factors
141	 47.73	0	176529..177056	+	175	21226243	-	MM_0141	-	hypothetical protein
142	 47.52	0	177146..177709	+	187	21226244	-	MM_0142	-	orotate phosphoribosyltransferase
143	 44.23	0	177870..178181	-	103	21226245	-	MM_0143	-	4-carboxymuconolactone decarboxylase
144	 46.94	0	178642..179949	+	435	21226246	-	MM_0144	-	phosphoribosylamine--glycine ligase
145	 49.39	+1	180118..181026	+	302	161485684	-	MM_0145	-	ornithine carbamoyltransferase
43.57	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.