IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
850	 44.44	0	1004285..1004518	-	77	21226952	-	MM_0850	-	hypothetical protein
851	 32.24	-2	1004835..1005200	-	121	21226953	-	MM_0851	-	hypothetical protein
852	 44.73	0	1005507..1006901	-	464	21226954	-	MM_0852	-	deoxyribodipyrimidine photolyase
853	 47.50	0	1007115..1007855	-	246	21226955	-	MM_0853	-	hypothetical protein
854	 45.38	0	1007852..1009138	-	428	21226956	cdc48	MM_0854	-	cell division cycle protein 48-like protein
855	 44.82	0	1009614..1010327	+	237	21226957	-	MM_0855	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
856	 48.00	0	1010574..1011800	-	408	21226958	-	MM_0856	-	hypothetical protein
857	 44.26	0	1011797..1012162	-	121	21226959	-	MM_0857	-	hypothetical protein
858	 42.39	0	1012361..1012669	-	102	21226960	-	MM_0858	-	translation initiation factor Sui1
859	 40.83	0	1013221..1013460	+	79	21226961	-	MM_0859	-	hypothetical protein
860	 49.67	+1	1014013..1016007	+	664	21226962	-	MM_0860	-	phosphoribosylformylglycinamidine synthase II
861	 46.97	0	1016498..1017634	+	378	21226963	-	MM_0861	-	Alpha-amylase
862	 45.28	0	1017631..1018827	+	398	21226964	-	MM_0862	-	Alpha-amylase
863	 43.99	0	1018878..1019684	+	268	21226965	-	MM_0863	-	hypothetical protein
864	 45.42	0	1019681..1021657	+	658	21226966	-	MM_0864	-	glucoamylase
865	 45.07	0	1021868..1023136	-	422	21226967	-	MM_0865	-	seryl-tRNA synthetase
866	 44.85	0	1023258..1024490	-	410	21226968	-	MM_0866	-	periplasmic serine protease
867	 48.84	+1	1024811..1026958	+	715	161485679	metG	MM_0867	-	methionyl-tRNA synthetase
868	 44.63	0	1027183..1027713	-	176	21226970	-	MM_0868	-	adenylate cyclase
869	 50.38	+1	1027827..1028225	-	132	21226971	-	MM_0869	-	hypothetical protein
870	 50.72	+1	1028232..1029404	-	390	21226972	-	MM_0870	-	acetyl-CoA acetyltransferase
871	 50.38	+1	1029422..1030471	-	349	21226973	-	MM_0871	-	hypothetical protein
872	 47.37	0	1030512..1031252	-	246	21226974	-	MM_0872	-	putative transcriptional regulator
873	 45.74	0	1031391..1032212	+	273	21226975	-	MM_0873	-	hypothetical protein
874	 33.07	-2	1032667..1033419	+	250	21226976	-	MM_0874	-	hypothetical protein
875	 38.40	-1	1033935..1034171	+	78	21226977	-	MM_0875	-	hypothetical protein
876	 37.80	-1	1035461..1036198	+	245	21226978	-	MM_0876	-	hypothetical protein
877	 35.14	-1	1036566..1036898	+	110	21226979	-	MM_0877	-	transposase
878	 32.00	-2	1036843..1036992	+	49	21226980	-	MM_0878	-	transposase
879	 32.38	-2	1037063..1037272	+	69	21226981	-	MM_0879	-	hypothetical protein
880	 42.44	0	1038618..1039397	+	259	21226982	-	MM_0880	-	hypothetical protein
881	 32.49	-2	1039984..1041288	-	434	21226983	-	MM_0881	-	transposase
882	 42.12	0	1041468..1042400	+	310	21226984	-	MM_0882	-	hypothetical protein
883	 49.61	+1	1042702..1044606	+	634	21226985	-	MM_0883	-	hypothetical protein
884	 45.10	0	1044767..1045021	-	84	21226986	-	MM_0884	-	hypothetical protein
885	 29.91	-2	1045229..1045462	-	77	21226987	-	MM_0885	-	hypothetical protein
886	 46.63	0	1045583..1046680	-	365	21226988	-	MM_0886	-	DNA polymerase IV
887	 48.78	+1	1046973..1047956	+	327	21226989	cbiO	MM_0887	-	cobalt transporter, ATP-binding protein
888	 46.84	0	1048009..1048815	+	268	21226990	cbiQ	MM_0888	-	cobalt transport protein
889	 40.34	0	1048887..1050470	-	527	21226991	-	MM_0889	-	hypothetical protein
890	 43.57	0	1050955..1051872	-	305	21226992	-	MM_0890	-	putative methyltransferase
891	 42.29	0	1051865..1052746	-	293	21226993	-	MM_0891	-	putative methyltransferase
892	 41.94	0	1053055..1053879	-	274	21226994	-	MM_0892	-	putative methyltransferase
893	 48.65	+1	1054360..1055025	+	221	21226995	-	MM_0893	-	cobalt transport protein CbiM
894	 46.08	0	1055022..1055327	+	101	21226996	-	MM_0894	-	cobalt transport protein CbiN
895	 43.97	0	1055481..1056185	-	234	21226997	-	MM_0895	-	endonuclease III
896	 43.71	0	1056333..1056650	-	105	21226998	-	MM_0896	-	hypothetical protein
897	 46.54	0	1056604..1057686	-	360	21226999	-	MM_0897	-	glutathione reductase
898	 48.11	0	1058082..1059698	+	538	21227000	-	MM_0898	-	IMP cyclohydrolase
899	 38.93	0	1060415..1061200	+	261	21227001	-	MM_0899	-	hypothetical protein
900	 40.93	0	1061540..1062460	-	306	21227002	ubiA	MM_0900	-	prenyltransferase
901	 46.51	0	1063538..1066375	+	945	21227003	-	MM_0901	-	cation-transporting ATPase
902	 44.64	0	1066415..1067254	-	279	21227004	-	MM_0902	-	putative methyltransferase
903	 43.95	0	1067609..1068211	-	200	21227005	-	MM_0903	-	transcriptional regulator
904	 46.04	0	1068439..1070004	+	521	21227006	-	MM_0904	-	phosphoglyceromutase
905	 46.50	0	1070316..1071272	+	318	21227007	-	MM_0905	-	hypothetical protein
906	 46.12	0	1071812..1072828	-	338	21227008	-	MM_0906	-	flap endonuclease-1
907	 41.91	0	1073436..1073738	-	100	21227009	-	MM_0907	-	hypothetical protein
908	 37.50	-1	1074707..1075042	-	111	21227010	-	MM_0908	-	hypothetical protein
909	 42.73	0	1075602..1076495	+	297	21227011	-	MM_0909	-	hypothetical protein
910	 43.95	0	1076614..1077414	+	266	21227012	-	MM_0910	-	potassium/copper-transporting ATPase
911	 45.11	0	1077662..1079275	+	537	21227013	-	MM_0911	-	ABC transporter, ATP-binding protein
912	 45.44	0	1079317..1080894	+	525	21227014	-	MM_0912	-	hypothetical protein
913	 45.05	0	1081063..1081506	+	147	21227015	-	MM_0913	-	hypothetical protein
914	 40.94	0	1081503..1082015	+	170	21227016	-	MM_0914	-	hypothetical protein
915	 48.88	+1	1082012..1083259	+	415	21227017	-	MM_0915	-	hypothetical protein
916	 46.33	0	1083267..1083866	+	199	21227018	-	MM_0916	-	hypothetical protein
917	 44.87	0	1083868..1084803	+	311	21227019	-	MM_0917	-	hypothetical protein
918	 39.96	0	1084945..1085442	+	165	21227020	-	MM_0918	-	4-carboxymuconolactone decarboxylase
919	 43.89	0	1085885..1086547	+	220	21227021	-	MM_0919	-	hypothetical protein
920	 46.35	0	1086581..1087018	-	145	21227022	-	MM_0920	-	MutT related protein
921	 47.46	0	1087157..1088890	+	577	21227023	-	MM_0921	-	aldehyde ferredoxin oxidoreductase
922	 42.89	0	1089329..1089715	+	128	21227024	-	MM_0922	-	translation initiation factor IF-5A
923	 47.26	0	1089822..1090697	+	291	21227025	-	MM_0923	-	agmatinase
924	 41.24	0	1090981..1091157	-	58	21227026	-	MM_0924	-	hypothetical protein
925	 41.67	0	1091374..1091553	-	59	21227027	-	MM_0925	-	hypothetical protein
926	 36.83	-1	1091936..1093564	-	542	21227028	-	MM_0926	-	transposase
927	 42.65	0	1093789..1093992	-	67	21227029	-	MM_0927	-	PbsX family transcriptional regulator
928	 47.92	0	1093994..1094377	-	127	21227030	-	MM_0928	-	hypothetical protein
929	 42.34	0	1095109..1097196	+	695	21227031	kefC	MM_0929	-	glutathione-regulated potassium-efflux system protein
930	 43.53	0	1097423..1097785	-	120	21227032	-	MM_0930	-	nitrogen regulatory protein P-II
931	 43.44	0	1097775..1098506	-	243	21227033	-	MM_0931	-	hypothetical protein
932	 45.31	0	1098503..1099195	-	230	21227034	-	MM_0932	-	hypothetical protein
933	 44.81	0	1099526..1101538	-	670	21227035	kefC	MM_0933	-	glutathione-regulated potassium-efflux system protein
934	 47.38	0	1102502..1103761	+	419	21227036	-	MM_0934	-	lysine 2,3-aminomutase
935	 42.52	0	1103966..1104781	+	271	21227037	-	MM_0935	-	Beta-lysine acetyltransferase
936	 39.48	0	1104803..1105420	-	205	21227038	-	MM_0936	-	hypothetical protein
937	 46.05	0	1105539..1107488	-	649	21227039	-	MM_0937	-	putative flagella related protein J
938	 43.40	0	1107501..1109198	-	565	21227040	-	MM_0938	-	putative flagella related protein FlaI
939	 44.21	0	1110367..1111083	-	238	21227041	-	MM_0939	-	putative flagella related protein H
940	 47.51	0	1112100..1113728	+	542	21227042	-	MM_0940	-	putative flavoprotein
941	 46.80	0	1115096..1116454	-	452	21227043	-	MM_0941	-	adenylosuccinate lyase
942	 35.98	-1	1116755..1117018	-	87	21227044	-	MM_0942	-	hypothetical protein
943	 48.25	0	1117122..1117865	+	247	21227045	-	MM_0943	-	geranylgeranylglyceryl phosphate synthase-like protein
944	 44.22	0	1118334..1120097	+	587	21227046	-	MM_0944	-	methyl coenzyme M reductase system, component A2
945	 43.70	0	1120251..1120925	-	224	21227047	-	MM_0945	-	iron-sulfur flavoprotein
946	 42.45	0	1121116..1121784	-	222	21227048	-	MM_0946	-	putative NADPH-flavin oxidoreductase
947	 44.69	0	1121914..1123119	-	401	21227049	-	MM_0947	-	hypothetical protein
948	 42.29	0	1123813..1125006	+	397	21227050	-	MM_0948	-	sensory transduction histidine kinase
949	 43.20	0	1125183..1126439	-	418	21227051	-	MM_0949	-	hypothetical protein
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.