IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
792	 44.31	0	945748..947277	-	509	21226894	-	MM_0792	-	hypothetical protein
793	 44.75	0	947430..947867	-	145	21226895	-	MM_0793	-	endonuclease III
794	 46.87	0	947883..948872	-	329	21226896	-	MM_0794	-	ADP-ribosylglycohydrolase
795	 35.61	-1	949121..949516	-	131	21226897	-	MM_0795	-	hypothetical protein
796	 36.69	-1	950198..950614	-	138	21226898	-	MM_0796	-	hypothetical protein
797	 36.32	-1	951126..951695	+	189	21226899	-	MM_0797	-	hypothetical protein
798	 51.37	+1	952052..953293	-	413	21226900	-	MM_0798	-	proteasome-activating nucleotidase
799	 41.06	0	954184..954429	+	81	21226901	-	MM_0799	-	hypothetical protein
800	 43.16	0	954552..954785	+	77	21226902	-	MM_0800	-	hypothetical protein
801	 48.07	0	954914..956053	+	379	21226903	-	MM_0801	-	adenylosuccinate synthetase
802	 50.00	+1	956480..956929	+	149	21226904	-	MM_0802	-	30S ribosomal protein S19e
803	 51.79	+1	957016..957378	+	120	21226905	-	MM_0803	-	hypothetical protein
804	 47.26	0	957384..957986	+	200	21226906	-	MM_0804	-	ATP-binding protein
805	 48.08	0	958253..958408	+	51	161485680	rpl39e	MM_0805	-	50S ribosomal protein L39e
806	 46.10	0	958415..958696	+	93	21226908	-	MM_0806	-	50S ribosomal protein L31e
807	 47.73	0	958725..959384	+	219	21226909	-	MM_0807	-	translation initiation factor IF-6
808	 40.86	0	959428..959613	+	61	21226910	rplX	MM_0808	-	50S ribosomal protein LX
809	 50.23	+1	959610..960047	+	145	21226911	-	MM_0809	-	prefoldin subunit alpha
810	 45.95	0	960228..961487	+	419	21226912	-	MM_0810	-	signal recognition particle subunit Ffh/SRP54
811	 43.89	0	961781..961960	-	59	21226913	-	MM_0811	-	stress-responsive transcriptional regulator
812	 45.37	0	962203..963249	-	348	21226914	-	MM_0812	-	hypothetical protein
813	 44.00	0	963330..964313	-	327	21226915	-	MM_0813	-	hypothetical protein
814	 44.09	0	964752..965411	+	219	21226916	-	MM_0814	-	peroxiredoxin
815	 40.45	0	965530..965838	+	102	21226917	-	MM_0815	-	transposase
816	 36.24	-1	965854..966987	+	377	21226918	-	MM_0816	-	transposase
817	 48.71	+1	967653..968465	-	270	21226919	-	MM_0817	-	pyrroline-5-carboxylate reductase
818	 45.68	0	968646..969803	-	385	21226920	-	MM_0818	-	gamma-glutamyl kinase
819	 45.76	0	969941..971284	-	447	21226921	-	MM_0819	-	gamma-glutamyl phosphate reductase
820	 41.48	0	972172..972576	+	134	21226922	-	MM_0820	-	hypothetical protein
821	 40.18	0	972683..973135	-	150	21226923	-	MM_0821	-	hypothetical protein
822	 43.43	0	973218..973544	-	108	21226924	-	MM_0822	-	hypothetical protein
823	 42.16	0	974188..975297	+	369	21226925	-	MM_0823	-	hypothetical protein
824	 46.41	0	975317..975775	+	152	21226926	-	MM_0824	-	universal stress protein
825	 48.71	+1	975846..976697	+	283	21226927	-	MM_0825	-	hypothetical protein
826	 44.69	0	976865..977551	+	228	21226928	-	MM_0826	-	hypothetical protein
827	 45.56	0	977671..978390	-	239	21226929	-	MM_0827	-	hypothetical protein
828	 45.53	0	979245..979613	-	122	21226930	-	MM_0828	-	hypothetical protein
829	 45.67	0	979617..979997	-	126	21226931	-	MM_0829	-	hypothetical protein
830	 49.96	+1	980136..981326	-	396	21226932	-	MM_0830	-	molybdopterin biosynthesis MoeA protein
831	 43.54	0	981348..981641	-	97	21226933	-	MM_0831	-	molybdopterin converting factor small subunit
832	 42.66	0	981722..983308	+	528	21226934	-	MM_0832	-	hypothetical protein
833	 42.21	0	983548..984144	+	198	21226935	-	MM_0833	-	hypothetical protein
834	 44.50	0	984394..985539	+	381	21226936	-	MM_0834	-	Na(+)/H(+) antiporter
835	 47.86	0	985716..988448	-	910	21226937	-	MM_0835	-	cation-transporting ATPase
836	 43.77	0	988734..990065	+	443	21226938	-	MM_0836	-	hypothetical protein
837	 45.56	0	990527..990796	+	89	21226939	-	MM_0837	-	hypothetical protein
838	 49.38	+1	990958..992397	-	479	21226940	-	MM_0838	-	succinate-semialdehyde dehydrogenase [NADP+]
839	 42.39	0	992939..995101	+	720	21226941	-	MM_0839	-	hypothetical protein
840	 46.19	0	995647..997101	+	484	21226942	-	MM_0840	-	putative glycosyltransferase
841	 44.54	0	997349..997714	+	121	21226943	-	MM_0841	-	ArsR family transcriptional regulator
842	 39.09	0	997812..998315	-	167	21226944	-	MM_0842	-	hypothetical protein
843	 47.02	0	998563..999921	-	452	21226945	-	MM_0843	-	coenzyme F390 synthetase/phenylacetyl-CoA ligase
844	 45.71	0	1000223..1000618	-	131	21226946	-	MM_0844	-	hypothetical protein
845	 46.36	0	1000637..1000966	-	109	21226947	-	MM_0845	-	hypothetical protein
846	 43.89	0	1001005..1001601	-	198	21226948	-	MM_0846	-	hypothetical protein
847	 49.09	+1	1001829..1002158	-	109	21226949	-	MM_0847	-	hypothetical protein
848	 46.14	0	1002315..1003376	+	353	21226950	-	MM_0848	-	hypothetical protein
849	 41.41	0	1003540..1004022	+	160	21226951	-	MM_0849	-	bacterioferritin comigratory protein
850	 44.44	0	1004285..1004518	-	77	21226952	-	MM_0850	-	hypothetical protein
851	 32.24	-2	1004835..1005200	-	121	21226953	-	MM_0851	-	hypothetical protein
852	 44.73	0	1005507..1006901	-	464	21226954	-	MM_0852	-	deoxyribodipyrimidine photolyase
853	 47.50	0	1007115..1007855	-	246	21226955	-	MM_0853	-	hypothetical protein
854	 45.38	0	1007852..1009138	-	428	21226956	cdc48	MM_0854	-	cell division cycle protein 48-like protein
855	 44.82	0	1009614..1010327	+	237	21226957	-	MM_0855	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
856	 48.00	0	1010574..1011800	-	408	21226958	-	MM_0856	-	hypothetical protein
857	 44.26	0	1011797..1012162	-	121	21226959	-	MM_0857	-	hypothetical protein
858	 42.39	0	1012361..1012669	-	102	21226960	-	MM_0858	-	translation initiation factor Sui1
859	 40.83	0	1013221..1013460	+	79	21226961	-	MM_0859	-	hypothetical protein
860	 49.67	+1	1014013..1016007	+	664	21226962	-	MM_0860	-	phosphoribosylformylglycinamidine synthase II
861	 46.97	0	1016498..1017634	+	378	21226963	-	MM_0861	-	Alpha-amylase
862	 45.28	0	1017631..1018827	+	398	21226964	-	MM_0862	-	Alpha-amylase
863	 43.99	0	1018878..1019684	+	268	21226965	-	MM_0863	-	hypothetical protein
864	 45.42	0	1019681..1021657	+	658	21226966	-	MM_0864	-	glucoamylase
865	 45.07	0	1021868..1023136	-	422	21226967	-	MM_0865	-	seryl-tRNA synthetase
866	 44.85	0	1023258..1024490	-	410	21226968	-	MM_0866	-	periplasmic serine protease
867	 48.84	+1	1024811..1026958	+	715	161485679	metG	MM_0867	-	methionyl-tRNA synthetase
868	 44.63	0	1027183..1027713	-	176	21226970	-	MM_0868	-	adenylate cyclase
869	 50.38	+1	1027827..1028225	-	132	21226971	-	MM_0869	-	hypothetical protein
870	 50.72	+1	1028232..1029404	-	390	21226972	-	MM_0870	-	acetyl-CoA acetyltransferase
871	 50.38	+1	1029422..1030471	-	349	21226973	-	MM_0871	-	hypothetical protein
872	 47.37	0	1030512..1031252	-	246	21226974	-	MM_0872	-	putative transcriptional regulator
873	 45.74	0	1031391..1032212	+	273	21226975	-	MM_0873	-	hypothetical protein
874	 33.07	-2	1032667..1033419	+	250	21226976	-	MM_0874	-	hypothetical protein
875	 38.40	-1	1033935..1034171	+	78	21226977	-	MM_0875	-	hypothetical protein
876	 37.80	-1	1035461..1036198	+	245	21226978	-	MM_0876	-	hypothetical protein
877	 35.14	-1	1036566..1036898	+	110	21226979	-	MM_0877	-	transposase
878	 32.00	-2	1036843..1036992	+	49	21226980	-	MM_0878	-	transposase
879	 32.38	-2	1037063..1037272	+	69	21226981	-	MM_0879	-	hypothetical protein
880	 42.44	0	1038618..1039397	+	259	21226982	-	MM_0880	-	hypothetical protein
881	 32.49	-2	1039984..1041288	-	434	21226983	-	MM_0881	-	transposase
882	 42.12	0	1041468..1042400	+	310	21226984	-	MM_0882	-	hypothetical protein
883	 49.61	+1	1042702..1044606	+	634	21226985	-	MM_0883	-	hypothetical protein
884	 45.10	0	1044767..1045021	-	84	21226986	-	MM_0884	-	hypothetical protein
885	 29.91	-2	1045229..1045462	-	77	21226987	-	MM_0885	-	hypothetical protein
886	 46.63	0	1045583..1046680	-	365	21226988	-	MM_0886	-	DNA polymerase IV
887	 48.78	+1	1046973..1047956	+	327	21226989	cbiO	MM_0887	-	cobalt transporter, ATP-binding protein
888	 46.84	0	1048009..1048815	+	268	21226990	cbiQ	MM_0888	-	cobalt transport protein
889	 40.34	0	1048887..1050470	-	527	21226991	-	MM_0889	-	hypothetical protein
890	 43.57	0	1050955..1051872	-	305	21226992	-	MM_0890	-	putative methyltransferase
891	 42.29	0	1051865..1052746	-	293	21226993	-	MM_0891	-	putative methyltransferase
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.