IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
493	 47.54	0	615024..615776	-	250	21226595	-	MM_0493	-	Acetyl-CoA synthetase, beta subunit
494	 47.69	0	615943..616158	-	71	21226596	-	MM_0494	-	hypothetical protein
495	 46.35	0	616158..617402	-	414	21226597	-	MM_0495	-	acetate kinase
496	 47.01	0	617488..618489	-	333	21226598	-	MM_0496	-	phosphate acetyltransferase
497	 45.25	0	618824..619402	+	192	21226599	-	MM_0497	-	iron-sulfur flavoprotein
498	 50.23	+1	619683..621452	+	589	21226600	-	MM_0498	-	putative chloride channel protein
499	 38.70	0	621816..622169	+	117	21226601	-	MM_0499	-	hypothetical protein
500	 42.50	0	622615..623127	+	170	21226602	-	MM_0500	-	hypothetical protein
501	 43.46	0	623181..623654	+	157	21226603	-	MM_0501	-	3-demethylubiquinone-9 3-methyltransferase
502	 46.90	0	623772..624191	+	139	21226604	-	MM_0502	-	translation initiation inhibitor
503	 43.17	0	624322..625134	+	270	21226605	-	MM_0503	-	hypothetical protein
504	 45.26	0	625546..628974	+	1142	21226606	-	MM_0504	-	phycocyanin alpha-subunit phycocyanobilin lyase
505	 47.78	0	629118..630155	+	345	21226607	-	MM_0505	-	methylcobalamin:coenzyme M methyltransferase
506	 48.63	+1	630204..630569	-	121	21226608	-	MM_0506	-	hypothetical protein
507	 45.27	0	630618..631145	-	175	21226609	-	MM_0507	-	hypothetical protein
508	 48.05	0	631617..632309	-	230	21226610	-	MM_0508	-	isoleucyl-tRNA synthetase
509	 37.08	-1	632887..634515	-	542	21226611	-	MM_0509	-	transposase
510	 45.69	0	634643..635710	-	355	21226612	hflX	MM_0510	-	GTP-binding protein
511	 46.21	0	635932..636327	-	131	21226613	-	MM_0511	-	hypothetical protein
512	 47.55	0	636450..637511	-	353	21226614	-	MM_0512	-	tRNA splicing endonuclease
513	 50.90	+1	637715..639211	-	498	21226615	-	MM_0513	-	cobyrinic acid a,c-diamide synthase
514	 48.87	+1	639362..640159	-	265	21226616	nifH2	MM_0514	-	nitrogenase iron protein 2
515	 48.07	0	640248..641360	-	370	21226617	-	MM_0515	-	hypothetical protein
516	 49.38	+1	641771..643222	-	483	21226618	-	MM_0516	-	hypothetical protein
517	 49.62	+1	643249..643641	-	130	21226619	-	MM_0517	-	sirohydrochlorin cobaltochelatase
518	 39.36	0	644144..646849	-	901	21226620	-	MM_0518	-	sensory transduction histidine kinase
519	 47.58	0	647462..648451	-	329	21226621	-	MM_0519	-	hypothetical protein
520	 36.55	-1	648444..650030	-	528	21226622	-	MM_0520	-	hypothetical protein
521	 34.17	-1	649989..650228	+	79	21226623	-	MM_0521	-	hypothetical protein
522	 35.42	-1	650298..651542	+	414	21226624	-	MM_0522	-	transposase
523	 39.37	0	651555..651902	-	115	21226625	-	MM_0523	-	hypothetical protein
524	 49.27	+1	651915..653207	-	430	21226626	-	MM_0524	-	hypothetical protein
525	 44.79	0	653365..653844	-	159	21226627	-	MM_0525	-	hypothetical protein
526	 44.44	0	653926..654420	-	164	21226628	-	MM_0526	-	hypothetical protein
527	 41.52	0	654671..655501	-	276	21226629	-	MM_0527	-	hypothetical protein
528	 41.18	0	655835..656089	-	84	21226630	-	MM_0528	-	hypothetical protein
529	 48.09	0	656505..657317	-	270	21226631	-	MM_0529	-	hydrolase
530	 45.84	0	657372..659609	-	745	21226632	-	MM_0530	-	amino acid permease
531	 33.61	-2	660579..660938	-	119	21226633	-	MM_0531	-	hypothetical protein
532	 45.47	0	662139..662624	-	161	21226634	-	MM_0532	-	hypothetical protein
533	 35.03	-1	663360..663713	-	117	21226635	-	MM_0533	-	hypothetical protein
534	 42.18	0	664115..665290	-	391	21226636	-	MM_0534	-	hypothetical protein
535	 37.85	-1	665572..665859	-	95	21226637	-	MM_0535	-	hypothetical protein
536	 42.88	0	666425..667063	-	212	21226638	-	MM_0536	-	hypothetical protein
537	 46.32	0	667417..667824	+	135	21226639	-	MM_0537	-	hypothetical protein
538	 31.30	-2	668394..668639	+	81	21226640	-	MM_0538	-	hypothetical protein
539	 29.31	-2	668642..668815	+	57	21226641	-	MM_0539	-	hypothetical protein
540	 41.20	0	668796..669647	-	283	21226642	-	MM_0540	-	hypothetical protein
541	 46.49	0	670076..670417	-	113	21226643	-	MM_0541	-	hypothetical protein
542	 63.11	+2	670830..671420	+	196	21226644	-	MM_0542	-	hypothetical protein
543	 41.41	0	671844..672041	-	65	21226645	-	MM_0543	-	hypothetical protein
544	 50.66	+1	672401..674218	+	605	21226646	-	MM_0544	-	exoribonuclease II
545	 35.13	-1	674599..674877	+	92	21226647	-	MM_0545	-	hypothetical protein
546	 35.04	-1	674890..675240	+	116	21226648	-	MM_0546	-	hypothetical protein
547	 49.65	+1	675845..676567	+	240	21226649	-	MM_0547	-	hypothetical protein
548	 36.89	-1	676642..676866	+	74	21226650	-	MM_0548	-	hypothetical protein
549	 29.88	-2	676921..677325	-	134	21226651	-	MM_0549	-	hypothetical protein
550	 32.94	-2	677312..677563	-	83	21226652	-	MM_0550	-	hypothetical protein
551	 37.78	-1	678340..678564	-	74	21226653	-	MM_0551	-	hypothetical protein
552	 35.34	-1	678610..678858	-	82	21226654	-	MM_0552	-	hypothetical protein
553	 41.16	0	679897..680190	+	97	21226655	-	MM_0553	-	hypothetical protein
554	 38.82	0	680167..680421	-	84	21226656	-	MM_0554	-	hypothetical protein
555	 37.50	-1	680804..681043	+	79	21226657	-	MM_0555	-	hypothetical protein
556	 37.25	-1	682111..682161	+	16	21226658	-	MM_0556	-	hypothetical protein
557	 35.67	-1	682642..683241	-	199	21226659	-	MM_0557	-	hypothetical protein
558	 38.14	-1	683334..683624	-	96	21226660	-	MM_0558	-	hypothetical protein
559	 41.67	0	683642..684613	-	323	21226661	-	MM_0559	-	hypothetical protein
560	 34.25	-1	684626..685276	-	216	21226662	-	MM_0560	-	hypothetical protein
561	 31.57	-2	685292..687724	-	810	21226663	-	MM_0561	-	hypothetical protein
562	 35.19	-1	687681..688379	-	232	21226664	-	MM_0562	-	hypothetical protein
563	 37.79	-1	688397..689272	-	291	21226665	-	MM_0563	-	hypothetical protein
564	 33.09	-2	689273..690925	-	550	21226666	-	MM_0564	-	hypothetical protein
565	 42.95	0	691202..691804	+	200	21226667	-	MM_0565	-	transcriptional regulator
566	 47.22	0	692531..693250	-	239	21226668	-	MM_0566	-	hypothetical protein
567	 42.60	0	693485..693991	+	168	21226669	-	MM_0567	-	acetyltransferase
568	 41.18	0	694244..694600	-	118	21226670	-	MM_0568	-	hypothetical protein
569	 48.52	0	695188..695424	+	78	21226671	-	MM_0569	-	ABC transporter, ATP-binding protein
570	 44.08	0	695634..696452	-	272	21226672	-	MM_0570	-	ABC transporter, ATP-binding protein
571	 41.06	0	696789..697577	-	262	21226673	-	MM_0571	-	transcriptional regulator, Icc related protein
572	 44.18	0	697918..699669	-	583	21226674	-	MM_0572	-	alkaline phosphatase
573	 34.93	-1	700164..700664	+	166	21226675	-	MM_0573	-	hypothetical protein
574	 46.14	0	700824..701276	+	150	21226676	-	MM_0574	-	arsenate reductase
575	 41.39	0	702088..703080	-	330	21226677	-	MM_0575	-	putative phosphate regulatory protein
576	 41.06	0	703310..703969	-	219	21226678	phoU	MM_0576	-	phosphate transporter PhoU
577	 43.45	0	703966..704400	-	144	21226679	pstB	MM_0577	-	phosphate ABC transporter ATP-binding protein
578	 46.94	0	704446..705393	-	315	21226680	pstS	MM_0578	-	phosphate-binding protein
579	 41.99	0	706210..707283	-	357	21226681	-	MM_0579	-	transposase
580	 38.84	0	707646..708299	-	217	21226682	-	MM_0580	-	hypothetical protein
581	 43.94	0	708693..709691	-	332	21226683	-	MM_0581	-	hypothetical protein
582	 44.56	0	710372..711502	+	376	21226684	-	MM_0582	-	glycosyltransferase
583	 44.15	0	711909..712703	+	264	21226685	-	MM_0583	-	hypothetical protein
584	 46.10	0	712965..713771	+	268	21226686	-	MM_0584	-	hypothetical protein
585	 48.30	0	714201..716024	+	607	21226687	-	MM_0585	-	hypothetical protein
586	 45.02	0	716166..717158	+	330	21226688	-	MM_0586	-	Sulfate adenylyltransferase
587	 47.37	0	717511..718764	+	417	21226689	-	MM_0587	-	hypothetical protein
588	 46.07	0	718915..719550	-	211	21226690	-	MM_0588	-	hypothetical protein
589	 45.78	0	719622..720071	-	149	21226691	-	MM_0589	-	hypothetical protein
590	 51.17	+1	720368..721438	-	356	21226692	egsA	MM_0590	-	NAD(P)-dependent glycerol-1-phosphate dehydrogenase
591	 44.64	0	722397..723254	+	285	21226693	-	MM_0591	-	hypothetical protein
592	 46.29	0	723321..724061	+	246	21226694	-	MM_0592	-	integral membrane protein
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.