IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
365	 39.39	0	471016..471477	+	153	21226467	-	MM_0365	-	hypothetical protein
366	 47.43	0	471552..471920	+	122	21226468	-	MM_0366	-	ferredoxin
367	 42.16	0	472177..472731	-	184	21226469	-	MM_0367	-	hypothetical protein
368	 45.60	0	472947..473264	+	105	21226470	-	MM_0368	-	hypothetical protein
369	 45.08	0	473430..474272	+	280	21226471	-	MM_0369	-	hypothetical protein
370	 44.51	0	474376..475440	+	354	21226472	-	MM_0370	-	chorismate mutase
371	 38.63	0	475505..476392	+	295	21226473	-	MM_0371	-	hypothetical protein
372	 46.77	0	476651..477625	+	324	21226474	-	MM_0372	-	MoxR-like ATPase
373	 46.15	0	477794..478675	+	293	21226475	-	MM_0373	-	putative cytoplasmic protein
374	 47.23	0	478678..480555	+	625	21226476	-	MM_0374	-	hypothetical protein
375	 47.47	0	480552..483041	+	829	21226477	-	MM_0375	-	hypothetical protein
376	 42.04	0	483168..483764	-	198	21226478	-	MM_0376	-	hypothetical protein
377	 44.92	0	483864..484916	-	350	21226479	-	MM_0377	-	integral membrane protein
378	 45.89	0	485270..486448	-	392	21226480	-	MM_0378	-	sugar-phosphate nucleotydyl transferase
379	 45.10	0	486587..486943	-	118	21226481	-	MM_0379	-	hypothetical protein
380	 45.34	0	487168..487650	-	160	21226482	-	MM_0380	-	peptidyl-prolyl cis-trans isomerase
381	 46.91	0	487779..488279	-	166	21226483	-	MM_0381	-	peptidyl-prolyl cis-trans isomerase
382	 44.72	0	488339..488830	-	163	21226484	-	MM_0382	-	peptidyl-prolyl cis-trans isomerase
383	 41.59	0	489007..489648	-	213	21226485	-	MM_0383	-	hypothetical protein
384	 42.50	0	490071..492449	+	792	21226486	-	MM_0384	-	hypothetical protein
385	 44.93	0	493828..494241	-	137	21226487	-	MM_0385	-	hypothetical protein
386	 44.03	0	495242..495643	-	133	21226488	-	MM_0386	-	hypothetical protein
387	 47.60	0	496300..498717	+	805	21226489	-	MM_0387	-	heterodisulfide reductase subunit HdrA
388	 47.82	0	498714..499424	+	236	21226490	-	MM_0388	-	heterodisulfide reductase subunit HdrC
389	 47.20	0	499378..500322	+	314	21226491	-	MM_0389	-	heterodisulfide reductase subunit HdrB
390	 41.31	0	500539..501816	-	425	21226492	-	MM_0390	-	putative surface layer protein
391	 40.11	0	501994..504279	-	761	21226493	-	MM_0391	-	hypothetical protein
392	 48.41	0	504926..505177	+	83	21226494	-	MM_0392	-	hypothetical protein
393	 33.52	-2	505702..506238	-	178	21226495	-	MM_0393	-	hypothetical protein
394	 37.98	-1	506266..507105	-	279	21226496	-	MM_0394	-	hypothetical protein
395	 39.92	0	507430..508689	-	419	21226497	-	MM_0395	-	putative surface layer protein
396	 36.60	-1	508772..509905	-	377	21226498	-	MM_0396	-	transposase
397	 40.70	0	509921..510205	-	94	21226499	-	MM_0397	-	transposase
398	 39.43	0	510615..511763	-	382	21226500	-	MM_0398	-	hypothetical protein
399	 48.51	0	512355..512657	+	100	21226501	-	MM_0399	-	hypothetical protein
400	 36.82	-1	512752..513153	-	133	21226502	-	MM_0400	-	hypothetical protein
401	 31.84	-2	513577..514113	-	178	21226503	-	MM_0401	-	hypothetical protein
402	 36.81	-1	514140..515348	-	402	21226504	-	MM_0402	-	hypothetical protein
403	 47.52	0	515777..516079	+	100	21226505	-	MM_0403	-	hypothetical protein
404	 37.09	-1	516076..516288	-	70	21226506	-	MM_0404	-	hypothetical protein
405	 41.77	0	516267..517700	-	477	21226507	-	MM_0405	-	putative surface layer protein
406	 37.50	-1	517884..519059	-	391	21226508	-	MM_0406	-	hypothetical protein
407	 48.51	0	519541..519843	+	100	21226509	-	MM_0407	-	hypothetical protein
408	 46.43	0	519959..520378	-	139	21226510	-	MM_0408	-	hypothetical protein
409	 50.00	+1	520855..522030	+	391	21226511	-	MM_0409	-	3-isopropylmalate dehydratase
410	 40.10	0	522390..522581	+	63	21226512	-	MM_0410	-	hypothetical protein
411	 38.95	0	522693..523706	-	337	21226513	-	MM_0411	-	hypothetical protein
412	 44.70	0	523918..525465	-	515	21226514	-	MM_0412	-	flagellar assembly protein J
413	 44.05	0	525477..527324	-	615	21226515	-	MM_0413	-	flagella related protein FlaI
414	 44.15	0	527388..528182	-	264	21226516	-	MM_0414	-	flagellar accessory protein FlaH
415	 44.06	0	528444..528965	-	173	21226517	-	MM_0415	-	hypothetical protein
416	 46.34	0	528981..529472	-	163	21226518	-	MM_0416	-	hypothetical protein
417	 43.51	0	529797..530582	-	261	21226519	-	MM_0417	-	hypothetical protein
418	 43.82	0	530648..531238	-	196	21226520	-	MM_0418	-	Flagillin B1
419	 49.18	+1	531692..532543	-	283	21226521	-	MM_0419	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
420	 46.72	0	532530..534269	-	579	21226522	-	MM_0420	-	pyruvate synthase subunit alpha
421	 35.09	-1	535416..536555	-	379	21226523	-	MM_0421	-	transposase
422	 32.85	-2	536556..536969	+	137	21226524	-	MM_0422	-	transposase
423	 41.49	0	537162..537590	-	142	21226525	-	MM_0423	-	hypothetical protein
424	 47.24	0	537677..538978	-	433	21226526	hisD	MM_0424	-	histidinol dehydrogenase
425	 48.52	0	539592..541784	-	730	21226527	-	MM_0425	-	ski2-like helicase
426	 48.78	+1	541958..543724	-	588	21226528	-	MM_0426	-	putative ATPase RIL
427	 40.18	0	544069..544506	-	145	21226529	-	MM_0427	-	hypothetical protein
428	 48.73	+1	544639..545658	-	339	21226530	-	MM_0428	-	hypothetical protein
429	 46.27	0	546056..547786	+	576	21226531	-	MM_0429	-	type I restriction-modification system methylation subunit
430	 38.71	0	547779..549098	+	439	21226532	-	MM_0430	-	type I restriction-modification system specificity subunit
431	 46.63	0	549109..552267	+	1052	21226533	-	MM_0431	-	type I restriction-modification system restriction subnit
432	 38.86	0	552346..552924	+	192	21226534	-	MM_0432	-	transcriptional regulator
433	 37.22	-1	553033..553830	+	265	21226535	-	MM_0433	-	hypothetical protein
434	 38.00	-1	553883..554761	+	292	21226536	-	MM_0434	-	hypothetical protein
435	 40.44	0	554902..555309	-	135	21226537	-	MM_0435	-	hypothetical protein
436	 46.07	0	556054..556320	-	88	21226538	-	MM_0436	-	thioredoxin
437	 48.71	+1	556588..557400	-	270	21226539	-	MM_0437	-	hypothetical protein
438	 45.39	0	557737..558615	-	292	21226540	-	MM_0438	-	methylenetetrahydrofolate reductase
439	 46.99	0	558807..559421	-	204	21226541	-	MM_0439	-	zinc-finger protein
440	 47.90	0	559424..560659	-	411	21226542	-	MM_0440	-	dihydropteroate synthase
441	 47.69	0	561382..562245	-	287	21226543	-	MM_0441	-	methenyltetrahydrofolate cyclohydrolase
442	 48.49	0	562270..563529	-	419	21226544	-	MM_0442	-	Serine hydroxymethyltransferase
443	 47.78	0	564066..564674	-	202	21226545	-	MM_0443	-	phosphoribosylglycinamide formyltransferase
444	 46.44	0	564812..565795	-	327	21226546	-	MM_0444	-	hypothetical protein
445	 48.44	0	565888..567237	+	449	21226547	-	MM_0445	-	hypothetical protein
446	 51.36	+1	567493..568263	-	256	21226548	nadE	MM_0446	-	NAD synthetase
447	 49.64	+1	568898..571276	+	792	21226549	-	MM_0447	-	cell division control protein
448	 42.35	0	571422..571676	+	84	21226550	-	MM_0448	-	hypothetical protein
449	 39.38	0	572153..572863	+	236	21226551	-	MM_0449	-	SAM-dependent methyltransferase
450	 36.00	-1	572998..573522	+	174	21226552	-	MM_0450	-	hypothetical protein
451	 43.02	0	574006..574356	+	116	21226553	-	MM_0451	-	hypothetical protein
452	 27.18	-2	574548..574937	-	129	21226554	-	MM_0452	-	hypothetical protein
453	 42.31	0	575694..575927	+	77	21226555	-	MM_0453	-	hypothetical protein
454	 34.86	-1	576082..576606	-	174	21226556	-	MM_0454	-	hypothetical protein
455	 44.39	0	576755..577423	+	222	21226557	-	MM_0455	-	hypothetical protein
456	 46.84	0	577527..578207	-	226	21226558	-	MM_0456	-	phosphoglycolate phosphatase
457	 49.00	+1	578452..579555	-	367	21226559	radA	MM_0457	-	DNA repair and recombination protein RadA
458	 44.52	0	579716..580180	+	154	21226560	-	MM_0458	-	phosphopantetheine adenylyltransferase
459	 45.95	0	580321..580653	+	110	21226561	-	MM_0459	-	hypothetical protein
460	 47.12	0	580792..581625	+	277	21226562	-	MM_0460	-	putative endonuclease IV
461	 41.86	0	581768..582811	-	347	21226563	-	MM_0461	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
462	 48.27	0	582941..584353	-	470	21226564	cbiO	MM_0462	-	cobalt transport ATP-binding protein
463	 47.89	0	584313..585095	-	260	21226565	cbiQ	MM_0463	-	cobalt transport protein
464	 44.44	0	585209..585550	-	113	21226566	cbiN	MM_0464	-	cobalt transport protein CbiN
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.