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IslandPath Analysis: Methanosarcina mazei Go1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98

Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3164	 45.52	0	3845853..3846722	+	289	21229266	-	MM_3164	-	hypothetical protein
3165	 30.74	-2	3848698..3848967	+	89	21229267	-	MM_3165	-	hypothetical protein
3166	 38.54	-1	3848998..3849381	-	127	21229268	-	MM_3166	-	hypothetical protein
3167	 33.68	-1	3849993..3851423	+	476	21229269	-	MM_3167	-	transposase
3168	 36.12	-1	3852072..3853325	-	417	21229270	-	MM_3168	-	hypothetical protein
3169	 41.45	0	3853443..3853910	-	155	21229271	-	MM_3169	-	hypothetical protein
3170	 44.33	0	3854377..3855231	+	284	21229272	-	MM_3170	-	MerR family transcriptional regulator
3171	 40.02	0	3856425..3857711	+	428	21229273	-	MM_3171	-	hypothetical protein
3172	 43.47	0	3857919..3858776	-	285	21229274	-	MM_3172	-	putative methyltransferase
3173	 40.26	0	3859019..3859321	-	100	21229275	-	MM_3173	-	ArsR family transcriptional regulator
3174	 37.96	-1	3859412..3859627	-	71	21229276	-	MM_3174	-	hypothetical protein
3175	 50.44	+1	3859860..3860315	-	151	21229277	-	MM_3175	-	hypothetical protein
3176	 46.81	0	3860487..3861161	-	224	21229278	-	MM_3176	-	hypothetical protein
3177	 43.10	0	3861352..3862170	+	272	21229279	-	MM_3177	-	hypothetical protein
3178	 41.42	0	3862247..3863965	-	572	21229280	-	MM_3178	-	hypothetical protein
3179	 43.14	0	3864590..3865150	+	186	21229281	-	MM_3179	-	transcriptional regulator
3180	 47.24	0	3865303..3866985	+	560	21229282	-	MM_3180	-	putative acetyl-CoA synthetase
3181	 49.40	+1	3867269..3867517	+	82	21229283	vorC	MM_3181	-	ketoisovalerate oxidoreductase subunit
3182	 49.62	+1	3867537..3868592	+	351	21229284	vorB	MM_3182	-	2-ketoisovalerate ferredoxin reductase
3183	 50.97	+1	3868595..3870040	+	481	21229285	vorA	MM_3183	-	ketoisovalerate oxidoreductase subunit
3184	 35.29	-1	3871448..3871702	-	84	21229286	-	MM_3184	-	hypothetical protein
3185	 42.97	0	3871918..3873090	-	390	21229287	-	MM_3185	-	ornithine decarboxylase
3186	 47.23	0	3873800..3875080	-	426	21229288	-	MM_3186	-	transporter
3187	 46.78	0	3875376..3876572	-	398	21229289	-	MM_3187	-	flavodoxin
3188	 49.24	+1	3876957..3878477	+	506	21229290	-	MM_3188	-	glutamine synthetase
3189	 46.67	0	3878825..3879664	+	279	21229291	-	MM_3189	-	potassium channel protein
3190	 46.31	0	3879791..3880684	+	297	21229292	-	MM_3190	-	hypothetical protein
3191	 51.20	+1	3880799..3881173	+	124	21229293	-	MM_3191	-	hypothetical protein
3192	 47.28	0	3881333..3881755	+	140	21229294	-	MM_3192	-	hypothetical protein
3193	 44.13	0	3881926..3882138	-	70	21229295	-	MM_3193	-	hypothetical protein
3194	 46.77	0	3882272..3883693	-	473	21229296	-	MM_3194	-	DinF protein
3195	 44.66	0	3883718..3884185	-	155	21229297	-	MM_3195	-	MarR family transcriptional regulator
3196	 40.70	0	3884867..3885151	+	94	21229298	-	MM_3196	-	hypothetical protein
3197	 40.88	0	3885353..3885763	+	136	21229299	-	MM_3197	-	hypothetical protein
3198	 47.89	0	3885997..3887391	-	464	21229300	-	MM_3198	-	hypothetical protein
3199	 45.30	0	3887532..3888467	+	311	21229301	-	MM_3199	-	transporter
3200	 24.64	-2	3888696..3888902	-	68	21229302	-	MM_3200	-	hypothetical protein
3201	 46.67	0	3889085..3889804	+	239	21229303	-	MM_3201	-	hypothetical protein
3202	 44.48	0	3889811..3892393	-	860	21229304	-	MM_3202	-	hypothetical protein
3203	 44.71	0	3892730..3894610	-	626	21229305	-	MM_3203	-	hypothetical protein
3204	 45.11	0	3895423..3896916	-	497	21229306	-	MM_3204	-	hypothetical protein
3205	 42.81	0	3897854..3900532	-	892	21229307	-	MM_3205	-	two component system histidine kinase
3206	 38.48	-1	3900582..3900950	-	122	21229308	-	MM_3206	-	response regulator receiver domain-containing protein
3207	 46.20	0	3901838..3904456	+	872	21229309	-	MM_3207	-	protease
3208	 26.96	-2	3904763..3905170	+	135	21229310	-	MM_3208	-	ArsR family transcriptional regulator
3209	 46.04	0	3905363..3906283	+	306	21229311	-	MM_3209	-	transporter
3210	 39.26	0	3906673..3906807	+	44	21229312	-	MM_3210	-	cation efflux protein
3211	 41.89	0	3906804..3907259	+	151	21229313	-	MM_3211	-	cation efflux protein
3212	 49.78	+1	3907900..3909480	-	526	21229314	-	MM_3212	-	phosphoenolpyruvate carboxylase
3213	 48.00	0	3910046..3911668	+	540	21229315	-	MM_3213	-	hydroxylamine reductase
3214	 38.75	0	3911819..3912667	-	282	21229316	-	MM_3214	-	ferredoxin
3215	 39.29	0	3913518..3913853	+	111	21229317	-	MM_3215	-	hypothetical protein
3216	 40.92	0	3914173..3915108	-	311	21229318	-	MM_3216	-	hypothetical protein
3217	 35.78	-1	3915953..3916279	-	108	21229319	-	MM_3217	-	hypothetical protein
3218	 44.35	0	3916538..3916900	-	120	21229320	-	MM_3218	-	hypothetical protein
3219	 37.40	-1	3917201..3918109	-	302	21229321	-	MM_3219	-	hypothetical protein
3220	 39.76	0	3918314..3919759	+	481	21229322	-	MM_3220	-	transporter
3221	 41.69	0	3919968..3921104	+	378	21229323	-	MM_3221	-	hypothetical protein
3222	 40.50	0	3921242..3921604	-	120	21229324	-	MM_3222	-	hypothetical protein
3223	 48.40	0	3922057..3922839	+	260	21229325	-	MM_3223	-	ABC transporter, ATP-binding protein
3224	 47.19	0	3922842..3923678	+	278	21229326	-	MM_3224	-	ABC transporter, permease protein
3225	 43.46	0	3923854..3924564	+	236	21229327	-	MM_3225	-	putative ketoreductase
3226	 48.08	0	3924699..3925166	+	155	21229328	-	MM_3226	-	hypothetical protein
3227	 49.78	+1	3925148..3925372	+	74	21229329	-	MM_3227	-	hypothetical protein
3228	 38.62	0	3925407..3926030	-	207	21229330	-	MM_3228	-	transposase
3229	 37.37	-1	3926044..3926538	-	164	21229331	-	MM_3229	-	transposase
3230	 47.86	0	3927396..3928421	+	341	21229332	-	MM_3230	-	phosphate permease
3231	 47.97	0	3928421..3929110	+	229	21229333	-	MM_3231	-	hypothetical protein
3232	 36.29	-1	3929413..3929649	+	78	21229334	-	MM_3232	-	hypothetical protein
3233	 34.71	-1	3929972..3930262	-	96	21229335	-	MM_3233	-	HTH DNA-binding protein
3234	 45.80	0	3930505..3931290	+	261	21229336	-	MM_3234	-	hydroxyethylthiazole kinase
3235	 43.71	0	3931531..3932253	+	240	21229337	-	MM_3235	-	thiamin-phosphate pyrophosphorylase
3236	 35.11	-1	3932525..3933031	+	168	21229338	-	MM_3236	-	transposase
3237	 30.74	-2	3932997..3933536	+	179	21229339	-	MM_3237	-	transposase
3238	 42.50	0	3933749..3934315	+	188	21229340	-	MM_3238	-	hypothetical protein
3239	 42.98	0	3934903..3935265	+	120	21229341	-	MM_3239	-	hypothetical protein
3240	 47.96	0	3935262..3936635	+	457	21229342	syrB	MM_3240	-	putative transcriptional regulator
3241	 41.98	0	3937034..3937600	+	188	21229343	-	MM_3241	-	hypothetical protein
3242	 33.53	-2	3937845..3938360	+	171	21229344	-	MM_3242	-	hypothetical protein
3243	 50.56	+1	3938456..3939343	-	295	21229345	-	MM_3243	-	hypothetical protein
3244	 32.80	-2	3939697..3942306	-	869	21229346	-	MM_3244	-	hypothetical protein
3245	 36.95	-1	3944678..3945811	-	377	21229347	-	MM_3245	-	transposase
3246	 40.00	0	3945827..3946111	-	94	21229348	-	MM_3246	-	transposase
3247	 35.86	-1	3946879..3947868	-	329	21229349	-	MM_3247	-	hypothetical protein
3248	 32.30	-2	3948087..3948764	-	225	21229350	-	MM_3248	-	hypothetical protein
3249	 37.27	-1	3949057..3950274	-	405	21229351	-	MM_3249	-	hypothetical protein
3250	 32.30	-2	3950271..3951239	-	322	21229352	-	MM_3250	-	hypothetical protein
3251	 39.28	0	3951396..3952034	+	212	21229353	-	MM_3251	-	hypothetical protein
3252	 36.34	-1	3952047..3952379	+	110	21229354	-	MM_3252	-	hypothetical protein
3253	 37.52	-1	3952345..3955044	+	899	21229355	-	MM_3253	-	hypothetical protein
3254	 31.32	-2	3955121..3956464	+	447	21229356	-	MM_3254	-	hypothetical protein
3255	 36.84	-1	3957188..3957529	+	113	21229357	-	MM_3255	-	hypothetical protein
3256	 47.50	0	3958282..3959502	+	406	21229358	-	MM_3256	-	hypothetical protein
3257	 44.24	0	3959693..3960178	-	161	21229359	-	MM_3257	-	hypothetical protein
3258	 40.40	0	3960550..3961596	+	348	21229360	-	MM_3258	-	hypothetical protein
3259	 41.32	0	3961597..3962523	+	308	21229361	-	MM_3259	-	hypothetical protein
3260	 42.25	0	3962612..3963127	-	171	21229362	-	MM_3260	-	hypothetical protein
3261	 44.72	0	3963323..3964279	-	318	21229363	-	MM_3261	-	hypothetical protein
3262	 45.44	0	3964659..3965393	+	244	21229364	azlC	MM_3262	-	branched chain amino acid ABC transporter
3263	 45.43	0	3965459..3965797	+	112	21229365	azlD	MM_3263	-	branched chain amino acid ABC transporter
43.57	MEAN

4.98	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.