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IslandPath Analysis: Methanosarcina mazei Go1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98

Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3115	 39.51	0	3787325..3788635	+	436	21229217	-	MM_3115	-	hypothetical protein
3116	 46.06	0	3788898..3789455	-	185	21229218	-	MM_3116	-	hypothetical protein
3117	 42.38	0	3789530..3789949	+	139	21229219	-	MM_3117	-	MarR family transcriptional regulator
3118	 48.03	0	3790130..3792517	+	795	21229220	-	MM_3118	-	ATP-dependent protease La
3119	 44.15	0	3792833..3793516	+	227	21229221	-	MM_3119	-	iron-sulfur flavoprotein
3120	 39.84	0	3793605..3793988	-	127	21229222	-	MM_3120	-	hypothetical protein
3121	 50.29	+1	3794275..3795489	-	404	21229223	-	MM_3121	-	hypothetical protein
3122	 44.53	0	3795965..3796759	+	264	21229224	-	MM_3122	-	putative hydrolase
3123	 45.91	0	3796868..3797503	+	211	21229225	-	MM_3123	-	hypothetical protein
3124	 28.85	-2	3797989..3798924	+	311	21229226	-	MM_3124	-	hypothetical protein
3125	 37.23	-1	3799094..3799684	-	196	21229227	-	MM_3125	-	hypothetical protein
3126	 38.79	0	3799881..3800411	+	176	21229228	-	MM_3126	-	hypothetical protein
3127	 39.60	0	3800559..3800861	-	100	21229229	-	MM_3127	-	hypothetical protein
3128	 39.30	0	3801199..3801801	+	200	21229230	-	MM_3128	-	hypothetical protein
3129	 41.85	0	3802252..3802521	+	89	21229231	-	MM_3129	-	hypothetical protein
3130	 47.25	0	3802645..3803988	-	447	21229232	-	MM_3130	-	hypothetical protein
3131	 44.44	0	3804291..3805235	+	314	21229233	-	MM_3131	-	fructokinase
3132	 39.33	0	3805808..3806374	-	188	21229234	-	MM_3132	-	hypothetical protein
3133	 44.71	0	3806631..3807263	-	210	21229235	-	MM_3133	-	hypothetical protein
3134	 47.12	0	3807495..3808379	-	294	21229236	-	MM_3134	-	heat shock protein HtpX
3135	 43.28	0	3809135..3809938	+	267	21229237	-	MM_3135	-	ABC transporter, ATP-binding protein
3136	 47.01	0	3809935..3810687	+	250	21229238	-	MM_3136	-	ABC transporter, permease protein
3137	 38.92	0	3810925..3811551	+	208	21229239	-	MM_3137	-	amino acid transporter LysE
3138	 46.55	0	3812887..3813408	-	173	21229240	-	MM_3138	-	Cob(I)alamin adenosyltransferase
3139	 41.45	0	3813784..3814017	-	77	21229241	-	MM_3139	-	large-conductance mechanosensitive channel
3140	 46.70	0	3814687..3815217	+	176	21229242	-	MM_3140	-	flavodoxin
3141	 48.43	0	3815865..3818726	+	953	21229243	-	MM_3141	-	type I restriction-modification system restriction subunit
3142	 37.84	-1	3818738..3819934	+	398	21229244	-	MM_3142	-	type I restriction-modification system specificity subunit
3143	 42.88	0	3820352..3821545	-	397	21229245	-	MM_3143	-	hypothetical protein
3144	 33.69	-1	3821933..3822214	+	93	21229246	-	MM_3144	-	hypothetical protein
3145	 40.89	0	3822294..3822518	-	74	21229247	-	MM_3145	-	hypothetical protein
3146	 40.03	0	3822556..3824886	-	776	21229248	-	MM_3146	-	hypothetical protein
3147	 46.53	0	3825310..3826824	+	504	21229249	-	MM_3147	-	type I restriction-modification system specificity subunit
3148	 46.07	0	3826965..3827741	-	258	21229250	-	MM_3148	-	exodeoxyribonuclease III
3149	 45.73	0	3828955..3829317	+	120	21229251	-	MM_3149	-	hypothetical protein
3150	 44.57	0	3830177..3831208	+	343	21229252	-	MM_3150	-	methyltransferase
3151	 41.67	0	3831213..3831812	-	199	21229253	-	MM_3151	-	hypothetical protein
3152	 40.62	0	3832037..3832420	-	127	21229254	-	MM_3152	-	hypothetical protein
3153	 42.00	0	3832921..3833370	-	149	21229255	-	MM_3153	-	hypothetical protein
3154	 44.51	0	3833954..3834481	-	175	21229256	-	MM_3154	-	hypothetical protein
3155	 46.11	0	3834790..3835149	-	119	21229257	-	MM_3155	-	hypothetical protein
3156	 46.83	0	3835441..3836574	+	377	21229258	-	MM_3156	-	oxidoreductase
3157	 47.06	0	3836814..3838379	-	521	21229259	-	MM_3157	-	putative 6-aminohexanoate-dimer hydrolase
3158	 32.39	-2	3839209..3840696	+	495	21229260	-	MM_3158	-	hypothetical protein
3159	 31.15	-2	3840744..3842297	+	517	21229261	-	MM_3159	-	hypothetical protein
3160	 36.95	-1	3842524..3843657	-	377	21229262	-	MM_3160	-	transposase
3161	 40.00	0	3843673..3843957	-	94	21229263	-	MM_3161	-	transposase
3162	 36.54	-1	3844614..3844925	+	103	21229264	-	MM_3162	-	hypothetical protein
3163	 36.42	-1	3845071..3845232	-	53	21229265	-	MM_3163	-	hypothetical protein
3164	 45.52	0	3845853..3846722	+	289	21229266	-	MM_3164	-	hypothetical protein
3165	 30.74	-2	3848698..3848967	+	89	21229267	-	MM_3165	-	hypothetical protein
3166	 38.54	-1	3848998..3849381	-	127	21229268	-	MM_3166	-	hypothetical protein
3167	 33.68	-1	3849993..3851423	+	476	21229269	-	MM_3167	-	transposase
3168	 36.12	-1	3852072..3853325	-	417	21229270	-	MM_3168	-	hypothetical protein
3169	 41.45	0	3853443..3853910	-	155	21229271	-	MM_3169	-	hypothetical protein
3170	 44.33	0	3854377..3855231	+	284	21229272	-	MM_3170	-	MerR family transcriptional regulator
3171	 40.02	0	3856425..3857711	+	428	21229273	-	MM_3171	-	hypothetical protein
3172	 43.47	0	3857919..3858776	-	285	21229274	-	MM_3172	-	putative methyltransferase
3173	 40.26	0	3859019..3859321	-	100	21229275	-	MM_3173	-	ArsR family transcriptional regulator
3174	 37.96	-1	3859412..3859627	-	71	21229276	-	MM_3174	-	hypothetical protein
3175	 50.44	+1	3859860..3860315	-	151	21229277	-	MM_3175	-	hypothetical protein
3176	 46.81	0	3860487..3861161	-	224	21229278	-	MM_3176	-	hypothetical protein
3177	 43.10	0	3861352..3862170	+	272	21229279	-	MM_3177	-	hypothetical protein
3178	 41.42	0	3862247..3863965	-	572	21229280	-	MM_3178	-	hypothetical protein
3179	 43.14	0	3864590..3865150	+	186	21229281	-	MM_3179	-	transcriptional regulator
3180	 47.24	0	3865303..3866985	+	560	21229282	-	MM_3180	-	putative acetyl-CoA synthetase
3181	 49.40	+1	3867269..3867517	+	82	21229283	vorC	MM_3181	-	ketoisovalerate oxidoreductase subunit
3182	 49.62	+1	3867537..3868592	+	351	21229284	vorB	MM_3182	-	2-ketoisovalerate ferredoxin reductase
3183	 50.97	+1	3868595..3870040	+	481	21229285	vorA	MM_3183	-	ketoisovalerate oxidoreductase subunit
3184	 35.29	-1	3871448..3871702	-	84	21229286	-	MM_3184	-	hypothetical protein
3185	 42.97	0	3871918..3873090	-	390	21229287	-	MM_3185	-	ornithine decarboxylase
3186	 47.23	0	3873800..3875080	-	426	21229288	-	MM_3186	-	transporter
3187	 46.78	0	3875376..3876572	-	398	21229289	-	MM_3187	-	flavodoxin
3188	 49.24	+1	3876957..3878477	+	506	21229290	-	MM_3188	-	glutamine synthetase
3189	 46.67	0	3878825..3879664	+	279	21229291	-	MM_3189	-	potassium channel protein
3190	 46.31	0	3879791..3880684	+	297	21229292	-	MM_3190	-	hypothetical protein
3191	 51.20	+1	3880799..3881173	+	124	21229293	-	MM_3191	-	hypothetical protein
3192	 47.28	0	3881333..3881755	+	140	21229294	-	MM_3192	-	hypothetical protein
3193	 44.13	0	3881926..3882138	-	70	21229295	-	MM_3193	-	hypothetical protein
3194	 46.77	0	3882272..3883693	-	473	21229296	-	MM_3194	-	DinF protein
3195	 44.66	0	3883718..3884185	-	155	21229297	-	MM_3195	-	MarR family transcriptional regulator
3196	 40.70	0	3884867..3885151	+	94	21229298	-	MM_3196	-	hypothetical protein
3197	 40.88	0	3885353..3885763	+	136	21229299	-	MM_3197	-	hypothetical protein
3198	 47.89	0	3885997..3887391	-	464	21229300	-	MM_3198	-	hypothetical protein
3199	 45.30	0	3887532..3888467	+	311	21229301	-	MM_3199	-	transporter
3200	 24.64	-2	3888696..3888902	-	68	21229302	-	MM_3200	-	hypothetical protein
3201	 46.67	0	3889085..3889804	+	239	21229303	-	MM_3201	-	hypothetical protein
3202	 44.48	0	3889811..3892393	-	860	21229304	-	MM_3202	-	hypothetical protein
3203	 44.71	0	3892730..3894610	-	626	21229305	-	MM_3203	-	hypothetical protein
3204	 45.11	0	3895423..3896916	-	497	21229306	-	MM_3204	-	hypothetical protein
3205	 42.81	0	3897854..3900532	-	892	21229307	-	MM_3205	-	two component system histidine kinase
3206	 38.48	-1	3900582..3900950	-	122	21229308	-	MM_3206	-	response regulator receiver domain-containing protein
3207	 46.20	0	3901838..3904456	+	872	21229309	-	MM_3207	-	protease
3208	 26.96	-2	3904763..3905170	+	135	21229310	-	MM_3208	-	ArsR family transcriptional regulator
3209	 46.04	0	3905363..3906283	+	306	21229311	-	MM_3209	-	transporter
3210	 39.26	0	3906673..3906807	+	44	21229312	-	MM_3210	-	cation efflux protein
3211	 41.89	0	3906804..3907259	+	151	21229313	-	MM_3211	-	cation efflux protein
3212	 49.78	+1	3907900..3909480	-	526	21229314	-	MM_3212	-	phosphoenolpyruvate carboxylase
3213	 48.00	0	3910046..3911668	+	540	21229315	-	MM_3213	-	hydroxylamine reductase
3214	 38.75	0	3911819..3912667	-	282	21229316	-	MM_3214	-	ferredoxin
43.57	MEAN

4.98	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.