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IslandPath Analysis: Methanosarcina mazei Go1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98

Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3058	 44.20	0	3700356..3701027	+	223	21229160	-	MM_3058	-	iron-sulfur flavoprotein
3059	 51.46	+1	3701142..3701930	+	262	21229161	-	MM_3059	-	hypothetical protein
3060	 46.55	0	3702004..3702525	-	173	21229162	-	MM_3060	-	hypothetical protein
3061	 47.99	0	3702633..3705143	-	836	21229163	-	MM_3061	-	hypothetical protein
3062	 48.77	+1	3705182..3706237	-	351	21229164	-	MM_3062	-	hypothetical protein
3063	 50.52	+1	3706265..3708568	-	767	21229165	-	MM_3063	-	calcium dependent protease
3064	 49.08	+1	3708804..3712136	-	1110	21229166	-	MM_3064	-	hypothetical protein
3065	 51.16	+1	3712269..3714686	-	805	21229167	-	MM_3065	-	hypothetical protein
3066	 47.76	0	3715627..3716520	+	297	21229168	-	MM_3066	-	fumarate hydratase
3067	 47.67	0	3716520..3717098	+	192	21229169	-	MM_3067	-	fumarate hydratase
3068	 40.45	0	3717190..3718074	-	294	21229170	-	MM_3068	-	hypothetical protein
3069	 57.02	+2	3718274..3721102	-	942	21229171	-	MM_3069	-	cation-transporting ATPase
3070	 52.78	+1	3721178..3722221	-	347	21229172	-	MM_3070	-	hypothetical protein
3071	 49.70	+1	3722258..3723100	-	280	21229173	-	MM_3071	-	putative membrane transport protein
3072	 44.81	0	3723270..3723818	-	182	21229174	-	MM_3072	-	hypothetical protein
3073	 45.23	0	3724524..3728993	-	1489	21229175	-	MM_3073	-	surface layer protein B
3074	 46.36	0	3729492..3730013	+	173	21229176	-	MM_3074	-	hypothetical protein
3075	 49.04	+1	3730047..3730517	+	156	21229177	-	MM_3075	-	hypothetical protein
3076	 46.83	0	3730798..3733056	+	752	21229178	-	MM_3076	-	DNA topoisomerase I
3077	 41.39	0	3733774..3734220	+	148	21229179	syrB	MM_3077	-	putative transcriptional regulator
3078	 49.24	+1	3734775..3736025	+	416	21229180	-	MM_3078	-	mRNA 3'-end processing factor
3079	 47.04	0	3736283..3736654	+	123	21229181	-	MM_3079	-	hypothetical protein
3080	 47.52	0	3736689..3738683	-	664	21229182	-	MM_3080	-	hypothetical protein
3081	 42.26	0	3739438..3740490	-	350	21229183	-	MM_3081	-	Serine/threonine protein kinase
3082	 43.23	0	3740773..3741954	+	393	21229184	-	MM_3082	-	hypothetical protein
3083	 29.21	-2	3742803..3743093	+	96	21229185	-	MM_3083	-	hypothetical protein
3084	 43.22	0	3744639..3745073	-	144	21229186	-	MM_3084	-	protease I
3085	 48.78	+1	3745285..3746469	-	394	21229187	-	MM_3085	-	cystathionine gamma-synthase
3086	 44.72	0	3746722..3747942	+	406	21229188	-	MM_3086	-	nicotinate phosphoribosyltransferase
3087	 41.63	0	3748526..3749767	-	413	21229189	-	MM_3087	-	hypothetical protein
3088	 48.36	0	3750678..3751409	-	243	21229190	-	MM_3088	-	carbonic anhydrase
3089	 40.49	0	3751638..3752336	+	232	21229191	-	MM_3089	-	hypothetical protein
3090	 46.22	0	3752761..3754134	+	457	21229192	-	MM_3090	-	phycocyanin alpha-subunit
3091	 43.65	0	3754298..3755257	-	319	21229193	-	MM_3091	-	hypothetical protein
3092	 41.25	0	3756195..3756611	+	138	21229194	-	MM_3092	-	transcriptional regulator
3093	 45.16	0	3757175..3758062	+	295	21229195	-	MM_3093	-	hypothetical protein
3094	 43.61	0	3758156..3759352	+	398	21229196	-	MM_3094	-	hypothetical protein
3095	 46.46	0	3760650..3761441	+	263	21229197	-	MM_3095	-	ABC transporter, ATP-binding protein
3096	 44.13	0	3761474..3762112	+	212	21229198	-	MM_3096	-	hypothetical protein
3097	 43.95	0	3762046..3762846	+	266	21229199	-	MM_3097	-	hypothetical protein
3098	 48.02	0	3762879..3764117	+	412	21229200	-	MM_3098	-	ABC transporter, permease protein
3099	 42.56	0	3765780..3767903	-	707	21229201	-	MM_3099	-	two component system histidine kinase
3100	 39.03	0	3768696..3769415	+	239	21229202	-	MM_3100	-	hypothetical protein
3101	 40.92	0	3769586..3771733	-	715	21229203	-	MM_3101	-	two component system histidine kinase
3102	 43.55	0	3772019..3772879	-	286	21229204	-	MM_3102	-	hypothetical protein
3103	 40.95	0	3773259..3773468	-	69	21229205	-	MM_3103	-	hypothetical protein
3104	 43.95	0	3773618..3774022	-	134	21229206	-	MM_3104	-	hypothetical protein
3105	 42.67	0	3774175..3774795	+	206	21229207	-	MM_3105	-	putative cytosine deaminase
3106	 50.22	+1	3775422..3775877	+	151	21229208	-	MM_3106	-	hypothetical protein
3107	 41.72	0	3776164..3776604	-	146	21229209	-	MM_3107	-	hypothetical protein
3108	 41.77	0	3776843..3777826	-	327	21229210	-	MM_3108	-	hypothetical protein
3109	 46.43	0	3778566..3780245	+	559	21229211	-	MM_3109	-	glycogen phosphorylase
3110	 43.91	0	3780417..3781598	-	393	21229212	-	MM_3110	-	hypothetical protein
3111	 47.58	0	3782182..3783501	-	439	21229213	-	MM_3111	-	hypothetical protein
3112	 44.93	0	3784019..3784225	+	68	21229214	-	MM_3112	-	hypothetical protein
3113	 43.31	0	3784559..3786412	-	617	21229215	-	MM_3113	-	oligoendopeptidase F
3114	 42.86	0	3786788..3786997	+	69	21229216	-	MM_3114	-	hypothetical protein
3115	 39.51	0	3787325..3788635	+	436	21229217	-	MM_3115	-	hypothetical protein
3116	 46.06	0	3788898..3789455	-	185	21229218	-	MM_3116	-	hypothetical protein
3117	 42.38	0	3789530..3789949	+	139	21229219	-	MM_3117	-	MarR family transcriptional regulator
3118	 48.03	0	3790130..3792517	+	795	21229220	-	MM_3118	-	ATP-dependent protease La
3119	 44.15	0	3792833..3793516	+	227	21229221	-	MM_3119	-	iron-sulfur flavoprotein
3120	 39.84	0	3793605..3793988	-	127	21229222	-	MM_3120	-	hypothetical protein
3121	 50.29	+1	3794275..3795489	-	404	21229223	-	MM_3121	-	hypothetical protein
3122	 44.53	0	3795965..3796759	+	264	21229224	-	MM_3122	-	putative hydrolase
3123	 45.91	0	3796868..3797503	+	211	21229225	-	MM_3123	-	hypothetical protein
3124	 28.85	-2	3797989..3798924	+	311	21229226	-	MM_3124	-	hypothetical protein
3125	 37.23	-1	3799094..3799684	-	196	21229227	-	MM_3125	-	hypothetical protein
3126	 38.79	0	3799881..3800411	+	176	21229228	-	MM_3126	-	hypothetical protein
3127	 39.60	0	3800559..3800861	-	100	21229229	-	MM_3127	-	hypothetical protein
3128	 39.30	0	3801199..3801801	+	200	21229230	-	MM_3128	-	hypothetical protein
3129	 41.85	0	3802252..3802521	+	89	21229231	-	MM_3129	-	hypothetical protein
3130	 47.25	0	3802645..3803988	-	447	21229232	-	MM_3130	-	hypothetical protein
3131	 44.44	0	3804291..3805235	+	314	21229233	-	MM_3131	-	fructokinase
3132	 39.33	0	3805808..3806374	-	188	21229234	-	MM_3132	-	hypothetical protein
3133	 44.71	0	3806631..3807263	-	210	21229235	-	MM_3133	-	hypothetical protein
3134	 47.12	0	3807495..3808379	-	294	21229236	-	MM_3134	-	heat shock protein HtpX
3135	 43.28	0	3809135..3809938	+	267	21229237	-	MM_3135	-	ABC transporter, ATP-binding protein
3136	 47.01	0	3809935..3810687	+	250	21229238	-	MM_3136	-	ABC transporter, permease protein
3137	 38.92	0	3810925..3811551	+	208	21229239	-	MM_3137	-	amino acid transporter LysE
3138	 46.55	0	3812887..3813408	-	173	21229240	-	MM_3138	-	Cob(I)alamin adenosyltransferase
3139	 41.45	0	3813784..3814017	-	77	21229241	-	MM_3139	-	large-conductance mechanosensitive channel
3140	 46.70	0	3814687..3815217	+	176	21229242	-	MM_3140	-	flavodoxin
3141	 48.43	0	3815865..3818726	+	953	21229243	-	MM_3141	-	type I restriction-modification system restriction subunit
3142	 37.84	-1	3818738..3819934	+	398	21229244	-	MM_3142	-	type I restriction-modification system specificity subunit
3143	 42.88	0	3820352..3821545	-	397	21229245	-	MM_3143	-	hypothetical protein
3144	 33.69	-1	3821933..3822214	+	93	21229246	-	MM_3144	-	hypothetical protein
3145	 40.89	0	3822294..3822518	-	74	21229247	-	MM_3145	-	hypothetical protein
3146	 40.03	0	3822556..3824886	-	776	21229248	-	MM_3146	-	hypothetical protein
3147	 46.53	0	3825310..3826824	+	504	21229249	-	MM_3147	-	type I restriction-modification system specificity subunit
3148	 46.07	0	3826965..3827741	-	258	21229250	-	MM_3148	-	exodeoxyribonuclease III
3149	 45.73	0	3828955..3829317	+	120	21229251	-	MM_3149	-	hypothetical protein
3150	 44.57	0	3830177..3831208	+	343	21229252	-	MM_3150	-	methyltransferase
3151	 41.67	0	3831213..3831812	-	199	21229253	-	MM_3151	-	hypothetical protein
3152	 40.62	0	3832037..3832420	-	127	21229254	-	MM_3152	-	hypothetical protein
3153	 42.00	0	3832921..3833370	-	149	21229255	-	MM_3153	-	hypothetical protein
3154	 44.51	0	3833954..3834481	-	175	21229256	-	MM_3154	-	hypothetical protein
3155	 46.11	0	3834790..3835149	-	119	21229257	-	MM_3155	-	hypothetical protein
3156	 46.83	0	3835441..3836574	+	377	21229258	-	MM_3156	-	oxidoreductase
3157	 47.06	0	3836814..3838379	-	521	21229259	-	MM_3157	-	putative 6-aminohexanoate-dimer hydrolase
43.57	MEAN

4.98	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.