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IslandPath Analysis: Methanosarcina mazei Go1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98

Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2878	 49.32	+1	3456677..3457408	-	243	21228980	-	MM_2878	-	hypothetical protein
2879	 47.81	0	3457745..3458794	-	349	21228981	-	MM_2879	-	TPR repeat-containing protein
2880	 41.55	0	3460071..3460484	+	137	21228982	-	MM_2880	-	response regulator
2881	 43.39	0	3460711..3463275	+	854	21228983	-	MM_2881	-	sensor histidine kinase/response regulator
2882	 43.17	0	3463624..3464721	-	365	21228984	-	MM_2882	-	hypothetical protein
2883	 41.67	0	3465018..3465701	-	227	21228985	-	MM_2883	-	hypothetical protein
2884	 44.18	0	3465819..3466814	-	331	21228986	-	MM_2884	-	hypothetical protein
2885	 44.55	0	3467434..3468039	-	201	21228987	-	MM_2885	-	putative metalloendopeptidase
2886	 41.06	0	3469077..3471083	-	668	21228988	-	MM_2886	-	sensory transduction histidine kinase
2887	 44.60	0	3471568..3471780	+	70	21228989	-	MM_2887	-	hypothetical protein
2888	 42.97	0	3472165..3472911	-	248	21228990	-	MM_2888	-	endonuclease III
2889	 43.97	0	3473108..3473596	-	162	21228991	-	MM_2889	-	hypothetical protein
2890	 26.26	-2	3473636..3473833	-	65	21228992	-	MM_2890	-	hypothetical protein
2891	 44.32	0	3473826..3474653	-	275	21228993	-	MM_2891	-	ABC transporter, permease protein
2892	 45.70	0	3474732..3475184	-	150	21228994	-	MM_2892	-	ABC transporter, permease protein
2893	 42.65	0	3475210..3476562	-	450	21228995	-	MM_2893	-	hypothetical protein
2894	 47.76	0	3476716..3477429	-	237	21228996	-	MM_2894	-	ABC transporter, ATP-binding protein
2895	 43.96	0	3477662..3477868	-	68	21228997	-	MM_2895	-	transcriptional regulator
2896	 40.43	0	3477889..3478212	-	107	21228998	-	MM_2896	-	hypothetical protein
2897	 46.73	0	3478774..3479706	-	310	21228999	-	MM_2897	-	Pirin
2898	 35.01	-1	3480666..3481142	-	158	21229000	-	MM_2898	-	hypothetical protein
2899	 36.79	-1	3482476..3483255	-	259	21229001	-	MM_2899	-	hypothetical protein
2900	 41.31	0	3483456..3484496	-	346	21229002	-	MM_2900	-	hypothetical protein
2901	 37.37	-1	3485042..3485536	+	164	21229003	-	MM_2901	-	transposase
2902	 38.62	0	3485550..3486173	+	207	21229004	-	MM_2902	-	transposase
2903	 34.60	-1	3486296..3487396	+	366	21229005	-	MM_2903	-	transposase
2904	 38.62	0	3487367..3487990	-	207	21229006	-	MM_2904	-	transposase
2905	 37.37	-1	3488004..3488498	-	164	21229007	-	MM_2905	-	transposase
2906	 36.13	-1	3489046..3489510	-	154	21229008	-	MM_2906	-	transposase
2907	 46.07	0	3489704..3490669	-	321	21229009	-	MM_2907	-	Pirin
2908	 38.24	-1	3491164..3491856	+	230	21229010	-	MM_2908	-	hypothetical protein
2909	 43.81	0	3493046..3493627	+	193	21229011	-	MM_2909	-	hypothetical protein
2910	 46.10	0	3493687..3495354	-	555	21229012	-	MM_2910	-	adenine deaminase
2911	 44.74	0	3495669..3496781	+	370	21229013	-	MM_2911	-	phosphoserine aminotransferase
2912	 49.05	+1	3497146..3500898	+	1250	21229014	-	MM_2912	-	5-oxoprolinase
2913	 44.63	0	3500927..3501997	-	356	21229015	purP	MM_2913	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
2914	 44.38	0	3502489..3502995	-	168	21229016	-	MM_2914	-	hypothetical protein
2915	 42.48	0	3503015..3503626	-	203	21229017	-	MM_2915	-	hypothetical protein
2916	 44.44	0	3504011..3504577	+	188	21229018	-	MM_2916	-	flavoredoxin
2917	 45.86	0	3505024..3506220	-	398	21229019	-	MM_2917	-	aldo/keto reductase family oxidoreductase
2918	 44.92	0	3506336..3507517	-	393	21229020	-	MM_2918	-	aldo/keto reductase family oxidoreductase
2919	 43.94	0	3508784..3509113	-	109	21229021	-	MM_2919	-	hypothetical protein
2920	 44.54	0	3509839..3510195	-	118	21229022	-	MM_2920	-	ribosomal-protein-alanine acetyltransferase
2921	 49.21	+1	3510819..3512015	+	398	21229023	-	MM_2921	-	hypothetical protein
2922	 35.57	-1	3512269..3512805	-	178	21229024	-	MM_2922	-	hypothetical protein
2923	 40.77	0	3513038..3516532	-	1164	21229025	-	MM_2923	-	hypothetical protein
2924	 40.25	0	3517564..3518430	-	288	21229026	-	MM_2924	-	ribonuclease BN
2925	 35.31	-1	3518942..3519244	-	100	21229027	-	MM_2925	-	hypothetical protein
2926	 28.95	-2	3519287..3519514	+	75	21229028	-	MM_2926	-	hypothetical protein
2927	 46.50	0	3519487..3521028	-	513	21229029	-	MM_2927	-	heteropolysaccharide repeat-containing protein
2928	 46.24	0	3523527..3524045	-	172	21229030	-	MM_2928	-	hypothetical protein
2929	 49.09	+1	3524213..3524542	-	109	21229031	-	MM_2929	-	hypothetical protein
2930	 42.63	0	3525153..3526346	-	397	21229032	-	MM_2930	-	hypothetical protein
2931	 45.44	0	3526456..3527826	-	456	21229033	-	MM_2931	-	hydrolase
2932	 44.97	0	3528837..3529412	+	191	21229034	-	MM_2932	-	hypothetical protein
2933	 40.69	0	3529549..3531138	-	529	21229035	-	MM_2933	-	hypothetical protein
2934	 33.11	-2	3531855..3532295	-	146	21229036	-	MM_2934	-	hypothetical protein
2935	 39.72	0	3532948..3533370	+	140	21229037	-	MM_2935	-	hypothetical protein
2936	 36.44	-1	3533970..3534323	-	117	21229038	-	MM_2936	-	transposase
2937	 42.60	0	3535236..3537857	+	873	21229039	-	MM_2937	-	hypothetical protein
2938	 41.41	0	3538675..3540903	+	742	21229040	-	MM_2938	-	hypothetical protein
2939	 37.00	-1	3541150..3541776	-	208	21229041	-	MM_2939	-	Serine O-acetyltransferase
2940	 34.79	-1	3542367..3542777	+	136	21229042	-	MM_2940	-	hypothetical protein
2941	 48.94	+1	3543138..3543893	+	251	21229043	-	MM_2941	-	metal dependent hydrolase
2942	 44.64	0	3544170..3544514	+	114	21229044	-	MM_2942	-	hypothetical protein
2943	 44.82	0	3544712..3546052	-	446	21229045	-	MM_2943	-	lipopolysaccharide N-acetylglucosaminyltransferase
2944	 46.79	0	3546112..3547122	-	336	21229046	-	MM_2944	-	hypothetical protein
2945	 45.03	0	3547128..3549512	-	794	21229047	-	MM_2945	-	mannosyltransferase
2946	 43.74	0	3550663..3552690	+	675	21229048	-	MM_2946	-	hypothetical protein
2947	 36.76	-1	3552999..3553523	+	174	21229049	-	MM_2947	-	hypothetical protein
2948	 40.93	0	3553896..3554303	-	135	21229050	-	MM_2948	-	hypothetical protein
2949	 47.76	0	3555322..3555723	-	133	21229051	-	MM_2949	-	hypothetical protein
2950	 37.24	-1	3555774..3556106	-	110	21229052	-	MM_2950	-	hypothetical protein
2951	 42.15	0	3557252..3557716	+	154	21229053	-	MM_2951	-	hypothetical protein
2952	 43.85	0	3560598..3562052	+	484	21229054	-	MM_2952	-	hypothetical protein
2953	 45.17	0	3562191..3562697	-	168	21229055	-	MM_2953	-	transcriptional regulator
2954	 40.13	0	3563198..3563668	-	156	21229056	-	MM_2954	-	transcriptional regulator
2955	 44.05	0	3563665..3566295	-	876	21229057	-	MM_2955	-	sensory transduction histidine kinase
2956	 45.80	0	3566407..3567192	-	261	21229058	-	MM_2956	-	hypothetical protein
2957	 38.93	0	3568185..3569363	+	392	21229059	-	MM_2957	-	transposase
2958	 40.17	0	3570296..3571114	-	272	21229060	-	MM_2958	-	hypothetical protein
2959	 45.59	0	3571453..3572325	-	290	21229061	-	MM_2959	-	hypothetical protein
2960	 43.42	0	3572663..3572890	+	75	21229062	-	MM_2960	-	hypothetical protein
2961	 46.75	0	3573277..3573999	+	240	21229063	mtbC	MM_2961	-	dimethylamine corrinoid protein
2962	 52.81	+1	3574117..3575184	+	355	21229064	mtbB	MM_2962	-	dimethylamine:corrinoid methyltransferase
2963	 43.27	0	3575209..3575520	+	103	21229065	mtbB	MM_2963	-	dimethylamine:corrinoid methyltransferase
2964	 49.03	+1	3575626..3577230	+	534	21229066	mtbP	MM_2964	-	dimethylamine permease
2965	 45.00	0	3577497..3580016	+	839	21229067	-	MM_2965	-	sensory transduction histidine kinase
2966	 50.33	+1	3580216..3581127	-	303	21229068	-	MM_2966	-	hypothetical protein
2967	 50.71	+1	3581963..3585139	+	1058	21229069	ileS	MM_2967	-	isoleucyl-tRNA synthetase
2968	 47.66	0	3585218..3585859	+	213	21229070	-	MM_2968	-	hypothetical protein
2969	 33.92	-1	3587878..3588216	-	112	21229071	-	MM_2969	-	hypothetical protein
2970	 38.89	0	3588034..3588231	+	65	21229072	-	MM_2970	-	hypothetical protein
2971	 32.78	-2	3588369..3588548	+	59	21229073	-	MM_2971	-	hypothetical protein
2972	 44.01	0	3588766..3590142	+	458	21229074	-	MM_2972	-	hypothetical protein
2973	 44.88	0	3590191..3591402	-	403	21229075	-	MM_2973	-	hypothetical protein
2974	 36.85	-1	3591890..3592543	-	217	21229076	-	MM_2974	-	hypothetical protein
2975	 40.72	0	3592545..3593438	-	297	21229077	-	MM_2975	-	hypothetical protein
2976	 49.47	+1	3593860..3596853	-	997	21229078	-	MM_2976	-	type I restriction-modification system restriction subunit
2977	 40.53	0	3596875..3598236	-	453	21229079	-	MM_2977	-	hypothetical protein
43.57	MEAN

4.98	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.