IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2742	 36.15	-1	3280567..3282873	-	768	21228844	-	MM_2742	-	hypothetical protein
2743	 49.51	+1	3283563..3283871	+	102	21228845	-	MM_2743	-	hypothetical protein
2744	 47.34	0	3283991..3285082	-	363	21228846	-	MM_2744	-	hypothetical protein
2745	 44.74	0	3285315..3286436	-	373	21228847	-	MM_2745	-	hypothetical protein
2746	 40.35	0	3286936..3288189	-	417	21228848	-	MM_2746	-	hypothetical protein
2747	 46.94	0	3288741..3289967	+	408	21228849	-	MM_2747	-	hypothetical protein
2748	 44.86	0	3290910..3293798	+	962	21228850	-	MM_2748	-	sensory transduction histidine kinase
2749	 48.04	0	3294005..3295534	+	509	21228851	-	MM_2749	-	aminoacyl-histidine dipeptidase
2750	 41.58	0	3295617..3296174	-	185	21228852	-	MM_2750	-	hypothetical protein
2751	 47.65	0	3296298..3296786	-	162	21228853	-	MM_2751	-	hypothetical protein
2752	 45.27	0	3297188..3298276	-	362	21228854	-	MM_2752	-	hypothetical protein
2753	 34.31	-1	3298724..3299956	+	410	21228855	-	MM_2753	-	hypothetical protein
2754	 32.74	-2	3300817..3303024	+	735	21228856	-	MM_2754	-	hypothetical protein
2755	 34.75	-1	3304162..3304656	+	164	21228857	-	MM_2755	-	hypothetical protein
2756	 36.08	-1	3304813..3305430	+	205	21228858	-	MM_2756	-	hypothetical protein
2757	 32.66	-2	3305636..3305932	+	98	21228859	-	MM_2757	-	hypothetical protein
2758	 40.49	0	3305933..3306463	+	176	21228860	-	MM_2758	-	hypothetical protein
2759	 38.99	0	3306939..3307256	+	105	21228861	-	MM_2759	-	hypothetical protein
2760	 39.53	0	3307425..3312317	+	1630	21228862	-	MM_2760	-	hypothetical protein
2761	 38.07	-1	3312354..3312944	+	196	21228863	-	MM_2761	-	hypothetical protein
2762	 41.86	0	3313280..3313537	+	85	21228864	-	MM_2762	-	hypothetical protein
2763	 33.89	-1	3314653..3315192	+	179	21228865	-	MM_2763	-	putative DNA recombinase
2764	 38.70	0	3315583..3316029	+	148	21228866	-	MM_2764	-	hypothetical protein
2765	 38.48	-1	3316030..3316398	+	122	21228867	-	MM_2765	-	hypothetical protein
2766	 40.65	0	3316406..3316870	+	154	21228868	-	MM_2766	-	hypothetical protein
2767	 38.83	0	3316871..3317779	+	302	21228869	-	MM_2767	-	hypothetical protein
2768	 42.06	0	3318706..3319026	-	106	21228870	-	MM_2768	-	hypothetical protein
2769	 47.92	0	3319284..3320558	-	424	21228871	-	MM_2769	-	Iron-containing alcohol dehydrogenase
2770	 46.52	0	3320721..3322700	+	659	21228872	-	MM_2770	-	glycogen debranching protein
2771	 48.24	0	3322785..3323804	+	339	21228873	-	MM_2771	-	hypothetical protein
2772	 42.20	0	3324088..3324369	+	93	21228874	-	MM_2772	-	hypothetical protein
2773	 40.02	0	3324730..3327153	-	807	21228875	-	MM_2773	-	two component system histidine kinase
2774	 46.09	0	3327606..3328091	+	161	21228876	-	MM_2774	-	hypothetical protein
2775	 51.05	+1	3328177..3329079	+	300	21228877	-	MM_2775	-	hypothetical protein
2776	 33.85	-1	3329294..3329488	-	64	21228878	-	MM_2776	-	hypothetical protein
2777	 47.87	0	3329961..3330242	+	93	21228879	-	MM_2777	-	acylphosphatase
2778	 44.69	0	3330318..3331391	-	357	21228880	-	MM_2778	-	cobalt-zinc-cadmium resistance protein
2779	 45.26	0	3331814..3333247	-	477	21228881	-	MM_2779	-	putative phosphoglycerate mutase
2780	 43.88	0	3333574..3334455	+	293	21228882	-	MM_2780	-	hypothetical protein
2781	 43.92	0	3334587..3334775	+	62	21228883	-	MM_2781	-	hypothetical protein
2782	 46.53	0	3335707..3336714	+	335	21228884	-	MM_2782	-	glyceraldehyde-3-phosphate dehydrogenase
2783	 48.01	0	3336891..3337694	+	267	21228885	-	MM_2783	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
2784	 45.52	0	3337654..3338523	+	289	21228886	-	MM_2784	-	hypothetical protein
2785	 46.12	0	3338845..3340197	+	450	21228887	aksA	MM_2785	-	trans-homoaconitate synthase
2786	 44.03	0	3340405..3340890	-	161	21228888	-	MM_2786	-	hypothetical protein
2787	 47.51	0	3341286..3343571	-	761	21228889	-	MM_2787	-	hypothetical protein
2788	 45.72	0	3344517..3346268	-	583	21228890	-	MM_2788	-	indolepyruvate ferredoxin oxidoreductase, subunit alpha
2789	 47.17	0	3346334..3347374	-	346	21228891	-	MM_2789	-	hypothetical protein
2790	 38.86	0	3347703..3348281	-	192	21228892	-	MM_2790	-	iron-sulfur flavoprotein
2791	 43.77	0	3348596..3349285	-	229	21228893	radC	MM_2791	-	DNA repair protein RadC
2792	 48.51	0	3349614..3350450	+	278	21228894	-	MM_2792	-	molybdopterin converting factor, subunit 2
2793	 45.63	0	3350576..3351250	+	224	21228895	-	MM_2793	-	molybdopterin-guanine dinucleotide biosynthesis protein
2794	 48.61	+1	3351456..3352031	-	191	21228896	-	MM_2794	-	hypothetical protein
2795	 44.26	0	3352234..3353139	+	301	21228897	-	MM_2795	-	hypothetical protein
2796	 46.53	0	3353520..3354428	-	302	21228898	-	MM_2796	-	hypothetical protein
2797	 43.12	0	3354760..3355617	+	285	21228899	-	MM_2797	-	Pirin
2798	 44.54	0	3357284..3358693	+	469	21228900	-	MM_2798	-	hypothetical protein
2799	 36.13	-1	3359095..3359559	+	154	21228901	-	MM_2799	-	transposase
2800	 44.51	0	3359988..3360497	+	169	21228902	-	MM_2800	-	hypothetical protein
2801	 46.30	0	3360696..3361775	+	359	21228903	-	MM_2801	-	hypothetical protein
2802	 44.27	0	3361979..3362554	+	191	21228904	-	MM_2802	-	hypothetical protein
2803	 48.95	+1	3362679..3363344	-	221	21228905	cooC	MM_2803	-	carbon monoxide dehydrogenase accessory protein
2804	 43.00	0	3363661..3365832	-	723	21228906	-	MM_2804	-	hypothetical protein
2805	 44.94	0	3366239..3367720	-	493	21228907	-	MM_2805	-	asparagine synthetase [glutamine-hydrolyzing]
2806	 45.24	0	3368918..3369169	+	83	21228908	-	MM_2806	-	phosphoribosylformylglycinamidine synthase subunit PurS
2807	 45.78	0	3369255..3369953	+	232	21228909	-	MM_2807	-	phosphoribosylformylglycinamidine synthase subunit I
2808	 42.36	0	3370598..3371716	-	372	21228910	-	MM_2808	-	hypothetical protein
2809	 42.40	0	3372099..3372947	+	282	21228911	-	MM_2809	-	hypothetical protein
2810	 43.69	0	3373033..3373824	-	263	21228912	-	MM_2810	-	hypothetical protein
2811	 41.79	0	3373995..3374621	+	208	21228913	-	MM_2811	-	hypothetical protein
2812	 48.29	0	3374674..3376311	-	545	21228914	pheT	MM_2812	-	phenylalanyl-tRNA synthetase subunit beta
2813	 44.58	0	3376602..3377357	+	251	21228915	-	MM_2813	-	hypothetical protein
2814	 48.27	0	3377458..3378120	+	220	21228916	rnhB	MM_2814	-	ribonuclease HII
2815	 48.87	+1	3378246..3379088	-	280	21228917	-	MM_2815	-	metal dependent hydrolase
2816	 44.04	0	3379428..3380174	+	248	21228918	-	MM_2816	-	hypothetical protein
2817	 43.21	0	3380313..3380960	-	215	21228919	-	MM_2817	-	anthranilate synthase component II
2818	 44.48	0	3380961..3382799	-	612	21228920	-	MM_2818	-	anthranilate synthase component I
2819	 46.24	0	3382786..3383490	-	234	21228921	-	MM_2819	-	N-(5'-phosphoribosyl)anthranilate isomerase
2820	 48.07	0	3383487..3384599	-	370	21228922	-	MM_2820	-	anthranilate phosphoribosyltransferase
2821	 47.67	0	3384632..3385447	-	271	21228923	trpA	MM_2821	-	tryptophan synthase subunit alpha
2822	 50.66	+1	3385449..3386660	-	403	161485666	-	MM_2822	-	tryptophan synthase subunit beta
2823	 50.00	+1	3386809..3387612	-	267	21228925	-	MM_2823	-	indole-3-glycerol phosphate synthase
2824	 44.94	0	3388292..3389092	+	266	21228926	-	MM_2824	-	glucose-6-phosphate dehydrogenase
2825	 40.88	0	3389284..3389919	+	211	21228927	-	MM_2825	-	hypothetical protein
2826	 36.44	-1	3390107..3390814	+	235	21228928	-	MM_2826	-	hypothetical protein
2827	 42.71	0	3390790..3392175	+	461	21228929	-	MM_2827	-	hypothetical protein
2828	 43.56	0	3392325..3392891	-	188	21228930	-	MM_2828	-	hypothetical protein
2829	 46.15	0	3393854..3394321	+	155	21228931	-	MM_2829	-	peptidyl-prolyl cis-trans isomerase
2830	 44.77	0	3394904..3396565	+	553	21228932	-	MM_2830	-	ribonucleoside-diphosphate
2831	 43.48	0	3396724..3397689	+	321	21228933	-	MM_2831	-	ABC-Type transporter, permease protein
2832	 45.21	0	3397793..3398710	+	305	21228934	-	MM_2832	-	ABC-Type transporter, permease protein
2833	 47.08	0	3398933..3399616	+	227	21228935	-	MM_2833	-	ABC transporter, ATP-binding protein
2834	 47.81	0	3399626..3400081	+	151	21228936	-	MM_2834	-	hypothetical protein
2835	 42.82	0	3400242..3400631	-	129	21228937	-	MM_2835	-	hypothetical protein
2836	 47.55	0	3401314..3402600	+	428	21228938	-	MM_2836	-	enolase
2837	 35.58	-1	3402783..3404027	-	414	21228939	-	MM_2837	-	transposase
2838	 33.73	-1	3404097..3404345	-	82	21228940	-	MM_2838	-	hypothetical protein
2839	 47.43	0	3404768..3406363	+	531	21228941	-	MM_2839	-	MoxR-like ATPase
2840	 45.90	0	3406635..3408281	+	548	21228942	-	MM_2840	-	hypothetical protein
2841	 45.13	0	3408360..3410114	-	584	21228943	-	MM_2841	-	acetolactate synthase
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.