IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2710	 38.87	0	3239209..3240255	-	348	21228812	-	MM_2710	-	hypothetical protein
2711	 42.00	0	3240471..3241670	+	399	21228813	-	MM_2711	-	hypothetical protein
2712	 44.01	0	3242109..3242642	+	177	21228814	-	MM_2712	-	hypothetical protein
2713	 47.05	0	3242664..3243662	+	332	21228815	-	MM_2713	-	homoserine dehydrogenase
2714	 46.51	0	3243731..3245437	+	568	21228816	-	MM_2714	-	ATP-dependent DNA ligase
2715	 45.87	0	3245507..3246136	-	209	21228817	-	MM_2715	-	GTP-binding protein
2716	 44.14	0	3246133..3247122	-	329	21228818	-	MM_2716	-	hypothetical protein
2717	 40.37	0	3247665..3249269	-	534	21228819	-	MM_2717	-	hypothetical protein
2718	 45.39	0	3249809..3250729	+	306	21228820	-	MM_2718	-	hypothetical protein
2719	 36.38	-1	3250793..3251581	-	262	21228821	-	MM_2719	-	hypothetical protein
2720	 42.98	0	3252433..3255822	+	1129	21228822	-	MM_2720	-	hypothetical protein
2721	 46.59	0	3256026..3256304	-	92	21228823	-	MM_2721	-	hypothetical protein
2722	 41.98	0	3256475..3256960	+	161	21228824	-	MM_2722	-	hypothetical protein
2723	 47.15	0	3257182..3259599	+	805	21228825	-	MM_2723	-	phosphoenolpyruvate synthase
2724	 40.91	0	3259894..3260025	+	43	21228826	-	MM_2724	-	hypothetical protein
2725	 32.46	-2	3260461..3260805	+	114	21228827	-	MM_2725	-	transposase
2726	 40.11	0	3261029..3261397	+	122	21228828	-	MM_2726	-	hypothetical protein
2727	 37.81	-1	3262044..3263339	+	431	21228829	-	MM_2727	-	hypothetical protein
2728	 39.72	0	3263635..3264981	+	448	21228830	-	MM_2728	-	hypothetical protein
2729	 31.60	-2	3265933..3266220	+	95	21228831	-	MM_2729	-	transposase
2730	 43.49	0	3267105..3268355	+	416	21228832	-	MM_2730	-	hypothetical protein
2731	 41.63	0	3268601..3269239	-	212	21228833	marC	MM_2731	-	multiple antibiotic resistance protein
2732	 43.59	0	3269558..3270181	-	207	21228834	-	MM_2732	-	hypothetical protein
2733	 39.88	0	3270295..3273501	-	1068	21228835	-	MM_2733	-	hypothetical protein
2734	 43.23	0	3273727..3274029	-	100	21228836	-	MM_2734	-	hypothetical protein
2735	 44.09	0	3274005..3274283	-	92	21228837	-	MM_2735	-	hypothetical protein
2736	 45.47	0	3274362..3274913	-	183	21228838	-	MM_2736	-	hypothetical protein
2737	 43.10	0	3275116..3275709	-	197	21228839	-	MM_2737	-	hypothetical protein
2738	 42.25	0	3275786..3276301	-	171	21228840	-	MM_2738	-	hypothetical protein
2739	 37.10	-1	3276324..3277544	-	406	21228841	-	MM_2739	-	type I restriction-modification system specificity subunit
2740	 46.17	0	3277544..3279070	-	508	21228842	-	MM_2740	-	type I restriction-modification system specificity subunit
2741	 27.95	-2	3279447..3280541	-	364	21228843	-	MM_2741	-	hypothetical protein
2742	 36.15	-1	3280567..3282873	-	768	21228844	-	MM_2742	-	hypothetical protein
2743	 49.51	+1	3283563..3283871	+	102	21228845	-	MM_2743	-	hypothetical protein
2744	 47.34	0	3283991..3285082	-	363	21228846	-	MM_2744	-	hypothetical protein
2745	 44.74	0	3285315..3286436	-	373	21228847	-	MM_2745	-	hypothetical protein
2746	 40.35	0	3286936..3288189	-	417	21228848	-	MM_2746	-	hypothetical protein
2747	 46.94	0	3288741..3289967	+	408	21228849	-	MM_2747	-	hypothetical protein
2748	 44.86	0	3290910..3293798	+	962	21228850	-	MM_2748	-	sensory transduction histidine kinase
2749	 48.04	0	3294005..3295534	+	509	21228851	-	MM_2749	-	aminoacyl-histidine dipeptidase
2750	 41.58	0	3295617..3296174	-	185	21228852	-	MM_2750	-	hypothetical protein
2751	 47.65	0	3296298..3296786	-	162	21228853	-	MM_2751	-	hypothetical protein
2752	 45.27	0	3297188..3298276	-	362	21228854	-	MM_2752	-	hypothetical protein
2753	 34.31	-1	3298724..3299956	+	410	21228855	-	MM_2753	-	hypothetical protein
2754	 32.74	-2	3300817..3303024	+	735	21228856	-	MM_2754	-	hypothetical protein
2755	 34.75	-1	3304162..3304656	+	164	21228857	-	MM_2755	-	hypothetical protein
2756	 36.08	-1	3304813..3305430	+	205	21228858	-	MM_2756	-	hypothetical protein
2757	 32.66	-2	3305636..3305932	+	98	21228859	-	MM_2757	-	hypothetical protein
2758	 40.49	0	3305933..3306463	+	176	21228860	-	MM_2758	-	hypothetical protein
2759	 38.99	0	3306939..3307256	+	105	21228861	-	MM_2759	-	hypothetical protein
2760	 39.53	0	3307425..3312317	+	1630	21228862	-	MM_2760	-	hypothetical protein
2761	 38.07	-1	3312354..3312944	+	196	21228863	-	MM_2761	-	hypothetical protein
2762	 41.86	0	3313280..3313537	+	85	21228864	-	MM_2762	-	hypothetical protein
2763	 33.89	-1	3314653..3315192	+	179	21228865	-	MM_2763	-	putative DNA recombinase
2764	 38.70	0	3315583..3316029	+	148	21228866	-	MM_2764	-	hypothetical protein
2765	 38.48	-1	3316030..3316398	+	122	21228867	-	MM_2765	-	hypothetical protein
2766	 40.65	0	3316406..3316870	+	154	21228868	-	MM_2766	-	hypothetical protein
2767	 38.83	0	3316871..3317779	+	302	21228869	-	MM_2767	-	hypothetical protein
2768	 42.06	0	3318706..3319026	-	106	21228870	-	MM_2768	-	hypothetical protein
2769	 47.92	0	3319284..3320558	-	424	21228871	-	MM_2769	-	Iron-containing alcohol dehydrogenase
2770	 46.52	0	3320721..3322700	+	659	21228872	-	MM_2770	-	glycogen debranching protein
2771	 48.24	0	3322785..3323804	+	339	21228873	-	MM_2771	-	hypothetical protein
2772	 42.20	0	3324088..3324369	+	93	21228874	-	MM_2772	-	hypothetical protein
2773	 40.02	0	3324730..3327153	-	807	21228875	-	MM_2773	-	two component system histidine kinase
2774	 46.09	0	3327606..3328091	+	161	21228876	-	MM_2774	-	hypothetical protein
2775	 51.05	+1	3328177..3329079	+	300	21228877	-	MM_2775	-	hypothetical protein
2776	 33.85	-1	3329294..3329488	-	64	21228878	-	MM_2776	-	hypothetical protein
2777	 47.87	0	3329961..3330242	+	93	21228879	-	MM_2777	-	acylphosphatase
2778	 44.69	0	3330318..3331391	-	357	21228880	-	MM_2778	-	cobalt-zinc-cadmium resistance protein
2779	 45.26	0	3331814..3333247	-	477	21228881	-	MM_2779	-	putative phosphoglycerate mutase
2780	 43.88	0	3333574..3334455	+	293	21228882	-	MM_2780	-	hypothetical protein
2781	 43.92	0	3334587..3334775	+	62	21228883	-	MM_2781	-	hypothetical protein
2782	 46.53	0	3335707..3336714	+	335	21228884	-	MM_2782	-	glyceraldehyde-3-phosphate dehydrogenase
2783	 48.01	0	3336891..3337694	+	267	21228885	-	MM_2783	-	bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase
2784	 45.52	0	3337654..3338523	+	289	21228886	-	MM_2784	-	hypothetical protein
2785	 46.12	0	3338845..3340197	+	450	21228887	aksA	MM_2785	-	trans-homoaconitate synthase
2786	 44.03	0	3340405..3340890	-	161	21228888	-	MM_2786	-	hypothetical protein
2787	 47.51	0	3341286..3343571	-	761	21228889	-	MM_2787	-	hypothetical protein
2788	 45.72	0	3344517..3346268	-	583	21228890	-	MM_2788	-	indolepyruvate ferredoxin oxidoreductase, subunit alpha
2789	 47.17	0	3346334..3347374	-	346	21228891	-	MM_2789	-	hypothetical protein
2790	 38.86	0	3347703..3348281	-	192	21228892	-	MM_2790	-	iron-sulfur flavoprotein
2791	 43.77	0	3348596..3349285	-	229	21228893	radC	MM_2791	-	DNA repair protein RadC
2792	 48.51	0	3349614..3350450	+	278	21228894	-	MM_2792	-	molybdopterin converting factor, subunit 2
2793	 45.63	0	3350576..3351250	+	224	21228895	-	MM_2793	-	molybdopterin-guanine dinucleotide biosynthesis protein
2794	 48.61	+1	3351456..3352031	-	191	21228896	-	MM_2794	-	hypothetical protein
2795	 44.26	0	3352234..3353139	+	301	21228897	-	MM_2795	-	hypothetical protein
2796	 46.53	0	3353520..3354428	-	302	21228898	-	MM_2796	-	hypothetical protein
2797	 43.12	0	3354760..3355617	+	285	21228899	-	MM_2797	-	Pirin
2798	 44.54	0	3357284..3358693	+	469	21228900	-	MM_2798	-	hypothetical protein
2799	 36.13	-1	3359095..3359559	+	154	21228901	-	MM_2799	-	transposase
2800	 44.51	0	3359988..3360497	+	169	21228902	-	MM_2800	-	hypothetical protein
2801	 46.30	0	3360696..3361775	+	359	21228903	-	MM_2801	-	hypothetical protein
2802	 44.27	0	3361979..3362554	+	191	21228904	-	MM_2802	-	hypothetical protein
2803	 48.95	+1	3362679..3363344	-	221	21228905	cooC	MM_2803	-	carbon monoxide dehydrogenase accessory protein
2804	 43.00	0	3363661..3365832	-	723	21228906	-	MM_2804	-	hypothetical protein
2805	 44.94	0	3366239..3367720	-	493	21228907	-	MM_2805	-	asparagine synthetase [glutamine-hydrolyzing]
2806	 45.24	0	3368918..3369169	+	83	21228908	-	MM_2806	-	phosphoribosylformylglycinamidine synthase subunit PurS
2807	 45.78	0	3369255..3369953	+	232	21228909	-	MM_2807	-	phosphoribosylformylglycinamidine synthase subunit I
2808	 42.36	0	3370598..3371716	-	372	21228910	-	MM_2808	-	hypothetical protein
2809	 42.40	0	3372099..3372947	+	282	21228911	-	MM_2809	-	hypothetical protein
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.