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IslandPath Analysis: Methanosarcina mazei Go1

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98

Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2650	 51.45	+1	3165905..3166699	+	264	21228752	-	MM_2650	-	hydrolase
2651	 35.47	-1	3166989..3167315	+	108	21228753	-	MM_2651	-	hypothetical protein
2652	 44.44	0	3167640..3168107	-	155	21228754	-	MM_2652	-	hypothetical protein
2653	 47.62	0	3168334..3169299	-	321	21228755	-	MM_2653	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
2654	 47.62	0	3169657..3170853	-	398	21228756	-	MM_2654	-	hypothetical protein
2655	 37.61	-1	3171814..3173052	+	412	21228757	-	MM_2655	-	hypothetical protein
2656	 49.27	+1	3174328..3175080	-	250	21228758	-	MM_2656	-	peptidyl-prolyl cis-trans isomerase
2657	 40.66	0	3175787..3176209	+	140	21228759	-	MM_2657	-	transcriptional regulator
2658	 34.39	-1	3176501..3177070	+	189	21228760	-	MM_2658	-	acetyltransferase
2659	 36.43	-1	3177337..3177852	+	171	21228761	-	MM_2659	-	acetyltransferase
2660	 40.80	0	3178006..3179184	+	392	21228762	-	MM_2660	-	sodium-calcium exchanger protein
2661	 43.12	0	3179273..3179701	-	142	21228763	-	MM_2661	-	hypothetical protein
2662	 48.42	0	3179943..3181334	+	463	21228764	-	MM_2662	-	Na(+)-linked D-alanine glycine permease
2663	 45.65	0	3181471..3182745	+	424	21228765	-	MM_2663	-	hypothetical protein
2664	 45.27	0	3182808..3184013	+	401	21228766	-	MM_2664	-	hypothetical protein
2665	 44.36	0	3184026..3184823	+	265	21228767	-	MM_2665	-	ABC transporter, ATP-binding protein
2666	 43.00	0	3185349..3186176	+	275	21228768	-	MM_2666	-	hypothetical protein
2667	 44.11	0	3186251..3187252	+	333	21228769	-	MM_2667	-	MoxR-like ATPase
2668	 43.65	0	3187293..3188174	+	293	21228770	-	MM_2668	-	hypothetical protein
2669	 44.25	0	3188183..3190069	+	628	21228771	-	MM_2669	-	hypothetical protein
2670	 45.09	0	3190066..3192651	+	861	21228772	-	MM_2670	-	hypothetical protein
2671	 42.62	0	3194277..3195482	-	401	21228773	-	MM_2671	-	hypothetical protein
2672	 41.40	0	3195931..3196116	-	61	21228774	-	MM_2672	-	hypothetical protein
2673	 38.89	0	3196278..3196583	-	101	21228775	-	MM_2673	-	hypothetical protein
2674	 46.31	0	3196660..3199650	-	996	21228776	-	MM_2674	-	hypothetical protein
2675	 38.49	-1	3199762..3201042	-	426	21228777	-	MM_2675	-	Serine protease inhibitor
2676	 42.51	0	3201412..3202752	+	446	21228778	-	MM_2676	-	hypothetical protein
2677	 40.00	0	3202956..3203135	-	59	21228779	-	MM_2677	-	hypothetical protein
2678	 36.71	-1	3203467..3203703	+	78	21228780	-	MM_2678	-	hypothetical protein
2679	 34.38	-1	3204091..3204954	+	287	21228781	-	MM_2679	-	hypothetical protein
2680	 27.20	-2	3205117..3205377	-	86	21228782	-	MM_2680	-	hypothetical protein
2681	 32.62	-2	3205365..3205646	-	93	21228783	-	MM_2681	-	hypothetical protein
2682	 42.32	0	3206043..3206732	+	229	21228784	-	MM_2682	-	transposase
2683	 40.53	0	3207154..3208653	+	499	21228785	-	MM_2683	-	reverse transcriptase
2684	 38.10	-1	3209431..3209619	+	62	21228786	-	MM_2684	-	transposase
2685	 37.24	-1	3209616..3210203	+	195	21228787	-	MM_2685	-	transposase
2686	 34.57	-1	3210237..3210641	-	134	21228788	-	MM_2686	-	transposase
2687	 25.90	-2	3210982..3211923	-	313	21228789	-	MM_2687	-	hypothetical protein
2688	 30.99	-2	3212077..3213354	-	425	21228790	-	MM_2688	-	hypothetical protein
2689	 40.00	0	3213768..3214052	+	94	21228791	-	MM_2689	-	transposase
2690	 36.95	-1	3214068..3215201	+	377	21228792	-	MM_2690	-	transposase
2691	 38.56	-1	3215724..3216125	+	133	21228793	-	MM_2691	-	hypothetical protein
2692	 33.48	-2	3216274..3217665	-	463	21228794	-	MM_2692	-	hypothetical protein
2693	 31.34	-2	3218252..3219307	+	351	21228795	-	MM_2693	-	hypothetical protein
2694	 43.04	0	3220398..3221087	+	229	21228796	-	MM_2694	-	transposase
2695	 42.32	0	3221510..3222121	+	203	21228797	-	MM_2695	-	reverse transcriptase
2696	 33.33	-2	3222199..3222423	-	74	21228798	-	MM_2696	-	hypothetical protein
2697	 39.29	0	3222462..3222881	-	139	21228799	-	MM_2697	-	hypothetical protein
2698	 38.65	0	3223005..3223757	+	250	21228800	-	MM_2698	-	reverse transcriptase
2699	 40.80	0	3223789..3224538	+	249	21228801	-	MM_2699	-	transposase
2700	 36.47	-1	3224535..3225332	+	265	21228802	-	MM_2700	-	transposase
2701	 34.33	-1	3226648..3227547	+	299	21228803	-	MM_2701	-	hypothetical protein
2702	 31.50	-2	3227818..3230166	+	782	21228804	-	MM_2702	-	hypothetical protein
2703	 38.25	-1	3230195..3231517	-	440	21228805	-	MM_2703	-	type I restriction-modification system specificity subunit
2704	 49.68	+1	3231501..3232925	-	474	21228806	-	MM_2704	-	type I restriction-modification system specificity subunit
2705	 43.74	0	3232922..3235603	-	893	21228807	-	MM_2705	-	type I restriction-modification system restriction subunit
2706	 42.51	0	3236326..3236652	+	108	21228808	-	MM_2706	-	hypothetical protein
2707	 39.46	0	3236708..3236968	-	86	21228809	-	MM_2707	-	hypothetical protein
2708	 38.85	0	3236981..3237796	-	271	21228810	-	MM_2708	-	hypothetical protein
2709	 40.21	0	3238771..3239061	-	96	21228811	-	MM_2709	-	hypothetical protein
2710	 38.87	0	3239209..3240255	-	348	21228812	-	MM_2710	-	hypothetical protein
2711	 42.00	0	3240471..3241670	+	399	21228813	-	MM_2711	-	hypothetical protein
2712	 44.01	0	3242109..3242642	+	177	21228814	-	MM_2712	-	hypothetical protein
2713	 47.05	0	3242664..3243662	+	332	21228815	-	MM_2713	-	homoserine dehydrogenase
2714	 46.51	0	3243731..3245437	+	568	21228816	-	MM_2714	-	ATP-dependent DNA ligase
2715	 45.87	0	3245507..3246136	-	209	21228817	-	MM_2715	-	GTP-binding protein
2716	 44.14	0	3246133..3247122	-	329	21228818	-	MM_2716	-	hypothetical protein
2717	 40.37	0	3247665..3249269	-	534	21228819	-	MM_2717	-	hypothetical protein
2718	 45.39	0	3249809..3250729	+	306	21228820	-	MM_2718	-	hypothetical protein
2719	 36.38	-1	3250793..3251581	-	262	21228821	-	MM_2719	-	hypothetical protein
2720	 42.98	0	3252433..3255822	+	1129	21228822	-	MM_2720	-	hypothetical protein
2721	 46.59	0	3256026..3256304	-	92	21228823	-	MM_2721	-	hypothetical protein
2722	 41.98	0	3256475..3256960	+	161	21228824	-	MM_2722	-	hypothetical protein
2723	 47.15	0	3257182..3259599	+	805	21228825	-	MM_2723	-	phosphoenolpyruvate synthase
2724	 40.91	0	3259894..3260025	+	43	21228826	-	MM_2724	-	hypothetical protein
2725	 32.46	-2	3260461..3260805	+	114	21228827	-	MM_2725	-	transposase
2726	 40.11	0	3261029..3261397	+	122	21228828	-	MM_2726	-	hypothetical protein
2727	 37.81	-1	3262044..3263339	+	431	21228829	-	MM_2727	-	hypothetical protein
2728	 39.72	0	3263635..3264981	+	448	21228830	-	MM_2728	-	hypothetical protein
2729	 31.60	-2	3265933..3266220	+	95	21228831	-	MM_2729	-	transposase
2730	 43.49	0	3267105..3268355	+	416	21228832	-	MM_2730	-	hypothetical protein
2731	 41.63	0	3268601..3269239	-	212	21228833	marC	MM_2731	-	multiple antibiotic resistance protein
2732	 43.59	0	3269558..3270181	-	207	21228834	-	MM_2732	-	hypothetical protein
2733	 39.88	0	3270295..3273501	-	1068	21228835	-	MM_2733	-	hypothetical protein
2734	 43.23	0	3273727..3274029	-	100	21228836	-	MM_2734	-	hypothetical protein
2735	 44.09	0	3274005..3274283	-	92	21228837	-	MM_2735	-	hypothetical protein
2736	 45.47	0	3274362..3274913	-	183	21228838	-	MM_2736	-	hypothetical protein
2737	 43.10	0	3275116..3275709	-	197	21228839	-	MM_2737	-	hypothetical protein
2738	 42.25	0	3275786..3276301	-	171	21228840	-	MM_2738	-	hypothetical protein
2739	 37.10	-1	3276324..3277544	-	406	21228841	-	MM_2739	-	type I restriction-modification system specificity subunit
2740	 46.17	0	3277544..3279070	-	508	21228842	-	MM_2740	-	type I restriction-modification system specificity subunit
2741	 27.95	-2	3279447..3280541	-	364	21228843	-	MM_2741	-	hypothetical protein
2742	 36.15	-1	3280567..3282873	-	768	21228844	-	MM_2742	-	hypothetical protein
2743	 49.51	+1	3283563..3283871	+	102	21228845	-	MM_2743	-	hypothetical protein
2744	 47.34	0	3283991..3285082	-	363	21228846	-	MM_2744	-	hypothetical protein
2745	 44.74	0	3285315..3286436	-	373	21228847	-	MM_2745	-	hypothetical protein
2746	 40.35	0	3286936..3288189	-	417	21228848	-	MM_2746	-	hypothetical protein
2747	 46.94	0	3288741..3289967	+	408	21228849	-	MM_2747	-	hypothetical protein
2748	 44.86	0	3290910..3293798	+	962	21228850	-	MM_2748	-	sensory transduction histidine kinase
2749	 48.04	0	3294005..3295534	+	509	21228851	-	MM_2749	-	aminoacyl-histidine dipeptidase
43.57	MEAN

4.98	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.