IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
195	 38.72	0	270598..272454	+	618	21226297	-	MM_0195	-	hypothetical protein
196	 29.67	-2	272451..273323	+	290	21226298	-	MM_0196	-	hypothetical protein
197	 32.44	-2	273320..274666	+	448	21226299	-	MM_0197	-	hypothetical protein
198	 40.15	0	275374..276738	-	454	21226300	-	MM_0198	-	ATP-dependent DNA helicase
199	 39.39	0	277046..277177	-	43	21226301	-	MM_0199	-	hypothetical protein
200	 34.81	-1	277460..277798	+	112	21226302	-	MM_0200	-	hypothetical protein
201	 40.86	0	277773..278144	+	123	21226303	-	MM_0201	-	hypothetical protein
202	 46.38	0	278172..278378	-	68	21226304	-	MM_0202	-	hypothetical protein
203	 40.49	0	278848..279867	+	339	21226305	-	MM_0203	-	hypothetical protein
204	 33.33	-2	280555..281289	+	244	21226306	-	MM_0204	-	hypothetical protein
205	 46.41	0	281636..281872	+	78	21226307	-	MM_0205	-	hypothetical protein
206	 35.28	-1	281900..282310	+	136	21226308	-	MM_0206	-	hypothetical protein
207	 44.87	0	282909..283532	-	207	21226309	-	MM_0207	-	hypothetical protein
208	 44.89	0	283525..283896	-	123	21226310	-	MM_0208	-	hypothetical protein
209	 45.32	0	284316..284774	-	152	21226311	-	MM_0209	-	hypothetical protein
210	 41.54	0	285039..285233	-	64	21226312	-	MM_0210	-	hypothetical protein
211	 44.14	0	286021..288195	+	724	21226313	-	MM_0211	-	cysteine proteinase
212	 44.17	0	288319..288558	-	79	21226314	-	MM_0212	-	hypothetical protein
213	 48.13	0	288722..290059	-	445	21226315	recJ	MM_0213	-	putative single-stranded-DNA-specific exonuclease
214	 44.37	0	290422..291807	-	461	21226316	-	MM_0214	-	hypothetical protein
215	 47.49	0	292853..293968	-	371	21226317	-	MM_0215	-	hypothetical protein
216	 43.14	0	293965..294780	-	271	21226318	-	MM_0216	-	hypothetical protein
217	 44.33	0	294833..295441	-	202	21226319	-	MM_0217	-	hypothetical protein
218	 46.23	0	295621..297837	-	738	21226320	-	MM_0218	-	hypothetical protein
219	 41.27	0	298722..299855	+	377	21226321	-	MM_0219	-	hypothetical protein
220	 38.62	0	299981..300226	-	81	21226322	-	MM_0220	-	hypothetical protein
221	 49.33	+1	300659..302383	-	574	21226323	-	MM_0221	-	Fe-S oxidoreductase
222	 52.11	+1	302788..303570	-	260	21226324	-	MM_0222	-	ribulose-1,5-biphosphate synthetase
223	 48.55	+1	304125..304814	-	229	21226325	-	MM_0223	-	hypothetical protein
224	 42.86	0	305497..305706	+	69	21226326	-	MM_0224	-	molybdenum-pterin-binding-protein
225	 47.77	0	306104..306664	+	186	21226327	-	MM_0225	-	hypothetical protein
226	 45.48	0	306684..307037	+	117	21226328	-	MM_0226	-	hypothetical protein
227	 46.48	0	307252..307464	-	70	21226329	-	MM_0227	-	hypothetical protein
228	 43.39	0	308202..308390	-	62	21226330	-	MM_0228	-	hypothetical protein
229	 44.30	0	308473..308700	-	75	21226331	-	MM_0229	-	hypothetical protein
230	 41.33	0	309343..310392	+	349	21226332	-	MM_0230	-	sodium-calcium exchanger
231	 42.11	0	311027..311698	-	223	21226333	-	MM_0231	-	hypothetical protein
232	 44.89	0	312030..312401	+	123	21226334	-	MM_0232	-	hypothetical protein
233	 45.26	0	312628..313440	-	270	21226335	-	MM_0233	-	alanyl-tRNA synthetase
234	 46.89	0	313694..315154	-	486	21226336	-	MM_0234	-	hypothetical protein
235	 45.54	0	317354..318631	-	425	21226337	-	MM_0235	-	hypothetical protein
236	 44.48	0	318992..319879	+	295	21226338	-	MM_0236	-	putative mechanosensitive ion channel
237	 41.87	0	320091..320453	-	120	21226339	-	MM_0237	-	hypothetical protein
238	 45.73	0	320656..321381	+	241	21226340	-	MM_0238	-	hypothetical protein
239	 49.45	+1	321496..322308	-	270	21226341	-	MM_0239	-	hypothetical protein
240	 45.48	0	322783..323169	-	128	21226342	-	MM_0240	-	ferredoxin
241	 47.17	0	323172..324674	-	500	21226343	-	MM_0241	-	hypothetical protein
242	 46.71	0	325004..325459	+	151	21226344	-	MM_0242	-	glycerol-3-phosphate cytidylyltransferase
243	 48.82	+1	325483..326625	-	380	21226345	-	MM_0243	-	aspartate aminotransferase
244	 50.37	+1	326679..327083	-	134	21226346	ribH	MM_0244	-	riboflavin synthase subunit beta
245	 46.67	0	327133..327597	-	154	21226347	-	MM_0245	-	riboflavin synthase
246	 47.44	0	327684..328853	-	389	21226348	-	MM_0246	-	Serine-pyruvate aminotransferase
247	 45.21	0	329160..329723	-	187	21226349	-	MM_0247	-	putative inosine monophosphate dehydrogenase
248	 49.89	+1	330322..332616	-	764	21226350	-	MM_0248	-	cell division cycle protein
249	 44.14	0	332703..333359	-	218	21226351	-	MM_0249	-	BRAMP
250	 36.24	-1	333454..334587	-	377	21226352	-	MM_0250	-	transposase
251	 40.35	0	334603..334887	-	94	21226353	-	MM_0251	-	transposase
252	 34.65	-1	335338..335565	-	75	21226354	-	MM_0252	-	hypothetical protein
253	 47.95	0	337562..339394	-	610	21226355	-	MM_0253	-	replication factor C large subunit
254	 49.42	+1	339782..340639	+	285	21226356	-	MM_0254	-	N5-methyl-tetrahydromethanopterin:coenzyme M methyltransferase subunit X
255	 47.01	0	340711..341229	+	172	21226357	-	MM_0255	-	tetrahydromethanopterin S-methyltransferase subunit A
256	 48.12	0	341401..342333	+	310	21226358	-	MM_0256	-	tetrahydromethanopterin S-methyltransferase subunit H
257	 44.94	0	342691..343233	+	180	21226359	-	MM_0257	-	hypothetical protein
258	 31.84	-2	343393..344529	+	378	21226360	-	MM_0258	-	transposase
259	 50.72	+1	345352..347013	-	553	21226361	-	MM_0259	-	dihydroxy-acid dehydratase
260	 44.13	0	348362..350185	+	607	21226362	-	MM_0260	-	putative sensory transduction protein kinase
261	 45.78	0	350388..350837	+	149	21226363	-	MM_0261	-	hypothetical protein
262	 42.61	0	350979..351776	-	265	21226364	-	MM_0262	-	hypothetical protein
263	 44.21	0	352470..352892	-	140	21226365	-	MM_0263	-	hypothetical protein
264	 42.52	0	353472..353765	-	97	21226366	-	MM_0264	-	hypothetical protein
265	 48.88	+1	353927..356524	-	865	21226367	-	MM_0265	-	hypothetical protein
266	 41.70	0	357394..358194	-	266	21226368	-	MM_0266	-	hypothetical protein
267	 45.02	0	358480..358770	-	96	21226369	-	MM_0267	-	hypothetical protein
268	 43.09	0	359318..359563	-	81	21226370	-	MM_0268	-	hypothetical protein
269	 48.30	0	360219..360746	+	175	21226371	-	MM_0269	-	hypothetical protein
270	 41.67	0	360999..361334	-	111	21226372	-	MM_0270	-	hypothetical protein
271	 43.30	0	361367..361657	-	96	21226373	-	MM_0271	-	hypothetical protein
272	 43.69	0	361956..362621	+	221	21226374	-	MM_0272	-	hypothetical protein
273	 33.04	-2	362814..365843	-	1009	21226375	-	MM_0273	-	hypothetical protein
274	 34.19	-1	365840..366307	-	155	21226376	-	MM_0274	-	putative endonuclease
275	 37.60	-1	366310..368112	-	600	21226377	-	MM_0275	-	hypothetical protein
276	 36.08	-1	368115..371942	-	1275	21226378	-	MM_0276	-	superfamily II DNA/RNA helicase
277	 35.85	-1	372163..372837	-	224	21226379	-	MM_0277	-	T/G-specific DNA glycosylase
278	 37.34	-1	372834..374105	-	423	21226380	-	MM_0278	-	DNA-cytosine methyltransferase
279	 51.45	+1	374329..377325	+	998	21226381	-	MM_0279	-	membrane alanine aminopeptidase
280	 42.04	0	377774..378106	+	110	21226382	-	MM_0280	-	hypothetical protein
281	 40.52	0	378199..378546	+	115	21226383	-	MM_0281	-	hypothetical protein
282	 49.01	+1	378966..380183	+	405	21226384	-	MM_0282	-	threonine synthase
283	 50.07	+1	380460..383375	+	971	21226385	leuS	MM_0283	-	leucyl-tRNA synthetase
284	 43.76	0	383733..384653	-	306	21226386	-	MM_0284	-	putative amidohydrolase
285	 46.39	0	384738..385388	-	216	21226387	-	MM_0285	-	hypothetical protein
286	 42.97	0	386031..386528	+	165	21226388	-	MM_0286	-	pyruvoyl-dependent arginine decarboxylase
287	 48.57	+1	386949..387998	+	349	21226389	-	MM_0287	-	putative deoxyhypusine synthase
288	 42.15	0	388062..388583	+	173	21226390	-	MM_0288	-	ArsR family transcriptional regulator
289	 49.56	+1	388583..389371	+	262	21226391	-	MM_0289	-	transcriptional regulator
290	 48.27	0	389639..390187	+	182	21226392	-	MM_0290	-	hypothetical protein
291	 47.75	0	390339..390560	-	73	21226393	-	MM_0291	-	hypothetical protein
292	 50.18	+1	390887..391456	-	189	21226394	-	MM_0292	-	hypothetical protein
293	 47.95	0	391457..392722	-	421	21226395	-	MM_0293	-	replication factor A
294	 45.56	0	393471..395261	-	596	21226396	-	MM_0294	-	Na(+)/H(+) antiporter, putative
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.