IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2213	 33.55	-2	2634042..2638184	-	1380	21228315	-	MM_2213	-	putative glycosyltransferase
2214	 36.24	-1	2638189..2639703	-	504	21228316	-	MM_2214	-	polysaccharide ABC transporter ATP-binding protein
2215	 37.53	-1	2639707..2640468	-	253	21228317	-	MM_2215	-	polysaccharide ABC transporter permease
2216	 41.23	0	2640482..2641228	-	248	21228318	-	MM_2216	-	glucose-1-phosphate thymidylyltransferase
2217	 37.99	-1	2642360..2643304	+	314	21228319	-	MM_2217	-	hypothetical protein
2218	 37.67	-1	2643372..2644478	-	368	21228320	-	MM_2218	-	transposase
2219	 40.48	0	2644938..2645525	-	195	21228321	-	MM_2219	-	hypothetical protein
2220	 38.37	-1	2645883..2646776	-	297	21228322	-	MM_2220	-	hypothetical protein
2221	 36.62	-1	2646754..2647695	-	313	21228323	-	MM_2221	-	glycosyltransferase
2222	 43.90	0	2648169..2649341	-	390	21228324	-	MM_2222	-	galactosyltransferase
2223	 45.81	0	2649351..2650496	-	381	21228325	-	MM_2223	-	dolichyl-phosphate glucose synthetase
2224	 49.52	+1	2650713..2651342	+	209	21228326	-	MM_2224	-	TrpR binding protein WrbA
2225	 47.82	0	2652173..2653711	+	512	21228327	-	MM_2225	-	glucoamylase
2226	 50.75	+1	2653471..2654199	+	242	21228328	-	MM_2226	-	glucoamylase
2227	 42.92	0	2654349..2654786	-	145	21228329	-	MM_2227	-	acetyltransferase
2228	 48.02	0	2654828..2656114	-	428	21228330	-	MM_2228	-	putative amidohydrolase
2229	 47.56	0	2656499..2657440	+	313	21228331	-	MM_2229	-	hypothetical protein
2230	 38.94	0	2657472..2658095	-	207	21228332	-	MM_2230	-	transposase
2231	 38.53	-1	2658305..2658997	-	230	21228333	-	MM_2231	-	transposase
2232	 35.45	-1	2659152..2659481	-	109	21228334	-	MM_2232	-	transposase
2233	 45.89	0	2661186..2662682	-	498	21228335	-	MM_2233	-	hypothetical protein
2234	 46.94	0	2662946..2664466	+	506	21228336	-	MM_2234	-	hypothetical protein
2235	 48.49	0	2665106..2666464	+	452	21228337	-	MM_2235	-	hypothetical protein
2236	 40.27	0	2667116..2667490	+	124	21228338	-	MM_2236	-	hypothetical protein
2237	 39.18	0	2667663..2668004	-	113	21228339	-	MM_2237	-	ArsR family transcriptional regulator
2238	 33.33	-2	2668086..2668475	-	129	21228340	-	MM_2238	-	hypothetical protein
2239	 32.21	-2	2668784..2669230	-	148	21228341	-	MM_2239	-	hypothetical protein
2240	 41.92	0	2669541..2670122	+	193	21228342	-	MM_2240	-	hypothetical protein
2241	 42.17	0	2670126..2670770	+	214	21228343	-	MM_2241	-	cytochrome c-type biogenesis protein CcdA
2242	 38.36	-1	2670925..2671362	+	145	21228344	-	MM_2242	-	ArsR family transcriptional regulator
2243	 43.91	0	2671417..2672163	+	248	21228345	arsM	MM_2243	-	arsenite S-adenosylmethyltransferase
2244	 42.78	0	2672430..2672789	+	119	21228346	-	MM_2244	-	arsenate reductase
2245	 45.22	0	2672873..2673772	-	299	21228347	-	MM_2245	-	hypothetical protein
2246	 40.82	0	2673949..2674389	-	146	21228348	-	MM_2246	-	ArsR family transcriptional regulator
2247	 33.65	-1	2675235..2675546	+	103	21228349	-	MM_2247	-	hypothetical protein
2248	 38.48	-1	2676033..2677004	+	323	21228350	-	MM_2248	-	hypothetical protein
2249	 35.50	-1	2677089..2677319	+	76	21228351	-	MM_2249	-	hypothetical protein
2250	 37.07	-1	2677352..2677672	+	106	21228352	-	MM_2250	-	hypothetical protein
2251	 46.99	0	2677688..2678236	-	182	21228353	-	MM_2251	-	tetrahydromethanopterin S-methyltransferase subunit A
2252	 38.40	-1	2678452..2679852	-	466	21228354	-	MM_2252	-	hypothetical protein
2253	 45.78	0	2679995..2681923	-	642	21228355	-	MM_2253	-	dihydropyrimidinase
2254	 38.01	-1	2682145..2682465	+	106	21228356	-	MM_2254	-	hypothetical protein
2255	 37.50	-1	2682531..2683082	-	183	21228357	-	MM_2255	-	hypothetical protein
2256	 39.63	0	2683364..2684062	-	232	21228358	-	MM_2256	-	hypothetical protein
2257	 41.03	0	2684699..2684932	-	77	21228359	-	MM_2257	-	hypothetical protein
2258	 45.79	0	2685037..2685333	-	98	21228360	-	MM_2258	-	hypothetical protein
2259	 42.03	0	2685349..2685693	-	114	21228361	-	MM_2259	-	hypothetical protein
2260	 39.86	0	2685716..2686159	-	147	21228362	-	MM_2260	-	hypothetical protein
2261	 40.89	0	2686134..2686940	-	268	21228363	-	MM_2261	-	hypothetical protein
2262	 42.48	0	2687244..2688041	-	265	21228364	-	MM_2262	-	hypothetical protein
2263	 48.22	0	2688720..2689028	-	102	21228365	rps10p	MM_2263	-	30S ribosomal protein S10P
2264	 50.51	+1	2689067..2690335	-	422	21228366	-	MM_2264	-	elongation factor 1-alpha
2265	 50.02	+1	2690690..2692882	-	730	21228367	-	MM_2265	-	elongation factor EF-2
2266	 49.30	+1	2692946..2693515	-	189	21228368	-	MM_2266	-	30S ribosomal protein S7P
2267	 49.18	+1	2693512..2693940	-	142	21228369	rps12P	MM_2267	-	30S ribosomal protein S12P
2268	 42.49	0	2694046..2694471	-	141	21228370	nusA	MM_2268	-	transcription elongation factor NusA-like protein
2269	 43.91	0	2694492..2694803	-	103	21228371	-	MM_2269	-	50S ribosomal protein L30e
2270	 47.92	0	2695038..2696264	-	408	21228372	-	MM_2270	-	DNA-directed RNA polymerase subunit A''
2271	 50.51	+1	2696261..2698903	-	880	21228373	-	MM_2271	-	DNA-directed RNA polymerase subunit alpha
2272	 48.82	+1	2698917..2700731	-	604	21228374	-	MM_2272	-	DNA-directed RNA polymerase subunit B'
2273	 46.80	0	2700746..2702341	-	531	21228375	-	MM_2273	-	DNA-directed RNA polymerase subunit beta''
2274	 40.43	0	2702561..2702884	-	107	21228376	rpoH	MM_2274	-	DNA-directed RNA polymerase subunit H
2275	 42.24	0	2703485..2707000	-	1171	21228377	-	MM_2275	-	sensory transduction histidine kinase
2276	 43.59	0	2707585..2710908	-	1107	21228378	-	MM_2276	-	sensory transduction histidine kinase
2277	 41.88	0	2711444..2715223	-	1259	21228379	-	MM_2277	-	sensory transduction histidine kinase
2278	 48.79	+1	2715977..2717212	-	411	21228380	-	MM_2278	-	S-adenosyl-L-homocysteine hydrolase
2279	 48.47	0	2717501..2718874	-	457	21228381	-	MM_2279	-	N-ethylammeline chlorohydrolase
2280	 46.94	0	2719363..2720016	-	217	21228382	-	MM_2280	-	hypothetical protein
2281	 49.34	+1	2720047..2720808	-	253	21228383	-	MM_2281	-	hypothetical protein
2282	 50.94	+1	2721219..2722121	-	300	21228384	-	MM_2282	-	hypothetical protein
2283	 49.32	+1	2722300..2723700	-	466	21228385	-	MM_2283	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2284	 38.41	-1	2724078..2724629	+	183	21228386	-	MM_2284	-	hypothetical protein
2285	 41.89	0	2724332..2724553	-	73	21228387	-	MM_2285	-	hypothetical protein
2286	 47.60	0	2725064..2725960	+	298	21228388	-	MM_2286	-	hypothetical protein
2287	 40.05	0	2726470..2727303	+	277	21228389	-	MM_2287	-	hypothetical protein
2288	 45.85	0	2727361..2728167	+	268	21228390	ftsJ	MM_2288	-	methyltransferase
2289	 50.08	+1	2728321..2728965	+	214	21228391	-	MM_2289	-	hypothetical protein
2290	 41.34	0	2729681..2731054	+	457	21228392	-	MM_2290	-	cell surface protein
2291	 45.19	0	2731443..2732159	-	238	21228393	-	MM_2291	-	Zinc metalloprotease
2292	 49.03	+1	2732159..2735287	-	1042	21228394	-	MM_2292	-	type I restriction-modification system restriction subunit
2293	 45.78	0	2735284..2736504	-	406	21228395	-	MM_2293	-	type I restriction-modification system specificity subunit
2294	 49.48	+1	2736501..2738927	-	808	21228396	-	MM_2294	-	type I restriction-modification system specificity subunit
2295	 42.06	0	2740105..2742408	+	767	21228397	-	MM_2295	-	surface layer protein B
2296	 38.85	0	2742809..2743987	-	392	21228398	-	MM_2296	-	hypothetical protein
2297	 47.52	0	2744419..2746356	-	645	21228399	-	MM_2297	-	hypothetical protein
2298	 46.00	0	2746370..2749228	-	952	21228400	-	MM_2298	-	hypothetical protein
2299	 45.20	0	2749527..2750714	-	395	21228401	-	MM_2299	-	hypothetical protein
2300	 44.88	0	2750918..2751610	+	230	21228402	-	MM_2300	-	metal-dependent hydrolase
2301	 50.08	+1	2751912..2753816	-	634	21228403	-	MM_2301	-	carbon monoxide dehydrogenase
2302	 45.53	0	2754351..2755613	+	420	21228404	-	MM_2302	-	hypothetical protein
2303	 46.50	0	2755749..2757047	+	432	21228405	-	MM_2303	-	transcriptional regulator
2304	 36.13	-1	2757397..2757861	+	154	21228406	-	MM_2304	-	transposase
2305	 46.61	0	2758132..2759796	-	554	21228407	-	MM_2305	-	sodium/proline symporter
2306	 48.20	0	2760600..2761877	-	425	21228408	-	MM_2306	-	glutamyl-tRNA(Gln) amidotransferase subunit D
2307	 46.95	0	2762194..2763669	-	491	21228409	-	MM_2307	-	argininosuccinate lyase
2308	 44.17	0	2763886..2764494	+	202	21228410	-	MM_2308	-	methyltransferase
2309	 42.20	0	2764567..2765502	-	311	21228411	-	MM_2309	-	hypothetical protein
2310	 44.80	0	2765668..2767341	+	557	21228412	-	MM_2310	-	ubiquinone biosynthesis protein
2311	 38.46	-1	2767603..2767719	+	38	21228413	-	MM_2311	-	COP associated protein
2312	 43.38	0	2768283..2769098	-	271	21228414	vhoC	MM_2312	-	F420-nonreducing hydrogenase I, cytochrome B subunit
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.