IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2071	 39.92	0	2466804..2469413	-	869	21228173	-	MM_2071	-	hypothetical protein
2072	 45.26	0	2470547..2471200	+	217	21228174	-	MM_2072	-	putative dinucleotide-utilizing enzyme
2073	 46.67	0	2471811..2472725	+	304	21228175	-	MM_2073	-	quinolinate synthetase
2074	 39.84	0	2473128..2473772	-	214	21228176	-	MM_2074	-	hypothetical protein
2075	 43.95	0	2475006..2475890	+	294	21228177	ubiA	MM_2075	-	prenyltransferase
2076	 48.09	0	2476039..2477271	-	410	21228178	-	MM_2076	-	S-adenosylmethionine synthetase
2077	 45.30	0	2477548..2478291	-	247	21228179	-	MM_2077	-	hypothetical protein
2078	 40.41	0	2478733..2479170	+	145	21228180	-	MM_2078	-	hypothetical protein
2079	 44.78	0	2479613..2480005	+	130	21228181	-	MM_2079	-	thioredoxin
2080	 44.78	0	2480108..2480911	-	267	21228182	-	MM_2080	-	ABC transporter, ATP-binding protein
2081	 43.88	0	2481066..2481719	-	217	21228183	-	MM_2081	-	ABC transporter, ATP-binding protein
2082	 49.27	+1	2482032..2482985	+	317	21228184	-	MM_2082	-	putative deoxyhypusine synthase
2083	 49.32	+1	2482990..2483652	+	220	21228185	-	MM_2083	-	orotidine 5'-phosphate decarboxylase
2084	 46.85	0	2483969..2485381	-	470	21228186	-	MM_2084	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
2085	 50.19	+1	2485385..2486695	-	436	21228187	-	MM_2085	-	acetyl-CoA decarbonylase/synthase complex subunit delta
2086	 44.36	0	2487034..2487795	-	253	21228188	-	MM_2086	-	nitrogenase iron protein
2087	 48.27	0	2487851..2489263	-	470	21228189	-	MM_2087	-	acetyl-CoA decarbonylase/synthase complex subunit beta
2088	 46.20	0	2489289..2489801	-	170	21228190	-	MM_2088	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
2089	 51.22	+1	2489804..2492224	-	806	21228191	-	MM_2089	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
2090	 44.97	0	2494808..2495374	+	188	21228192	-	MM_2090	-	HTH DNA-binding protein
2091	 44.67	0	2495440..2496612	-	390	21228193	-	MM_2091	-	putative transport channel protein
2092	 45.72	0	2496904..2497767	+	287	21228194	-	MM_2092	-	CODH nickel-insertion accessory protein
2093	 50.08	+1	2498379..2500181	+	600	21228195	iorA	MM_2093	-	indolepyruvate oxidoreductase, subunit
2094	 49.25	+1	2500178..2500780	+	200	21228196	iorB	MM_2094	-	indolepyruvate oxidoreductase subunit B
2095	 39.81	0	2500871..2501410	-	179	21228197	-	MM_2095	-	hypothetical protein
2096	 41.62	0	2501719..2502696	+	325	21228198	-	MM_2096	-	UDP-N-acetylglucosamine-1-phosphate transferase
2097	 44.33	0	2502799..2503362	-	187	21228199	-	MM_2097	-	hypothetical protein
2098	 45.80	0	2503554..2504564	-	336	21228200	-	MM_2098	-	hypothetical protein
2099	 27.12	-2	2507953..2509110	-	385	21228201	-	MM_2099	-	hypothetical protein
2100	 32.45	-2	2510270..2511058	-	262	21228202	-	MM_2100	-	hypothetical protein
2101	 31.55	-2	2511149..2512609	-	486	21228203	-	MM_2101	-	heteropolysaccharide repeat-containing protein
2102	 32.01	-2	2512591..2513574	-	327	21228204	-	MM_2102	-	glycosyltransferase
2103	 38.37	-1	2513776..2514510	-	244	21228205	-	MM_2103	-	putative methyltransferase
2104	 24.43	-2	2514931..2516019	-	362	21228206	-	MM_2104	-	hypothetical protein
2105	 28.29	-2	2516177..2517307	-	376	21228207	-	MM_2105	-	putative glycosyltransferase
2106	 33.42	-2	2517336..2518451	-	371	21228208	-	MM_2106	-	putative glycosyltransferase
2107	 30.37	-2	2518486..2519361	-	291	21228209	-	MM_2107	-	glycosyltransferase
2108	 33.01	-2	2519608..2521143	-	511	21228210	-	MM_2108	-	hypothetical protein
2109	 37.70	-1	2521184..2522077	-	297	21228211	-	MM_2109	-	glycosyltransferase
2110	 38.60	0	2522138..2523163	-	341	21228212	-	MM_2110	-	hypothetical protein
2111	 41.13	0	2523160..2523531	-	123	21228213	-	MM_2111	-	galactoside-O-acetyltransferase
2112	 42.67	0	2523676..2524692	-	338	21228214	-	MM_2112	-	hypothetical protein
2113	 43.03	0	2524694..2525518	-	274	21228215	-	MM_2113	-	hypothetical protein
2114	 41.73	0	2525927..2526772	+	281	21228216	-	MM_2114	-	hypothetical protein
2115	 43.16	0	2526897..2528087	-	396	21228217	-	MM_2115	-	protease HTPX-like protein
2116	 34.14	-1	2528368..2528616	+	82	21228218	-	MM_2116	-	hypothetical protein
2117	 43.36	0	2528662..2531085	+	807	21228219	-	MM_2117	-	hypothetical protein
2118	 46.83	0	2531905..2532393	+	162	21228220	-	MM_2118	-	hypothetical protein
2119	 44.93	0	2533190..2533672	+	160	21228221	-	MM_2119	-	hypothetical protein
2120	 47.74	0	2534493..2535068	+	191	21228222	-	MM_2120	-	hypothetical protein
2121	 48.15	0	2535233..2535637	+	134	21228223	-	MM_2121	-	hypothetical protein
2122	 46.35	0	2536074..2537264	+	396	21228224	-	MM_2122	-	putative serine/threonine protein kinase
2123	 43.56	0	2537280..2537543	+	87	21228225	-	MM_2123	-	hypothetical protein
2124	 51.38	+1	2538501..2539514	+	337	21228226	rpl3p	MM_2124	-	50S ribosomal protein L3P
2125	 52.36	+1	2539521..2540282	+	253	21228227	rpl4lp	MM_2125	-	50S ribosomal protein L4P
2126	 42.97	0	2540279..2540527	+	82	21228228	rplW	MM_2126	-	50S ribosomal protein L23
2127	 53.00	+1	2540538..2541254	+	238	21228229	rpl2p	MM_2127	-	50S ribosomal protein L2P
2128	 49.15	+1	2541270..2541680	+	136	21228230	rps19p	MM_2128	-	30S ribosomal protein S19P
2129	 46.71	0	2541692..2542147	+	151	21228231	rpl22p	MM_2129	-	50S ribosomal protein L22P
2130	 50.32	+1	2542148..2543071	+	307	21228232	rps3p	MM_2130	-	30S ribosomal protein S3P
2131	 48.53	0	2543071..2543274	+	67	21228233	rpmC	MM_2131	-	50S ribosomal protein L29
2132	 43.24	0	2543264..2543596	+	110	21228234	-	MM_2132	-	ribonuclease P protein component 1
2133	 44.55	0	2543601..2543930	+	109	161485670	rps17p	MM_2133	-	30S ribosomal protein S17P
2134	 50.38	+1	2543927..2544325	+	132	161485669	rpl14p	MM_2134	-	50S ribosomal protein L14P
2135	 50.14	+1	2544318..2544686	+	122	21228237	rpl24p	MM_2135	-	50S ribosomal protein L24P
2136	 46.33	0	2544700..2545407	+	235	21228238	-	MM_2136	-	30S ribosomal protein S4e
2137	 49.80	+1	2545400..2545909	+	169	21228239	rpl5p	MM_2137	-	50S ribosomal protein L5P
2138	 48.37	0	2545910..2546062	+	50	21228240	rps14P	MM_2138	-	30S ribosomal protein S14P
2139	 46.56	0	2546073..2546465	+	130	21228241	rps8p	MM_2139	-	30S ribosomal protein S8P
2140	 45.57	0	2546480..2547010	+	176	21228242	rpl6p	MM_2140	-	50S ribosomal protein L6P
2141	 47.82	0	2547021..2547455	+	144	21228243	rpl32e	MM_2141	-	50S ribosomal protein L32e
2142	 48.92	+1	2547448..2547909	+	153	21228244	rpl19e	MM_2142	-	50S ribosomal protein L19e
2143	 48.19	0	2547926..2548450	+	174	161485668	rpl18p	MM_2143	-	50S ribosomal protein L18P
2144	 50.95	+1	2548460..2549089	+	209	21228246	rps5p	MM_2144	-	30S ribosomal protein S5P
2145	 48.48	0	2549091..2549552	+	153	21228247	rpl30p	MM_2145	-	50S ribosomal protein L30P
2146	 49.65	+1	2549563..2549985	+	140	21228248	rpl15p	MM_2146	-	50S ribosomal protein L15P
2147	 47.56	0	2550126..2551601	+	491	21228249	-	MM_2147	-	preprotein translocase subunit SecY
2148	 47.84	0	2551694..2552341	+	215	21228250	adk	MM_2148	-	adenylate kinase
2149	 48.04	0	2552548..2553057	+	169	21228251	-	MM_2149	-	phosphoribosylaminoimidazole carboxylase
2150	 41.94	0	2553465..2553743	+	92	21228252	-	MM_2150	-	hypothetical protein
2151	 47.99	0	2553921..2554466	-	181	21228253	-	MM_2151	-	carbonic anhydrase
2152	 47.50	0	2555012..2555632	+	206	21228254	-	MM_2152	-	hypothetical protein
2153	 46.33	0	2555644..2556174	+	176	21228255	-	MM_2153	-	cytidylate kinase
2154	 51.92	+1	2556353..2557369	+	338	21228256	-	MM_2154	-	H/ACA RNA-protein complex component Cbf5p
2155	 51.33	+1	2557860..2558348	+	162	21228257	rps13p	MM_2155	-	30S ribosomal protein S13P
2156	 50.61	+1	2558370..2559029	+	219	21228258	rps4p	MM_2156	-	30S ribosomal protein S4
2157	 52.49	+1	2559032..2559412	+	126	21228259	rps11p	MM_2157	-	30S ribosomal protein S11P
2158	 49.56	+1	2559485..2560285	+	266	21228260	-	MM_2158	-	DNA-directed RNA polymerase subunit D
2159	 37.99	-1	2561438..2562898	-	486	21228261	-	MM_2159	-	hypothetical protein
2160	 34.26	-1	2563737..2564168	+	143	21228262	-	MM_2160	-	hypothetical protein
2161	 46.34	0	2564772..2565317	-	181	21228263	-	MM_2161	-	hypothetical protein
2162	 39.66	0	2565457..2565804	-	115	21228264	-	MM_2162	-	hypothetical protein
2163	 44.54	0	2566275..2566961	-	228	21228265	hypB	MM_2163	-	hydrogenase expression/formation protein
2164	 43.30	0	2567172..2567432	-	86	21228266	hypC	MM_2164	-	hydrogenase expression/formation protein
2165	 34.91	-1	2567938..2568444	+	168	21228267	-	MM_2165	-	transposase
2166	 29.52	-2	2568410..2568724	+	104	21228268	-	MM_2166	-	hypothetical protein
2167	 32.68	-2	2568799..2570025	+	408	21228269	-	MM_2167	-	transposase
2168	 34.50	-1	2570318..2570575	+	85	21228270	-	MM_2168	-	transposase
2169	 48.41	0	2571365..2572525	+	386	21228271	vhtG	MM_2169	-	F420-nonreducing hydrogenase II precursor
2170	 47.35	0	2572533..2574308	+	591	21228272	vhtA	MM_2170	-	F420-nonreducing hydrogenase II, large subunit
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.