IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 46.94	0	178642..179949	+	435	21226246	-	MM_0144	-	phosphoribosylamine--glycine ligase
145	 49.39	+1	180118..181026	+	302	161485684	-	MM_0145	-	ornithine carbamoyltransferase
146	 33.84	-1	182613..183398	+	261	21226248	-	MM_0146	-	transcriptional regulator
147	 38.96	0	183717..184427	+	236	21226249	-	MM_0147	-	iron-sulfur flavoprotein
148	 46.87	0	184446..185243	+	265	21226250	-	MM_0148	-	hypothetical protein
149	 37.09	-1	185332..185544	+	70	21226251	-	MM_0149	-	hypothetical protein
150	 44.14	0	185898..186767	+	289	21226252	-	MM_0150	-	putative nucleoside-diphosphate-sugar epimerase
151	 40.38	0	189183..191069	-	628	21226253	-	MM_0151	-	hypothetical protein
152	 39.14	0	191930..193066	-	378	21226254	-	MM_0152	-	DNA integration/recombination/invertion protein
153	 37.70	-1	193892..194464	+	190	21226255	-	MM_0153	-	hypothetical protein
154	 43.12	0	194588..198226	+	1212	21226256	-	MM_0154	-	hypothetical protein
155	 43.58	0	198317..200122	-	601	21226257	-	MM_0155	-	hypothetical protein
156	 40.94	0	200894..204391	+	1165	21226258	-	MM_0156	-	type IIS restriction enzyme
157	 48.57	+1	204707..205369	+	220	21226259	-	MM_0157	-	ATP-dependent DNA helicase
158	 44.00	0	205604..205978	+	124	21226260	-	MM_0158	-	ATP-dependent DNA helicase
159	 37.48	-1	206782..207456	+	224	21226261	-	MM_0159	-	hypothetical protein
160	 46.05	0	207711..207938	-	75	21226262	-	MM_0160	-	hypothetical protein
161	 45.56	0	208063..208152	-	29	21226263	-	MM_0161	-	hypothetical protein
162	 42.50	0	208431..209816	+	461	21226264	-	MM_0162	-	hypothetical protein
163	 39.66	0	210040..212742	+	900	21226265	rad2	MM_0163	-	DNA repair protein
164	 44.56	0	212816..214864	+	682	21226266	-	MM_0164	-	ATP-dependent protease La
165	 38.32	-1	215010..215330	-	106	21226267	-	MM_0165	-	hypothetical protein
166	 46.24	0	215609..217057	+	482	21226268	-	MM_0166	-	homospermidine synthase
167	 47.44	0	217859..218950	+	363	21226269	czcD	MM_0167	-	cobalt-zinc-cadmium resistance protein
168	 45.36	0	219154..223908	-	1584	21226270	-	MM_0168	-	sensory transduction histidine kinase
169	 44.78	0	223959..226247	-	762	21226271	-	MM_0169	-	sensory transduction histidine kinase
170	 37.73	-1	226258..226917	-	219	21226272	-	MM_0170	-	transposase
171	 38.19	-1	226923..227354	-	143	21226273	-	MM_0171	-	transposase
172	 44.92	0	227390..229150	-	586	21226274	-	MM_0172	-	sensory transduction histidine kinase
173	 42.79	0	230669..231271	+	200	21226275	-	MM_0173	-	transporter
174	 43.30	0	238003..238785	+	260	21226276	mtaC	MM_0174	-	methanol corrinoid protein
175	 48.88	+1	238799..240187	+	462	21226277	mtaB	MM_0175	-	methanol:corrinoid methyltransferase
176	 48.33	0	240526..241545	-	339	21226278	mtaA	MM_0176	-	methylcobalamin:coenzyme M methyltransferase
177	 43.44	0	242044..242607	+	187	21226279	-	MM_0177	-	hypothetical protein
178	 45.44	0	243509..248644	+	1711	21226280	-	MM_0178	-	hypothetical protein
179	 45.43	0	249399..249803	+	134	21226281	-	MM_0179	-	hypothetical protein
180	 44.44	0	249857..250423	-	188	21226282	-	MM_0180	-	diamine acetyltransferase
181	 48.51	0	250785..251759	+	324	21226283	-	MM_0181	-	hypothetical protein
182	 51.20	+1	251926..253212	-	428	161485683	thiC	MM_0182	-	thiamine biosynthesis protein ThiC
183	 47.98	0	254024..256522	+	832	21226285	-	MM_0183	-	DNA topoisomerase III
184	 51.87	+1	257036..257650	-	204	21226286	-	MM_0184	-	30S ribosomal protein S3Ae
185	 44.92	0	258697..259464	+	255	21226287	-	MM_0185	-	Short chain dehydrogenase/reductase
186	 44.14	0	259621..259953	-	110	21226288	-	MM_0186	-	hypothetical protein
187	 41.35	0	260231..260542	+	103	21226289	-	MM_0187	-	nucleotidyltransferase
188	 41.67	0	260539..260886	+	115	21226290	-	MM_0188	-	nucleotidyltransferase
189	 44.55	0	260890..261219	-	109	21226291	-	MM_0189	-	hypothetical protein
190	 38.58	-1	261351..264077	+	908	21226292	-	MM_0190	-	DNA helicase II
191	 37.08	-1	264380..266008	-	542	21226293	-	MM_0191	-	transposase
192	 33.33	-2	266170..266589	+	139	21226294	-	MM_0192	-	hypothetical protein
193	 35.46	-1	266939..270094	+	1051	21226295	-	MM_0193	-	type III restriction-modification system methylation subunit
194	 41.08	0	270155..270451	+	98	21226296	-	MM_0194	-	hypothetical protein
195	 38.72	0	270598..272454	+	618	21226297	-	MM_0195	-	hypothetical protein
196	 29.67	-2	272451..273323	+	290	21226298	-	MM_0196	-	hypothetical protein
197	 32.44	-2	273320..274666	+	448	21226299	-	MM_0197	-	hypothetical protein
198	 40.15	0	275374..276738	-	454	21226300	-	MM_0198	-	ATP-dependent DNA helicase
199	 39.39	0	277046..277177	-	43	21226301	-	MM_0199	-	hypothetical protein
200	 34.81	-1	277460..277798	+	112	21226302	-	MM_0200	-	hypothetical protein
201	 40.86	0	277773..278144	+	123	21226303	-	MM_0201	-	hypothetical protein
202	 46.38	0	278172..278378	-	68	21226304	-	MM_0202	-	hypothetical protein
203	 40.49	0	278848..279867	+	339	21226305	-	MM_0203	-	hypothetical protein
204	 33.33	-2	280555..281289	+	244	21226306	-	MM_0204	-	hypothetical protein
205	 46.41	0	281636..281872	+	78	21226307	-	MM_0205	-	hypothetical protein
206	 35.28	-1	281900..282310	+	136	21226308	-	MM_0206	-	hypothetical protein
207	 44.87	0	282909..283532	-	207	21226309	-	MM_0207	-	hypothetical protein
208	 44.89	0	283525..283896	-	123	21226310	-	MM_0208	-	hypothetical protein
209	 45.32	0	284316..284774	-	152	21226311	-	MM_0209	-	hypothetical protein
210	 41.54	0	285039..285233	-	64	21226312	-	MM_0210	-	hypothetical protein
211	 44.14	0	286021..288195	+	724	21226313	-	MM_0211	-	cysteine proteinase
212	 44.17	0	288319..288558	-	79	21226314	-	MM_0212	-	hypothetical protein
213	 48.13	0	288722..290059	-	445	21226315	recJ	MM_0213	-	putative single-stranded-DNA-specific exonuclease
214	 44.37	0	290422..291807	-	461	21226316	-	MM_0214	-	hypothetical protein
215	 47.49	0	292853..293968	-	371	21226317	-	MM_0215	-	hypothetical protein
216	 43.14	0	293965..294780	-	271	21226318	-	MM_0216	-	hypothetical protein
217	 44.33	0	294833..295441	-	202	21226319	-	MM_0217	-	hypothetical protein
218	 46.23	0	295621..297837	-	738	21226320	-	MM_0218	-	hypothetical protein
219	 41.27	0	298722..299855	+	377	21226321	-	MM_0219	-	hypothetical protein
220	 38.62	0	299981..300226	-	81	21226322	-	MM_0220	-	hypothetical protein
221	 49.33	+1	300659..302383	-	574	21226323	-	MM_0221	-	Fe-S oxidoreductase
222	 52.11	+1	302788..303570	-	260	21226324	-	MM_0222	-	ribulose-1,5-biphosphate synthetase
223	 48.55	+1	304125..304814	-	229	21226325	-	MM_0223	-	hypothetical protein
224	 42.86	0	305497..305706	+	69	21226326	-	MM_0224	-	molybdenum-pterin-binding-protein
225	 47.77	0	306104..306664	+	186	21226327	-	MM_0225	-	hypothetical protein
226	 45.48	0	306684..307037	+	117	21226328	-	MM_0226	-	hypothetical protein
227	 46.48	0	307252..307464	-	70	21226329	-	MM_0227	-	hypothetical protein
228	 43.39	0	308202..308390	-	62	21226330	-	MM_0228	-	hypothetical protein
229	 44.30	0	308473..308700	-	75	21226331	-	MM_0229	-	hypothetical protein
230	 41.33	0	309343..310392	+	349	21226332	-	MM_0230	-	sodium-calcium exchanger
231	 42.11	0	311027..311698	-	223	21226333	-	MM_0231	-	hypothetical protein
232	 44.89	0	312030..312401	+	123	21226334	-	MM_0232	-	hypothetical protein
233	 45.26	0	312628..313440	-	270	21226335	-	MM_0233	-	alanyl-tRNA synthetase
234	 46.89	0	313694..315154	-	486	21226336	-	MM_0234	-	hypothetical protein
235	 45.54	0	317354..318631	-	425	21226337	-	MM_0235	-	hypothetical protein
236	 44.48	0	318992..319879	+	295	21226338	-	MM_0236	-	putative mechanosensitive ion channel
237	 41.87	0	320091..320453	-	120	21226339	-	MM_0237	-	hypothetical protein
238	 45.73	0	320656..321381	+	241	21226340	-	MM_0238	-	hypothetical protein
239	 49.45	+1	321496..322308	-	270	21226341	-	MM_0239	-	hypothetical protein
240	 45.48	0	322783..323169	-	128	21226342	-	MM_0240	-	ferredoxin
241	 47.17	0	323172..324674	-	500	21226343	-	MM_0241	-	hypothetical protein
242	 46.71	0	325004..325459	+	151	21226344	-	MM_0242	-	glycerol-3-phosphate cytidylyltransferase
243	 48.82	+1	325483..326625	-	380	21226345	-	MM_0243	-	aspartate aminotransferase
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.