IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1858	 48.31	0	2208421..2209368	-	315	21227960	-	MM_1858	-	peptide ABC transporter permease
1859	 45.34	0	2209487..2211268	-	593	21227961	-	MM_1859	-	dipeptide/oligopeptide binding protein
1860	 43.84	0	2211994..2212935	-	313	21227962	-	MM_1860	-	hypothetical protein
1861	 41.77	0	2213349..2213846	+	165	21227963	-	MM_1861	-	hypothetical protein
1862	 40.20	0	2214087..2215295	-	402	21227964	-	MM_1862	-	transporter
1863	 38.43	-1	2215312..2215782	-	156	21227965	-	MM_1863	-	MarR family transcriptional regulator
1864	 40.76	0	2216049..2216546	+	165	21227966	-	MM_1864	-	hypothetical protein
1865	 34.70	-1	2216691..2217056	+	121	21227967	-	MM_1865	-	hypothetical protein
1866	 46.78	0	2217370..2218254	-	294	21227968	-	MM_1866	-	hypothetical protein
1867	 30.39	-2	2218665..2218868	-	67	21227969	-	MM_1867	-	hypothetical protein
1868	 37.83	-1	2218883..2219149	-	88	21227970	-	MM_1868	-	hypothetical protein
1869	 46.15	0	2219327..2220676	+	449	21227971	-	MM_1869	-	hypothetical protein
1870	 47.48	0	2220642..2222825	+	727	21227972	-	MM_1870	-	hypothetical protein
1871	 47.18	0	2224583..2225167	-	194	21227973	vdcB	MM_1871	-	vanillate decarboxylase protein
1872	 46.98	0	2225167..2225547	-	126	21227974	-	MM_1872	-	hypothetical protein
1873	 47.04	0	2225553..2226770	-	405	21227975	-	MM_1873	-	phosphohydrolase
1874	 48.25	0	2226908..2227819	+	303	21227976	-	MM_1874	-	LPPG:FO 2-phospho-L-lactate transferase
1875	 43.72	0	2228317..2230443	+	708	21227977	-	MM_1875	-	hypothetical protein
1876	 47.54	0	2230892..2231461	+	189	21227978	-	MM_1876	-	adenine phosphoribosyltransferase
1877	 49.36	+1	2231427..2232449	+	340	21227979	dph2	MM_1877	-	diphthamide synthase subunit
1878	 43.43	0	2232533..2233126	+	197	21227980	-	MM_1878	-	methyltransferase
1879	 46.06	0	2233429..2234379	+	316	21227981	-	MM_1879	-	putative RNA-binding protein
1880	 39.07	0	2234475..2234753	+	92	21227982	-	MM_1880	-	DNA-directed RNA polymerase subunit L
1881	 48.58	+1	2235058..2236218	+	386	21227983	-	MM_1881	-	Sep-tRNA:Cys-tRNA synthetase
1882	 40.12	0	2236384..2236722	-	112	21227984	-	MM_1882	-	hypothetical protein
1883	 47.93	0	2236960..2237514	+	184	21227985	-	MM_1883	-	hypothetical protein
1884	 36.13	-1	2237737..2238201	-	154	21227986	-	MM_1884	-	transposase
1885	 46.87	0	2238532..2239794	-	420	21227987	-	MM_1885	-	diaminopimelate decarboxylase
1886	 36.94	-1	2240438..2241325	+	295	21227988	-	MM_1886	-	nonspecific acid phosphatase precursor
1887	 36.01	-1	2241322..2241993	+	223	21227989	-	MM_1887	-	hypothetical protein
1888	 36.83	-1	2242217..2243845	-	542	21227990	-	MM_1888	-	transposase
1889	 44.07	0	2244086..2244709	+	207	21227991	-	MM_1889	-	hypothetical protein
1890	 44.01	0	2244715..2245707	-	330	21227992	kefA	MM_1890	-	hypothetical protein
1891	 45.89	0	2245852..2247165	-	437	21227993	-	MM_1891	-	Na(+)/H(+) antiporter
1892	 50.68	+1	2247365..2248903	-	512	21227994	-	MM_1892	-	arylsulfatase
1893	 51.06	+1	2249070..2250389	-	439	21227995	syrB	MM_1893	-	putative transcriptional regulator
1894	 45.64	0	2251041..2252795	-	584	21227996	-	MM_1894	-	DNA polymerase beta
1895	 44.37	0	2252874..2254613	-	579	21227997	-	MM_1895	-	ATP-dependent DNA ligase
1896	 38.74	0	2255047..2255508	-	153	21227998	paaI	MM_1896	-	phenylacetic acid degradation protein
1897	 43.59	0	2256297..2258159	+	620	21227999	-	MM_1897	-	hypothetical protein
1898	 39.87	0	2258636..2259415	+	259	21228000	-	MM_1898	-	potassium channel protein
1899	 44.05	0	2259484..2259651	-	55	21228001	-	MM_1899	-	hypothetical protein
1900	 41.12	0	2259752..2260303	-	183	21228002	-	MM_1900	-	hypothetical protein
1901	 39.71	0	2261078..2261422	+	114	21228003	-	MM_1901	-	hypothetical protein
1902	 44.51	0	2261603..2262094	-	163	21228004	-	MM_1902	-	hypothetical protein
1903	 44.86	0	2262305..2262781	-	158	21228005	-	MM_1903	-	MarR family transcriptional regulator
1904	 43.24	0	2263194..2263637	+	147	21228006	-	MM_1904	-	hypothetical protein
1905	 40.76	0	2263903..2264373	-	156	21228007	-	MM_1905	-	hypothetical protein
1906	 46.93	0	2264620..2264994	+	124	21228008	-	MM_1906	-	hypothetical protein
1907	 45.49	0	2265180..2265722	-	180	21228009	-	MM_1907	-	isochorismatase
1908	 47.06	0	2266151..2266558	+	135	21228010	-	MM_1908	-	hypothetical protein
1909	 45.78	0	2266870..2268885	+	671	21228011	kefC	MM_1909	-	glutathione-regulated potassium-efflux system protein
1910	 44.59	0	2268889..2269572	+	227	21228012	-	MM_1910	-	Maf protein
1911	 45.15	0	2269793..2271214	+	473	21228013	-	MM_1911	-	cysteinyl-tRNA synthetase
1912	 41.48	0	2271335..2271739	+	134	21228014	-	MM_1912	-	hypothetical protein
1913	 48.26	0	2271899..2272816	+	305	21228015	-	MM_1913	-	ATP-dependent protease La
1914	 47.32	0	2273206..2274063	+	285	21228016	-	MM_1914	-	hypothetical protein
1915	 44.83	0	2274419..2276245	+	608	21228017	-	MM_1915	-	sensory transduction histidine kinase
1916	 46.61	0	2276788..2278323	+	511	21228018	lysS	MM_1916	-	lysyl-tRNA synthetase
1917	 50.09	+1	2278643..2281537	+	964	21228019	-	MM_1917	-	ATP-dependent RNA helicase
1918	 33.26	-2	2281765..2284464	-	899	21228020	-	MM_1918	-	hypothetical protein
1919	 44.85	0	2284856..2285020	+	54	21228021	-	MM_1919	-	hypothetical protein
1920	 39.18	0	2285335..2285625	+	96	21228022	-	MM_1920	-	nucleotidyltransferase
1921	 36.87	-1	2285708..2286046	-	112	21228023	-	MM_1921	-	hypothetical protein
1922	 39.84	0	2286069..2286575	-	168	21228024	-	MM_1922	-	hypothetical protein
1923	 44.13	0	2287321..2287533	+	70	21228025	-	MM_1923	-	hypothetical protein
1924	 42.74	0	2287530..2287763	+	77	21228026	-	MM_1924	-	hypothetical protein
1925	 37.40	-1	2288010..2288402	-	130	21228027	-	MM_1925	-	hypothetical protein
1926	 42.45	0	2288841..2289224	-	127	21228028	-	MM_1926	-	hypothetical protein
1927	 42.46	0	2290590..2293175	+	861	21228029	-	MM_1927	-	cell surface glycoprotein
1928	 40.45	0	2293202..2293735	-	177	21228030	-	MM_1928	-	phosphinothricin acetyltransferase
1929	 44.85	0	2294319..2295377	+	352	21228031	-	MM_1929	-	hypothetical protein
1930	 35.58	-1	2295461..2296705	-	414	21228032	-	MM_1930	-	transposase
1931	 42.14	0	2298295..2300019	+	574	21228033	-	MM_1931	-	sensory transduction protein kinase
1932	 48.05	0	2300198..2301223	+	341	21228034	mtbA	MM_1932	-	methylcobalamin:coenzyme M methyltransferase
1933	 43.39	0	2301260..2302174	-	304	21228035	-	MM_1933	-	integral membrane protein
1934	 43.75	0	2302331..2303050	+	239	21228036	-	MM_1934	-	hypothetical protein
1935	 43.79	0	2303151..2304011	-	286	21228037	-	MM_1935	-	acetyltransferase
1936	 45.51	0	2304088..2305212	-	374	21228038	-	MM_1936	-	hypothetical protein
1937	 42.04	0	2305475..2305807	-	110	21228039	-	MM_1937	-	hypothetical protein
1938	 43.75	0	2306509..2306892	+	127	21228040	-	MM_1938	-	hypothetical protein
1939	 49.36	+1	2307683..2308537	+	284	21228041	-	MM_1939	-	glutamine-binding protein
1940	 47.56	0	2308958..2309653	+	231	21228042	glnP	MM_1940	-	glutamine transporter, permease protein
1941	 46.75	0	2309637..2310359	+	240	21228043	glnQ	MM_1941	-	glutamine transporter, ATP-binding protein
1942	 46.09	0	2310451..2311344	+	297	21228044	ubiA	MM_1942	-	prenyltransferase
1943	 44.58	0	2311637..2312392	+	251	21228045	-	MM_1943	-	hypothetical protein
1944	 44.34	0	2312459..2313439	+	326	21228046	-	MM_1944	-	transporter
1945	 45.68	0	2313528..2313851	-	107	21228047	-	MM_1945	-	hypothetical protein
1946	 44.41	0	2314016..2315143	-	375	21228048	-	MM_1946	-	glycosyltransferase
1947	 46.14	0	2315188..2316132	-	314	21228049	-	MM_1947	-	integral membrane protein
1948	 44.59	0	2316651..2317778	+	375	21228050	-	MM_1948	-	aldo/keto reductase family oxidoreductase
1949	 45.07	0	2318101..2318901	-	266	21228051	-	MM_1949	-	methyltransferase
1950	 45.85	0	2319473..2321605	+	710	21228052	-	MM_1950	-	catalase
1951	 40.40	0	2322132..2322329	-	65	21228053	-	MM_1951	-	hypothetical protein
1952	 44.64	0	2322995..2323516	+	173	21228054	czcD	MM_1952	-	cobalt-zinc-cadmium resistance protein
1953	 49.21	+1	2323473..2324171	+	232	21228055	czcD	MM_1953	-	cobalt-zinc-cadmium resistance protein
1954	 47.73	0	2324243..2324902	-	219	21228056	-	MM_1954	-	NifU protein
1955	 47.88	0	2324969..2326123	-	384	21228057	-	MM_1955	-	cysteine desulfurase NifS
1956	 45.77	0	2326429..2326854	-	141	21228058	-	MM_1956	-	hypothetical protein
1957	 46.05	0	2326868..2327095	-	75	21228059	-	MM_1957	-	transcriptional regulator
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.