IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1401	 44.02	0	1683533..1684402	+	289	21227503	-	MM_1401	-	hypothetical protein
1402	 40.19	0	1684408..1685034	+	208	21227504	-	MM_1402	-	phosphatidylserine decarboxylase
1403	 47.45	0	1685037..1685780	+	247	21227505	-	MM_1403	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1404	 41.46	0	1685842..1686198	+	118	21227506	-	MM_1404	-	hypothetical protein
1405	 45.44	0	1686325..1687431	-	368	21227507	-	MM_1405	-	histidinol-phosphate aminotransferase
1406	 49.24	+1	1687406..1688593	-	395	21227508	-	MM_1406	-	acetylornithine aminotransferase
1407	 46.74	0	1689234..1690307	-	357	21227509	-	MM_1407	-	hypothetical protein
1408	 45.99	0	1690706..1691179	-	157	21227510	-	MM_1408	-	archaeosine tRNA-ribosyltransferase
1409	 41.76	0	1691476..1692591	+	371	21227511	-	MM_1409	-	hypothetical protein
1410	 41.71	0	1692725..1693774	+	349	21227512	-	MM_1410	-	hypothetical protein
1411	 39.58	0	1694174..1695310	+	378	21227513	-	MM_1411	-	hypothetical protein
1412	 44.97	0	1695362..1695928	+	188	21227514	-	MM_1412	-	hypothetical protein
1413	 36.30	-1	1695956..1696258	-	100	21227515	-	MM_1413	-	hypothetical protein
1414	 41.39	0	1696967..1697425	+	152	21227516	-	MM_1414	-	hypothetical protein
1415	 42.40	0	1697422..1697796	+	124	21227517	-	MM_1415	-	hypothetical protein
1416	 47.20	0	1697977..1699029	-	350	21227518	-	MM_1416	-	phosphoribosylaminoimidazole synthetase
1417	 47.08	0	1699001..1700440	-	479	21227519	-	MM_1417	-	aspartate kinase
1418	 46.57	0	1700863..1702056	+	397	161485676	-	MM_1418	-	cofactor-independent phosphoglycerate mutase
1419	 45.45	0	1702391..1702852	+	153	21227521	-	MM_1419	-	small heat shock protein
1420	 39.76	0	1703105..1703524	-	139	21227522	-	MM_1420	-	hypothetical protein
1421	 44.18	0	1703918..1704682	+	254	21227523	-	MM_1421	-	F420-0--gamma-glutamyl ligase
1422	 44.75	0	1704889..1705212	-	107	21227524	-	MM_1422	-	hypothetical protein
1423	 45.89	0	1705264..1705725	-	153	21227525	-	MM_1423	-	dCMP deaminase
1424	 45.25	0	1706127..1707032	+	301	21227526	-	MM_1424	-	preprotein translocase subunit SecF
1425	 47.74	0	1707029..1708729	+	566	21227527	secD	MM_1425	-	preprotein translocase subunit SecD
1426	 46.59	0	1708793..1709818	+	341	21227528	-	MM_1426	-	replication factor C small subunit 2
1427	 39.62	0	1710575..1710940	+	121	21227529	-	MM_1427	-	hypothetical protein
1428	 33.16	-2	1710971..1711546	+	191	21227530	-	MM_1428	-	hypothetical protein
1429	 28.65	-2	1711929..1712312	-	127	21227531	-	MM_1429	-	transposase
1430	 35.34	-1	1712392..1712988	-	198	21227532	-	MM_1430	-	transposase
1431	 35.72	-1	1712970..1713638	-	222	21227533	-	MM_1431	-	transposase
1432	 30.88	-2	1714053..1714337	-	94	21227534	-	MM_1432	-	hypothetical protein
1433	 45.15	0	1715089..1715325	-	78	21227535	-	MM_1433	-	hypothetical protein
1434	 44.44	0	1715338..1715607	-	89	21227536	mtmP	MM_1434	-	monomethylamine permease
1435	 48.19	0	1715594..1717000	-	468	21227537	mtmP	MM_1435	-	monomethylamine permease
1436	 48.27	0	1717292..1718014	-	240	21227538	mtmB	MM_1436	-	monomethylamine:corrinoid methyltransferase
1437	 48.51	0	1718063..1718668	-	201	21227539	mtmB	MM_1437	-	monomethylamine:corrinoid methyltransferase
1438	 47.46	0	1718688..1719494	-	268	21227540	mtmC	MM_1438	-	monomethylamine corrinoid protein
1439	 47.65	0	1720296..1721315	-	339	21227541	mtbA	MM_1439	-	methylcobalamin:coenzyme M methyltransferase
1440	 47.81	0	1721763..1723385	+	540	21227542	-	MM_1440	-	hypothetical protein
1441	 39.61	0	1723759..1724268	+	169	161485675	-	MM_1441	-	inorganic pyrophosphatase
1442	 45.16	0	1724409..1725203	-	264	21227544	-	MM_1442	-	hypothetical protein
1443	 45.61	0	1725241..1726356	-	371	21227545	-	MM_1443	-	hypothetical protein
1444	 45.33	0	1726334..1727383	-	349	21227546	-	MM_1444	-	biotin synthetase
1445	 47.25	0	1727617..1728981	-	454	21227547	pylS	MM_1445	-	pyrolysyl-tRNA synthetase
1446	 46.49	0	1729060..1729287	+	75	21227548	-	MM_1446	-	hypothetical protein
1447	 45.88	0	1729571..1730311	-	246	21227549	-	MM_1447	-	hypothetical protein
1448	 50.19	+1	1730733..1731266	+	177	21227550	-	MM_1448	-	hypothetical protein
1449	 49.87	+1	1731432..1731824	+	130	21227551	-	MM_1449	-	hypothetical protein
1450	 44.14	0	1732012..1732992	+	326	21227552	-	MM_1450	-	Fe-S oxidoreductase
1451	 44.52	0	1733048..1733485	-	145	21227553	-	MM_1451	-	universal stress protein
1452	 42.49	0	1733532..1734503	-	323	21227554	-	MM_1452	-	universal stress protein
1453	 45.92	0	1734809..1735261	-	150	21227555	-	MM_1453	-	universal stress protein
1454	 43.56	0	1735378..1735866	-	162	21227556	-	MM_1454	-	universal stress protein
1455	 46.36	0	1735933..1736385	-	150	21227557	-	MM_1455	-	universal stress protein
1456	 44.65	0	1736503..1736997	-	164	21227558	-	MM_1456	-	universal stress protein
1457	 44.25	0	1737695..1738372	-	225	21227559	-	MM_1457	-	hypothetical protein
1458	 47.69	0	1738436..1739710	-	424	21227560	-	MM_1458	-	hypothetical protein
1459	 43.86	0	1739916..1740143	+	75	21227561	-	MM_1459	-	hypothetical protein
1460	 35.86	-1	1740462..1740698	+	78	21227562	-	MM_1460	-	hypothetical protein
1461	 52.27	+1	1741408..1744227	+	939	21227563	-	MM_1461	-	cation-transporting ATPase
1462	 32.78	-2	1744351..1744896	-	181	21227564	-	MM_1462	-	hypothetical protein
1463	 47.33	0	1745132..1747267	+	711	21227565	-	MM_1463	-	copper-exporting ATPase
1464	 36.25	-1	1747558..1747797	-	79	21227566	-	MM_1464	-	hypothetical protein
1465	 43.52	0	1748079..1749413	-	444	21227567	-	MM_1465	-	hypothetical protein
1466	 36.32	-1	1749758..1750225	+	155	21227568	-	MM_1466	-	hypothetical protein
1467	 30.91	-2	1750399..1750851	+	150	21227569	-	MM_1467	-	hypothetical protein
1468	 43.64	0	1750899..1751228	-	109	21227570	-	MM_1468	-	hypothetical protein
1469	 48.33	0	1751377..1752243	+	288	21227571	-	MM_1469	-	hypothetical protein
1470	 49.53	+1	1752535..1754022	-	495	21227572	pheS	MM_1470	-	phenylalanyl-tRNA synthetase subunit alpha
1471	 47.65	0	1754232..1755719	-	495	21227573	-	MM_1471	-	tryptophanyl-tRNA synthetase
1472	 36.79	-1	1755935..1756339	+	134	21227574	-	MM_1472	-	putative nucleotidyltransferase
1473	 42.60	0	1756311..1756763	+	150	21227575	-	MM_1473	-	hypothetical protein
1474	 45.60	0	1756839..1758053	-	404	21227576	-	MM_1474	-	metallo cofactor biosynthesis protein
1475	 48.44	0	1758505..1759113	-	202	21227577	-	MM_1475	-	translation initiation factor IF-2 subunit beta
1476	 50.00	+1	1759152..1759673	-	173	21227578	rpl10e	MM_1476	-	50S ribosomal protein L10e
1477	 48.93	+1	1759990..1761111	-	373	21227579	-	MM_1477	-	pyruvate formate-lyase activating enzyme
1478	 43.70	0	1761355..1761894	+	179	21227580	-	MM_1478	-	molybdenum cofactor biosynthesis protein B
1479	 49.45	+1	1762442..1765711	+	1089	21227581	-	MM_1479	-	SWF/SNF family helicase
1480	 48.24	0	1765713..1766651	+	312	21227582	-	MM_1480	-	hypothetical protein
1481	 49.25	+1	1766712..1766912	-	66	21227583	-	MM_1481	-	Iron-dependent repressor
1482	 50.17	+1	1767043..1767339	-	98	21227584	-	MM_1482	-	hypothetical protein
1483	 55.11	+2	1767234..1767458	-	74	21227585	-	MM_1483	-	ferrous iron transport protein B
1484	 41.10	0	1767822..1768619	-	265	21227586	-	MM_1484	-	hypothetical protein
1485	 42.53	0	1769072..1769332	+	86	21227587	-	MM_1485	-	hypothetical protein
1486	 48.40	0	1769820..1772600	+	926	21227588	alaS	MM_1486	-	alanyl-tRNA synthetase
1487	 46.34	0	1772737..1773882	-	381	21227589	-	MM_1487	-	methyltransferase
1488	 40.45	0	1773948..1774916	-	322	21227590	-	MM_1488	-	hypothetical protein
1489	 48.58	+1	1775332..1776459	-	375	21227591	-	MM_1489	-	3-isopropylmalate dehydrogenase
1490	 47.65	0	1776555..1777043	-	162	21227592	leuD	MM_1490	-	3-isopropylmalate dehydratase small subunit
1491	 48.88	+1	1777268..1778611	-	447	21227593	-	MM_1491	-	putative nucleotidyltransferase
1492	 38.82	0	1779206..1780117	+	303	21227594	-	MM_1492	-	hypothetical protein
1493	 46.50	0	1780598..1781668	-	356	21227595	purP	MM_1493	-	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase
1494	 46.60	0	1781868..1782824	+	318	21227596	-	MM_1494	-	transcriptional regulator
1495	 44.94	0	1782836..1783645	+	269	21227597	truA	MM_1495	-	tRNA pseudouridine synthase A
1496	 47.76	0	1783791..1784837	-	348	21227598	-	MM_1496	-	putative methyltransferase
1497	 47.57	0	1785338..1785625	-	95	21227599	-	MM_1497	-	hypothetical protein
1498	 40.18	0	1785688..1786476	-	262	21227600	-	MM_1498	-	hypothetical protein
1499	 45.68	0	1786558..1787448	-	296	21227601	-	MM_1499	-	methionine aminopeptidase
1500	 44.59	0	1787666..1788847	-	393	21227602	-	MM_1500	-	Xaa-Pro aminopeptidase
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.