IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.57   STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1366	 44.95	0	1635231..1636022	-	263	21227468	-	MM_1366	-	ribonucleoside-triphosphate reductase activating enzyme
1367	 47.80	0	1636066..1638450	-	794	21227469	-	MM_1367	-	anaerobic ribonucleoside-triphosphate reductase
1368	 41.96	0	1638530..1638784	-	84	21227470	-	MM_1368	-	glutaredoxin-like protein
1369	 45.52	0	1639456..1640202	+	248	21227471	radB	MM_1369	-	DNA repair and recombination protein RadB
1370	 47.14	0	1640308..1641408	-	366	21227472	-	MM_1370	-	myo-inositol-1-phosphate synthase
1371	 48.40	0	1641948..1642976	+	342	21227473	-	MM_1371	-	translation initiation factor IF-2B subunit alpha
1372	 47.62	0	1643373..1643540	+	55	21227474	-	MM_1372	-	preprotein translocase subunit SecG
1373	 44.48	0	1643541..1644545	+	334	21227475	-	MM_1373	-	hydrolase
1374	 47.79	0	1644599..1646728	+	709	21227476	mutS	MM_1374	-	DNA mismatch repair protein
1375	 46.68	0	1647406..1649592	+	728	21227477	-	MM_1375	-	polyphosphate kinase
1376	 46.26	0	1649935..1651566	+	543	21227478	-	MM_1376	-	exopolyphosphatase
1377	 43.57	0	1651678..1654266	-	862	21227479	-	MM_1377	-	hypothetical protein
1378	 43.85	0	1655076..1656197	+	373	21227480	cdc6	MM_1378	-	cell division control protein 6
1379	 51.27	+1	1656363..1658018	-	551	21227481	-	MM_1379	-	thermosome, alpha subunit
1380	 44.30	0	1658969..1660390	+	473	21227482	dnaK	MM_1380	-	chaperone protein
1381	 44.91	0	1660567..1661283	+	238	21227483	dnaJ	MM_1381	-	chaperone protein
1382	 42.35	0	1661336..1662067	-	243	21227484	-	MM_1382	-	hypothetical protein
1383	 47.78	0	1662114..1663733	-	539	21227485	-	MM_1383	-	O-phosphoseryl-tRNA synthetase
1384	 44.23	0	1664097..1664729	-	210	21227486	-	MM_1384	-	superfamily I DNA/RNA helicase
1385	 41.84	0	1665560..1665841	-	93	21227487	-	MM_1385	-	hypothetical protein
1386	 46.99	0	1666078..1666692	+	204	21227488	-	MM_1386	-	hypothetical protein
1387	 45.70	0	1666819..1669413	-	864	21227489	-	MM_1387	-	Hef nuclease
1388	 48.65	+1	1669582..1671540	-	652	21227490	-	MM_1388	-	glycyl-tRNA synthetase
1389	 44.48	0	1671835..1672659	-	274	21227491	-	MM_1389	-	hypothetical protein
1390	 45.85	0	1673998..1674588	-	196	21227492	syrB	MM_1390	-	putative transcriptional regulator
1391	 48.26	0	1674930..1675733	+	267	21227493	surE	MM_1391	-	stationary phase survival protein SurE
1392	 38.27	-1	1675939..1676100	-	53	21227494	-	MM_1392	-	hypothetical protein
1393	 45.47	0	1676170..1677174	-	334	21227495	moaA	MM_1393	-	molybdenum cofactor biosynthesis protein A
1394	 47.23	0	1677516..1678868	+	450	21227496	-	MM_1394	-	cobyrinic acid a,c-diamide synthase
1395	 33.33	-2	1679255..1679719	+	154	21227497	-	MM_1395	-	hypothetical protein
1396	 44.29	0	1679809..1680921	-	370	21227498	-	MM_1396	-	DNA primase large subunit
1397	 46.75	0	1680929..1681666	-	245	21227499	-	MM_1397	-	DNA polymerase sliding clamp
1398	 44.44	0	1681991..1682314	-	107	21227500	-	MM_1398	-	DNA-directed RNA polymerase subunit M
1399	 42.09	0	1682289..1682699	-	136	21227501	-	MM_1399	-	MutT-like protein
1400	 30.05	-2	1683287..1683499	+	70	21227502	-	MM_1400	-	hypothetical protein
1401	 44.02	0	1683533..1684402	+	289	21227503	-	MM_1401	-	hypothetical protein
1402	 40.19	0	1684408..1685034	+	208	21227504	-	MM_1402	-	phosphatidylserine decarboxylase
1403	 47.45	0	1685037..1685780	+	247	21227505	-	MM_1403	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
1404	 41.46	0	1685842..1686198	+	118	21227506	-	MM_1404	-	hypothetical protein
1405	 45.44	0	1686325..1687431	-	368	21227507	-	MM_1405	-	histidinol-phosphate aminotransferase
1406	 49.24	+1	1687406..1688593	-	395	21227508	-	MM_1406	-	acetylornithine aminotransferase
1407	 46.74	0	1689234..1690307	-	357	21227509	-	MM_1407	-	hypothetical protein
1408	 45.99	0	1690706..1691179	-	157	21227510	-	MM_1408	-	archaeosine tRNA-ribosyltransferase
1409	 41.76	0	1691476..1692591	+	371	21227511	-	MM_1409	-	hypothetical protein
1410	 41.71	0	1692725..1693774	+	349	21227512	-	MM_1410	-	hypothetical protein
1411	 39.58	0	1694174..1695310	+	378	21227513	-	MM_1411	-	hypothetical protein
1412	 44.97	0	1695362..1695928	+	188	21227514	-	MM_1412	-	hypothetical protein
1413	 36.30	-1	1695956..1696258	-	100	21227515	-	MM_1413	-	hypothetical protein
1414	 41.39	0	1696967..1697425	+	152	21227516	-	MM_1414	-	hypothetical protein
1415	 42.40	0	1697422..1697796	+	124	21227517	-	MM_1415	-	hypothetical protein
1416	 47.20	0	1697977..1699029	-	350	21227518	-	MM_1416	-	phosphoribosylaminoimidazole synthetase
1417	 47.08	0	1699001..1700440	-	479	21227519	-	MM_1417	-	aspartate kinase
1418	 46.57	0	1700863..1702056	+	397	161485676	-	MM_1418	-	cofactor-independent phosphoglycerate mutase
1419	 45.45	0	1702391..1702852	+	153	21227521	-	MM_1419	-	small heat shock protein
1420	 39.76	0	1703105..1703524	-	139	21227522	-	MM_1420	-	hypothetical protein
1421	 44.18	0	1703918..1704682	+	254	21227523	-	MM_1421	-	F420-0--gamma-glutamyl ligase
1422	 44.75	0	1704889..1705212	-	107	21227524	-	MM_1422	-	hypothetical protein
1423	 45.89	0	1705264..1705725	-	153	21227525	-	MM_1423	-	dCMP deaminase
1424	 45.25	0	1706127..1707032	+	301	21227526	-	MM_1424	-	preprotein translocase subunit SecF
1425	 47.74	0	1707029..1708729	+	566	21227527	secD	MM_1425	-	preprotein translocase subunit SecD
1426	 46.59	0	1708793..1709818	+	341	21227528	-	MM_1426	-	replication factor C small subunit 2
1427	 39.62	0	1710575..1710940	+	121	21227529	-	MM_1427	-	hypothetical protein
1428	 33.16	-2	1710971..1711546	+	191	21227530	-	MM_1428	-	hypothetical protein
1429	 28.65	-2	1711929..1712312	-	127	21227531	-	MM_1429	-	transposase
1430	 35.34	-1	1712392..1712988	-	198	21227532	-	MM_1430	-	transposase
1431	 35.72	-1	1712970..1713638	-	222	21227533	-	MM_1431	-	transposase
1432	 30.88	-2	1714053..1714337	-	94	21227534	-	MM_1432	-	hypothetical protein
1433	 45.15	0	1715089..1715325	-	78	21227535	-	MM_1433	-	hypothetical protein
1434	 44.44	0	1715338..1715607	-	89	21227536	mtmP	MM_1434	-	monomethylamine permease
1435	 48.19	0	1715594..1717000	-	468	21227537	mtmP	MM_1435	-	monomethylamine permease
1436	 48.27	0	1717292..1718014	-	240	21227538	mtmB	MM_1436	-	monomethylamine:corrinoid methyltransferase
1437	 48.51	0	1718063..1718668	-	201	21227539	mtmB	MM_1437	-	monomethylamine:corrinoid methyltransferase
1438	 47.46	0	1718688..1719494	-	268	21227540	mtmC	MM_1438	-	monomethylamine corrinoid protein
1439	 47.65	0	1720296..1721315	-	339	21227541	mtbA	MM_1439	-	methylcobalamin:coenzyme M methyltransferase
1440	 47.81	0	1721763..1723385	+	540	21227542	-	MM_1440	-	hypothetical protein
1441	 39.61	0	1723759..1724268	+	169	161485675	-	MM_1441	-	inorganic pyrophosphatase
1442	 45.16	0	1724409..1725203	-	264	21227544	-	MM_1442	-	hypothetical protein
1443	 45.61	0	1725241..1726356	-	371	21227545	-	MM_1443	-	hypothetical protein
1444	 45.33	0	1726334..1727383	-	349	21227546	-	MM_1444	-	biotin synthetase
1445	 47.25	0	1727617..1728981	-	454	21227547	pylS	MM_1445	-	pyrolysyl-tRNA synthetase
1446	 46.49	0	1729060..1729287	+	75	21227548	-	MM_1446	-	hypothetical protein
1447	 45.88	0	1729571..1730311	-	246	21227549	-	MM_1447	-	hypothetical protein
1448	 50.19	+1	1730733..1731266	+	177	21227550	-	MM_1448	-	hypothetical protein
1449	 49.87	+1	1731432..1731824	+	130	21227551	-	MM_1449	-	hypothetical protein
1450	 44.14	0	1732012..1732992	+	326	21227552	-	MM_1450	-	Fe-S oxidoreductase
1451	 44.52	0	1733048..1733485	-	145	21227553	-	MM_1451	-	universal stress protein
1452	 42.49	0	1733532..1734503	-	323	21227554	-	MM_1452	-	universal stress protein
1453	 45.92	0	1734809..1735261	-	150	21227555	-	MM_1453	-	universal stress protein
1454	 43.56	0	1735378..1735866	-	162	21227556	-	MM_1454	-	universal stress protein
1455	 46.36	0	1735933..1736385	-	150	21227557	-	MM_1455	-	universal stress protein
1456	 44.65	0	1736503..1736997	-	164	21227558	-	MM_1456	-	universal stress protein
1457	 44.25	0	1737695..1738372	-	225	21227559	-	MM_1457	-	hypothetical protein
1458	 47.69	0	1738436..1739710	-	424	21227560	-	MM_1458	-	hypothetical protein
1459	 43.86	0	1739916..1740143	+	75	21227561	-	MM_1459	-	hypothetical protein
1460	 35.86	-1	1740462..1740698	+	78	21227562	-	MM_1460	-	hypothetical protein
1461	 52.27	+1	1741408..1744227	+	939	21227563	-	MM_1461	-	cation-transporting ATPase
1462	 32.78	-2	1744351..1744896	-	181	21227564	-	MM_1462	-	hypothetical protein
1463	 47.33	0	1745132..1747267	+	711	21227565	-	MM_1463	-	copper-exporting ATPase
1464	 36.25	-1	1747558..1747797	-	79	21227566	-	MM_1464	-	hypothetical protein
1465	 43.52	0	1748079..1749413	-	444	21227567	-	MM_1465	-	hypothetical protein
43.57	MEAN

4.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.