IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
921	 34.28	0	873560..874612	+	350	159905317	-	MmarC6_0932	-	hypothetical protein
922	 32.32	0	874748..875239	+	163	159905318	-	MmarC6_0933	-	hypothetical protein
923	 30.72	0	875254..876057	+	267	159905319	-	MmarC6_0934	-	hypothetical protein
924	 28.12	-1	876068..877237	+	389	159905320	-	MmarC6_0935	-	tRNA pseudouridine synthase D
925	 36.03	0	877249..878694	-	481	159905321	-	MmarC6_0936	-	argininosuccinate lyase
926	 27.92	-1	878723..879184	-	153	159905322	-	MmarC6_0937	-	CoA-binding domain-containing protein
927	 34.46	0	879254..880321	+	355	159905323	-	MmarC6_0938	-	DNA-cytosine methyltransferase
928	 31.46	0	880366..880791	+	141	159905324	-	MmarC6_0939	-	hypothetical protein
929	 32.52	0	880811..881920	+	369	159905325	-	MmarC6_0940	-	DNA primase, large subunit
930	 35.10	0	881931..883685	+	584	159905326	-	MmarC6_0941	-	DNA polymerase II small subunit
931	 38.00	+1	883699..884469	-	256	159905327	-	MmarC6_0942	-	geranylgeranylglyceryl phosphate synthase-like protein
932	 36.19	0	884889..885974	-	361	159905328	-	MmarC6_0943	-	3-dehydroquinate synthase
933	 29.76	-1	886103..887671	+	522	159905329	-	MmarC6_0944	-	hypothetical protein
934	 35.45	0	887765..888661	+	298	159905330	-	MmarC6_0945	-	protein of unknown function RIO1
935	 39.56	+1	888700..889791	+	363	159905331	-	MmarC6_0946	-	2-oxoglutarate ferredoxin oxidoreductase subunit alpha
936	 35.40	0	889827..890891	-	354	159905332	-	MmarC6_0947	-	L-seryl-tRNA selenium transferase
937	 35.84	0	890923..891201	-	92	159905333	-	MmarC6_0948	-	hypothetical protein
938	 37.12	0	901312..902130	-	272	159905334	-	MmarC6_0949	-	imidazoleglycerol phosphate synthase, cyclase subunit
939	 33.71	0	902161..902955	-	264	159905335	-	MmarC6_0950	-	hypothetical protein
940	 33.39	0	902967..904757	-	596	159905336	-	MmarC6_0951	-	hypothetical protein
941	 32.35	0	904941..907595	+	884	159905337	-	MmarC6_0952	-	hypothetical protein
942	 36.16	0	907770..908087	+	105	159905338	-	MmarC6_0953	-	hypothetical protein
943	 30.72	0	908143..909174	+	343	159905339	-	MmarC6_0954	-	methyltransferase type 12
944	 37.72	0	909227..910252	+	341	159905340	-	MmarC6_0955	-	H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein
945	 35.02	0	910262..910735	+	157	159905341	-	MmarC6_0956	-	small GTP-binding protein
946	 35.94	0	910749..911093	+	114	159905342	-	MmarC6_0957	-	roadblock/LC7 family protein
947	 28.50	-1	911264..912214	-	316	159905343	-	MmarC6_0958	-	hypothetical protein
948	 33.89	0	912343..913233	+	296	159905344	-	MmarC6_0959	-	LysR family transcriptional regulator
949	 34.79	0	913309..914061	+	250	159905345	-	MmarC6_0960	-	proliferating cell nuclear antigen PcnA
950	 29.76	-1	914096..914683	+	195	159905346	-	MmarC6_0961	-	hypothetical protein
951	 37.94	+1	914640..914921	+	93	159905347	-	MmarC6_0962	-	50S ribosomal protein L44e
952	 34.41	0	914944..915129	+	61	159905348	-	MmarC6_0963	-	30S ribosomal protein S27e
953	 38.72	+1	915243..916040	+	265	159905349	-	MmarC6_0964	-	translation initiation factor IF-2 subunit alpha
954	 33.33	0	916049..916204	+	51	159905350	-	MmarC6_0965	-	H/ACA RNA-protein complex component Nop10p
955	 32.13	0	916210..916875	+	221	159905351	-	MmarC6_0966	-	creatininase
956	 37.28	0	916885..917340	+	151	159905352	-	MmarC6_0967	-	hypothetical protein
957	 27.20	-1	917337..918233	-	298	159905353	-	MmarC6_0968	-	hypothetical protein
958	 37.18	0	918439..919452	-	337	159905354	-	MmarC6_0969	-	homoserine dehydrogenase
959	 35.40	0	919464..919946	-	160	159905355	-	MmarC6_0970	-	amino acid-binding ACT domain-containing protein
960	 39.83	+1	920105..921706	-	533	159905356	-	MmarC6_0971	-	SSS family solute/sodium (Na+) symporter
961	 37.50	0	921707..921898	-	63	159905357	-	MmarC6_0972	-	hypothetical protein
962	 32.96	0	922229..922765	-	178	159905358	-	MmarC6_0973	-	hypothetical protein
963	 42.69	+2	923476..925452	+	658	159905359	-	MmarC6_0974	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
964	 41.48	+1	925641..926045	+	134	159905360	-	MmarC6_0975	-	methyl-viologen-reducing hydrogenase delta subunit
965	 41.06	+1	926145..927011	+	288	159905361	-	MmarC6_0976	-	NADH ubiquinone oxidoreductase 20 kDa subunit
966	 40.49	+1	927053..928309	+	418	159905362	-	MmarC6_0977	-	nickel-dependent hydrogenase large subunit
967	 34.81	0	928324..928458	+	44	159905363	-	MmarC6_0978	-	F420 non-reducing hydrogenase subunit
968	 40.49	+1	928548..929735	+	395	159905364	-	MmarC6_0979	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
969	 41.61	+2	929764..931068	+	434	159905365	-	MmarC6_0980	-	molybdopterin oxidoreductase
970	 28.10	-1	931282..931950	+	222	159905366	-	MmarC6_0981	-	hisA/hisF family protein
971	 34.77	0	931952..932509	+	185	159905367	-	MmarC6_0982	-	thiamine pyrophosphate binding domain-containing protein
972	 27.19	-1	932522..933205	-	227	159905368	-	MmarC6_0983	-	hypothetical protein
973	 34.78	0	933216..933422	-	68	159905369	-	MmarC6_0984	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
974	 36.03	0	933439..934440	-	333	159905370	-	MmarC6_0985	-	H/ACA RNA-protein complex component Cbf5p
975	 25.76	-2	934457..934654	-	65	159905371	-	MmarC6_0986	-	hypothetical protein
976	 40.00	+1	935072..935296	+	74	159905372	-	MmarC6_0987	-	hypothetical protein
977	 32.31	0	935312..935995	+	227	159905373	-	MmarC6_0988	-	metallophosphoesterase
978	 28.50	-1	935997..936638	-	213	159905374	-	MmarC6_0989	-	hypothetical protein
979	 34.26	0	936771..938174	+	467	159905375	-	MmarC6_0990	-	phosphoesterase domain-containing protein
980	 31.31	0	938208..939494	+	428	159905376	-	MmarC6_0991	-	hypothetical protein
981	 32.89	0	939481..941280	-	599	159905377	-	MmarC6_0992	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
982	 36.76	0	941391..941828	+	145	159905378	-	MmarC6_0993	-	hypothetical protein
983	 28.59	-1	941834..942655	-	273	159905379	-	MmarC6_0994	-	xylose isomerase domain-containing protein
984	 28.32	-1	942728..943564	+	278	159905380	-	MmarC6_0995	-	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase
985	 36.97	0	943573..945249	-	558	159905381	-	MmarC6_0996	-	flagellar assembly protein J
986	 37.29	0	945261..946901	-	546	159905382	-	MmarC6_0997	-	type II secretion system protein E
987	 33.33	0	946911..947603	-	230	159905383	-	MmarC6_0998	-	flagellar accessory protein FlaH
988	 36.42	0	947619..948071	-	150	159905384	-	MmarC6_0999	-	flagellar protein G
989	 33.58	0	948117..948524	-	135	159905385	-	MmarC6_1000	-	flagellar protein F
990	 33.82	0	948514..948921	-	135	159905386	-	MmarC6_1001	-	flagella protein
991	 33.54	0	948949..949914	-	321	159905387	-	MmarC6_1002	-	flagella protein
992	 36.54	0	949904..950464	-	186	159905388	-	MmarC6_1003	-	flagella accessory C family protein
993	 37.14	0	950475..951104	-	209	159905389	-	MmarC6_1004	-	flagellin
994	 38.14	+1	951142..951807	-	221	159905390	-	MmarC6_1005	-	flagellin
995	 37.99	+1	951847..952512	-	221	159905391	-	MmarC6_1006	-	flagellin
996	 39.65	+1	952552..953532	-	326	159905392	-	MmarC6_1007	-	flagellin
997	 30.24	0	953837..955516	+	559	159905393	-	MmarC6_1008	-	heat domain-containing protein
998	 33.11	0	955552..956448	-	298	159905394	-	MmarC6_1009	-	hypothetical protein
999	 38.56	+1	956499..957704	+	401	159905395	-	MmarC6_1010	-	hypothetical protein
1000	 36.47	0	957726..958490	+	254	159905396	-	MmarC6_1011	-	precorrin-4 C11-methyltransferase
1001	 27.27	-1	958487..958684	-	65	159905397	-	MmarC6_1012	-	hypothetical protein
1002	 30.30	0	958671..959033	-	120	159905398	-	MmarC6_1013	-	hypothetical protein
1003	 36.30	0	959118..960026	+	302	159905399	-	MmarC6_1014	-	aspartate carbamoyltransferase catalytic subunit
1004	 36.18	0	960185..960571	+	128	159905400	-	MmarC6_1015	-	30S ribosomal protein S8e
1005	 33.08	0	960625..961797	-	390	159905401	-	MmarC6_1016	-	hypothetical protein
1006	 33.87	0	962698..963261	+	187	159905402	-	MmarC6_1017	-	glutamine amidotransferase subunit PdxT
1007	 27.70	-1	963341..966409	-	1022	159905403	-	MmarC6_1018	-	hypothetical protein
1008	 38.79	+1	966729..967772	+	347	159905404	-	MmarC6_1019	-	hypothetical protein
1009	 37.01	0	967815..968657	+	280	159905405	-	MmarC6_1020	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1010	 34.36	0	968648..969430	+	260	159905406	-	MmarC6_1021	-	NifC-like ABC-type porter
1011	 35.31	0	969427..970488	+	353	159905407	-	MmarC6_1022	-	ABC transporter related
1012	 35.35	0	970493..971683	-	396	159905408	-	MmarC6_1023	-	hypothetical protein
1013	 35.46	0	971739..972962	-	407	159905409	-	MmarC6_1024	-	proteasome-activating nucleotidase
1014	 33.54	0	973265..973741	+	158	159905410	-	MmarC6_1025	-	XRE family transcriptional regulator
1015	 30.75	0	973749..974522	-	257	159905411	-	MmarC6_1026	-	aspartate/glutamate/uridylate kinase
1016	 31.48	0	974546..975409	-	287	159905412	-	MmarC6_1027	-	hypothetical protein
1017	 34.11	0	975423..975809	-	128	159905413	-	MmarC6_1028	-	hypothetical protein
1018	 34.95	0	975816..976370	-	184	159905414	-	MmarC6_1029	-	small GTP-binding protein
1019	 33.96	0	976448..977239	+	263	159905415	-	MmarC6_1030	-	hydrolase
1020	 39.57	+1	977245..978462	-	405	159905416	-	MmarC6_1031	-	S-adenosylmethionine synthetase
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.