IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
751	 27.27	-1	704045..704275	+	76	159905147	-	MmarC6_0760	-	hypothetical protein
752	 27.17	-1	704957..705232	+	91	159905148	-	MmarC6_0761	-	hypothetical protein
753	 24.15	-2	705309..705602	+	97	159905149	-	MmarC6_0762	-	hypothetical protein
754	 31.22	0	706372..706749	-	125	159905150	-	MmarC6_0763	-	hypothetical protein
755	 31.83	0	707253..708182	-	309	159905151	-	MmarC6_0764	-	diphthamide biosynthesis protein
756	 39.34	+1	708272..709552	+	426	159905152	-	MmarC6_0765	-	thiamine biosynthesis protein ThiC
757	 32.53	0	709613..710233	-	206	159905153	-	MmarC6_0766	-	Sua5/YciO/YrdC/YwlC family protein
758	 34.38	0	710245..711006	-	253	159905154	-	MmarC6_0767	-	purine phosphorylase family 2
759	 30.47	0	711115..711498	+	127	159905155	-	MmarC6_0768	-	hypothetical protein
760	 37.10	0	711619..712362	+	247	159905156	-	MmarC6_0769	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
761	 30.05	-1	712533..712745	+	70	159905157	-	MmarC6_0770	-	hypothetical protein
762	 40.13	+1	712890..713360	+	156	159905158	-	MmarC6_0771	-	riboflavin synthase
763	 37.44	0	713534..716503	+	989	159905159	-	MmarC6_0772	-	phosphoribosylformylglycinamidine synthase
764	 35.06	0	716513..717322	+	269	159905160	-	MmarC6_0773	-	phosphoribosylformylglycinamidine synthase I
765	 35.00	0	717457..717816	+	119	159905161	-	MmarC6_0774	-	hypothetical protein
766	 38.79	+1	717932..720277	+	781	159905162	-	MmarC6_0775	-	AAA family ATPase, CDC48 subfamily protein
767	 28.10	-1	720313..720771	-	152	159905163	-	MmarC6_0776	-	hypothetical protein
768	 33.41	0	720914..722290	+	458	159905164	-	MmarC6_0777	-	metal dependent phosphohydrolase
769	 27.93	-1	722287..723489	-	400	159905165	-	MmarC6_0778	-	Mur ligase middle domain-containing protein
770	 34.27	0	723654..724397	-	247	159905166	-	MmarC6_0779	-	hypothetical protein
771	 35.55	0	724401..725258	-	285	159905167	-	MmarC6_0780	-	alpha-L-glutamate ligase
772	 34.75	0	725278..726405	-	375	159905168	-	MmarC6_0781	-	peptidase M50
773	 31.37	0	726530..726988	+	152	159905169	-	MmarC6_0782	-	PadR-like family transcriptional regulator
774	 33.74	0	726990..727964	+	324	159905170	-	MmarC6_0783	-	daunorubicin resistance ABC transporter ATPase subunit
775	 37.09	0	727965..729347	+	460	159905171	-	MmarC6_0784	-	MATE efflux family protein
776	 37.14	0	729357..730118	+	253	159905172	-	MmarC6_0785	-	daunorubicin resistance ABC transporter, inner membrane subunit B
777	 39.23	+1	730209..730649	+	146	159905173	-	MmarC6_0786	-	sirohydrochlorin cobaltochelatase
778	 37.29	0	730698..731732	-	344	159905174	-	MmarC6_0787	-	arsenite-activated ATPase ArsA
779	 31.94	0	731793..732437	-	214	159905175	-	MmarC6_0788	-	hypothetical protein
780	 29.87	-1	732456..733205	+	249	159905176	-	MmarC6_0789	-	2-phosphosulfolactate phosphatase
781	 37.10	0	733346..734647	+	433	159905177	-	MmarC6_0790	-	phenylacetate--CoA ligase
782	 35.26	0	734707..734862	-	51	159905178	-	MmarC6_0791	-	50S ribosomal protein L39e
783	 35.54	0	734879..735466	-	195	159905179	-	MmarC6_0792	-	hypothetical protein
784	 40.06	+1	735476..735832	-	118	159905180	-	MmarC6_0793	-	hypothetical protein
785	 40.61	+1	735857..736282	-	141	159905181	-	MmarC6_0794	-	30S ribosomal protein S19e
786	 34.90	0	736523..736906	-	127	159905182	-	MmarC6_0795	-	hypothetical protein
787	 33.00	0	737144..738649	+	501	159905183	-	MmarC6_0796	-	hypothetical protein
788	 37.04	0	738700..739860	+	386	159905184	-	MmarC6_0797	-	trans-homoaconitate synthase
789	 40.49	+1	740299..741639	-	446	159905185	-	MmarC6_0798	-	citrate transporter
790	 31.94	0	742019..742162	-	47	159905186	-	MmarC6_0799	-	50S ribosomal protein L40e
791	 34.50	0	742167..742682	-	171	159905187	-	MmarC6_0800	-	hypothetical protein
792	 32.01	0	742749..743804	+	351	159905188	-	MmarC6_0801	-	putative RNA methylase
793	 38.83	+1	743828..745738	-	636	159905189	-	MmarC6_0802	-	acetate--CoA ligase
794	 36.63	0	746038..746916	+	292	159905190	-	MmarC6_0803	-	nitrogenase reductase-like protein
795	 33.62	0	746932..748338	+	468	159905191	-	MmarC6_0804	-	hypothetical protein
796	 37.28	0	748363..748920	+	185	159905192	-	MmarC6_0805	-	adenine phosphoribosyltransferase
797	 32.18	0	748935..749543	+	202	159905193	-	MmarC6_0806	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
798	 32.97	0	749571..750686	+	371	159905194	-	MmarC6_0807	-	hypothetical protein
799	 31.11	0	750731..750910	+	59	159905195	-	MmarC6_0808	-	hypothetical protein
800	 27.31	-1	750921..751136	+	71	159905196	-	MmarC6_0809	-	hypothetical protein
801	 32.40	0	751155..752660	+	501	159905197	-	MmarC6_0810	-	thiamine pyrophosphate binding domain-containing protein
802	 33.22	0	752690..753562	+	290	159905198	-	MmarC6_0811	-	DNA topoisomerase type IA Zn finger domain-containing protein
803	 32.81	0	753608..755917	+	769	159905199	-	MmarC6_0812	-	(NiFe) hydrogenase maturation protein HypF
804	 36.70	0	755965..757092	-	375	159905200	-	MmarC6_0813	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
805	 39.14	+1	757116..759146	-	676	159905201	-	MmarC6_0814	-	formate dehydrogenase, alpha subunit
806	 35.42	0	759781..760788	-	335	159905202	-	MmarC6_0815	-	putative deoxyhypusine synthase
807	 38.10	+1	760844..761347	-	167	159905203	-	MmarC6_0816	-	3-isopropylmalate dehydratase, small subunit
808	 38.35	+1	761366..762580	-	404	159905204	-	MmarC6_0817	-	threonine synthase
809	 30.97	0	762852..763190	-	112	159905205	-	MmarC6_0818	-	hypothetical protein
810	 39.92	+1	763240..764742	+	500	159905206	-	MmarC6_0819	-	inosine-5'-monophosphate dehydrogenase
811	 35.42	0	764816..765679	-	287	159905207	-	MmarC6_0820	-	branched-chain amino acid aminotransferase
812	 34.72	0	765729..766883	-	384	159905208	-	MmarC6_0821	-	L-tyrosine decarboxylase
813	 34.28	0	767007..767852	-	281	159905209	-	MmarC6_0822	-	fumarate hydratase
814	 35.42	0	767867..768586	-	239	159905210	-	MmarC6_0823	-	hypothetical protein
815	 27.89	-1	768598..769167	+	189	159905211	-	MmarC6_0824	-	cyclase family protein
816	 40.00	+1	769468..770532	+	354	159905212	-	MmarC6_0825	-	H(2)-dependent methylenetetrahydromethanopterin dehydrogenase
817	 34.70	0	770591..771616	+	341	159905213	-	MmarC6_0826	-	biotin synthase
818	 36.53	0	771647..773179	+	510	159905214	-	MmarC6_0827	-	fibrillarin-like protein
819	 32.74	0	773219..773893	+	224	159905215	-	MmarC6_0828	-	membrane-bound metal-dependent hydrolase
820	 39.07	+1	773923..775089	-	388	159905216	-	MmarC6_0829	-	phosphoribosylglycinamide formyltransferase 2
821	 30.67	0	775273..776172	+	299	159905217	-	MmarC6_0830	-	hypothetical protein
822	 31.13	0	776176..776493	+	105	159905218	-	MmarC6_0831	-	nucleic acid binding OB-fold tRNA/helicase-type
823	 34.11	0	776506..776892	+	128	159905219	-	MmarC6_0832	-	nucleic acid binding OB-fold tRNA/helicase-type
824	 28.10	-1	776873..777598	+	241	159905220	-	MmarC6_0833	-	biotin--acetyl-CoA-carboxylase ligase
825	 34.95	0	777611..778228	+	205	159905221	-	MmarC6_0834	-	beta-lactamase domain-containing protein
826	 31.09	0	778275..778943	+	222	159905222	-	MmarC6_0835	-	hypothetical protein
827	 37.40	0	778965..779996	-	343	159905223	-	MmarC6_0836	-	N-acetyl-gamma-glutamyl-phosphate reductase
828	 41.76	+2	780121..780642	-	173	159905224	-	MmarC6_0837	-	nitroreductase
829	 32.42	0	780812..781468	+	218	159905225	-	MmarC6_0838	-	xylose isomerase domain-containing protein
830	 30.37	0	781501..782310	+	269	159905226	-	MmarC6_0839	-	hypothetical protein
831	 31.77	0	782321..783601	+	426	159905227	-	MmarC6_0840	-	phosphonopyruvate decarboxylase-related protein
832	 23.02	-2	783610..784191	+	193	159905228	-	MmarC6_0841	-	hypothetical protein
833	 35.29	0	784133..784693	-	186	159905229	-	MmarC6_0842	-	hypothetical protein
834	 30.76	0	784772..785392	-	206	159905230	-	MmarC6_0843	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
835	 41.44	+1	786423..787322	-	299	159905231	-	MmarC6_0844	-	pyridoxine biosynthesis protein
836	 36.93	0	787443..788081	-	212	159905232	-	MmarC6_0845	-	protein-L-isoaspartate O-methyltransferase
837	 33.33	0	788162..788644	+	160	159905233	-	MmarC6_0846	-	CBS domain-containing protein
838	 36.39	0	788663..789841	+	392	159905234	-	MmarC6_0847	-	sodium/hydrogen exchanger
839	 34.29	0	789850..791001	-	383	159905235	-	MmarC6_0848	-	major facilitator transporter
840	 43.50	+2	791143..791319	+	58	159905236	-	MmarC6_0849	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
841	 31.51	0	791368..791916	-	182	159905237	-	MmarC6_0850	-	XRE family transcriptional regulator
842	 34.26	0	792041..793228	+	395	159905238	-	MmarC6_0851	-	GntR family transcriptional regulator
843	 35.11	0	793231..794415	-	394	159905239	-	MmarC6_0852	-	phosphotransferase domain-containing protein
844	 35.74	0	794437..795849	+	470	159905240	-	MmarC6_0853	-	THUMP domain-containing protein
845	 37.76	+1	795935..796228	+	97	159905241	-	MmarC6_0854	-	50S ribosomal protein L21e
846	 33.02	0	796276..796599	+	107	159905242	-	MmarC6_0855	-	RNA polymerase Rpb4
847	 34.87	0	796701..797285	+	194	159905243	-	MmarC6_0856	-	hypothetical protein
848	 28.93	-1	797307..798374	+	355	159905244	-	MmarC6_0857	-	glycosyl transferase group 1
849	 27.89	-1	798389..798994	+	201	159905245	-	MmarC6_0858	-	siroheme synthase
850	 33.68	0	798999..800147	+	382	159905246	-	MmarC6_0859	-	glutamyl-tRNA reductase
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.