IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
677	 35.51	0	632709..633350	+	213	159905073	-	MmarC6_0686	-	multiple antibiotic resistance (MarC)-related protein
678	 34.13	0	633423..634049	-	208	159905074	-	MmarC6_0687	-	high-affinity nickel-transporter
679	 33.33	0	634322..634765	-	147	159905075	-	MmarC6_0688	-	hypothetical protein
680	 33.14	0	634799..635854	-	351	159905076	-	MmarC6_0689	-	MscS mechanosensitive ion channel
681	 35.36	0	635862..636797	-	311	159905077	-	MmarC6_0690	-	tyrosyl-tRNA synthetase
682	 27.18	-1	637933..638550	+	205	159905078	-	MmarC6_0691	-	hypothetical protein
683	 32.65	0	638547..638837	+	96	159905079	-	MmarC6_0692	-	RNA polymerase dimerisation
684	 40.97	+1	639013..639654	+	213	159905080	-	MmarC6_0693	-	50S ribosomal protein L1P
685	 39.78	+1	639668..640675	+	335	159905081	-	MmarC6_0694	-	acidic ribosomal protein P0
686	 44.33	+2	640760..641059	+	99	159905082	-	MmarC6_0695	-	50S ribosomal protein L12P
687	 33.70	0	641191..641736	+	181	159905083	-	MmarC6_0696	-	transcription factor
688	 33.66	0	641747..642358	+	203	159905084	-	MmarC6_0697	-	imidazole glycerol phosphate synthase subunit HisH
689	 35.67	0	642386..643285	-	299	159905085	-	MmarC6_0698	-	phosphotransferase domain-containing protein
690	 29.90	-1	643310..644824	-	504	159905086	-	MmarC6_0699	-	carbohydrate kinase, YjeF related protein
691	 35.80	0	644967..647075	+	702	159905087	-	MmarC6_0700	-	CoA-binding domain-containing protein
692	 36.70	0	647138..647434	-	98	159905088	-	MmarC6_0701	-	hypothetical protein
693	 38.33	+1	647608..648387	+	259	159905089	-	MmarC6_0702	-	proteasome subunit alpha
694	 37.45	0	648486..649190	+	234	159905090	-	MmarC6_0703	-	putative RNA-associated protein
695	 36.77	0	649220..649510	+	96	159905091	-	MmarC6_0704	-	50S ribosomal protein L37Ae
696	 33.33	0	649565..649705	+	46	159905092	-	MmarC6_0705	-	RNA polymerase Rbp10
697	 31.11	0	649705..650199	+	164	159905093	-	MmarC6_0706	-	ribosomal biogenesis protein
698	 31.35	0	650207..650458	+	83	159905094	-	MmarC6_0707	-	hypothetical protein
699	 34.80	0	650517..650858	+	113	159905095	-	MmarC6_0708	-	prefoldin, beta subunit
700	 33.92	0	650897..651913	+	338	159905096	-	MmarC6_0709	-	phosphoesterase domain-containing protein
701	 30.67	0	651906..652280	+	124	159905097	-	MmarC6_0710	-	hypothetical protein
702	 25.56	-2	652291..652560	+	89	159905098	-	MmarC6_0711	-	hypothetical protein
703	 33.73	0	652561..654321	-	586	159905099	-	MmarC6_0712	-	hypothetical protein
704	 33.14	0	654324..654851	-	175	159905100	-	MmarC6_0713	-	hypothetical protein
705	 30.42	0	654862..655719	-	285	159905101	-	MmarC6_0714	-	hypothetical protein
706	 28.57	-1	655724..656227	-	167	159905102	-	MmarC6_0715	-	hypothetical protein
707	 29.36	-1	656315..656767	-	150	159905103	-	MmarC6_0716	-	hypothetical protein
708	 32.08	0	656745..657143	-	132	159905104	-	MmarC6_0717	-	hypothetical protein
709	 33.56	0	657176..658069	-	297	159905105	-	MmarC6_0718	-	hypothetical protein
710	 34.46	0	658069..659217	-	382	159905106	-	MmarC6_0719	-	hypothetical protein
711	 32.82	0	659353..659742	-	129	159905107	-	MmarC6_0720	-	hypothetical protein
712	 30.64	0	659744..660784	-	346	159905108	-	MmarC6_0721	-	peptidase A24A domain-containing protein
713	 34.69	0	660799..661167	-	122	159905109	-	MmarC6_0722	-	hypothetical protein
714	 35.37	0	661248..661934	+	228	159905110	-	MmarC6_0723	-	metal dependent phosphohydrolase
715	 38.83	+1	662051..662833	+	260	159905111	-	MmarC6_0724	-	extracellular solute-binding protein
716	 33.92	0	662919..663599	+	226	159905112	-	MmarC6_0725	-	polar amino acid ABC transporter, inner membrane subunit
717	 35.93	0	663583..664314	+	243	159905113	-	MmarC6_0726	-	ABC transporter related
718	 33.42	0	664331..665452	-	373	159905114	-	MmarC6_0727	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
719	 36.87	0	665623..667998	+	791	159905115	-	MmarC6_0728	-	anaerobic ribonucleoside-triphosphate reductase
720	 32.76	0	668126..668827	+	233	159905116	-	MmarC6_0729	-	exsB protein
721	 33.83	0	668835..669839	+	334	159905117	-	MmarC6_0730	-	glutamate-1-semialdehyde 2,1-aminomutase
722	 36.21	0	669885..671168	-	427	159905118	-	MmarC6_0731	-	glutamate-1-semialdehyde aminotransferase
723	 34.42	0	671178..671453	-	91	159905119	-	MmarC6_0732	-	hypothetical protein
724	 27.50	-1	671463..671702	-	79	159905120	-	MmarC6_0733	-	hypothetical protein
725	 39.76	+1	671782..673260	-	492	159905121	-	MmarC6_0734	-	sodium/proline symporter
726	 37.41	0	673458..674927	-	489	159905122	-	MmarC6_0735	-	Na+/solute symporter
727	 34.96	0	675079..676002	-	307	159905123	-	MmarC6_0736	-	putative manganese-dependent inorganic pyrophosphatase
728	 30.49	0	676377..677114	-	245	159905124	-	MmarC6_0737	-	hypothetical protein
729	 28.22	-1	677269..677679	-	136	159905125	-	MmarC6_0738	-	hypothetical protein
730	 31.88	0	677792..678343	+	183	159905126	-	MmarC6_0739	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
731	 31.75	0	678355..679236	+	293	159905127	-	MmarC6_0740	-	triphosphoribosyl-dephospho-CoA protein
732	 35.77	0	679248..680972	+	574	159905128	-	MmarC6_0741	-	glycyl-tRNA synthetase
733	 25.38	-2	680974..681639	-	221	159905129	-	MmarC6_0742	-	hypothetical protein
734	 31.00	0	681737..682636	-	299	159905130	-	MmarC6_0743	-	hypothetical protein
735	 32.22	0	682699..683328	+	209	159905131	-	MmarC6_0744	-	XRE family transcriptional regulator
736	 34.15	0	683346..684575	-	409	159905132	-	MmarC6_0745	-	aldo/keto reductase
737	 31.58	0	684628..685770	-	380	159905133	-	MmarC6_0746	-	ABC transporter related
738	 33.93	0	685780..686445	-	221	159905134	-	MmarC6_0747	-	molybdate ABC transporter, inner membrane subunit
739	 36.83	0	686455..687255	-	266	159905135	-	MmarC6_0748	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
740	 36.53	0	687791..688321	-	176	159905136	-	MmarC6_0749	-	flavoprotein
741	 33.33	0	688390..688623	-	77	159905137	-	MmarC6_0750	-	redox-active disulfide protein 2
742	 35.74	0	688667..689623	-	318	159905138	-	MmarC6_0751	-	permease
743	 33.23	0	690149..691111	-	320	159905139	-	MmarC6_0752	-	CaCA family Na(+)/Ca(+) antiporter
744	 36.87	0	691713..692051	-	112	159905140	-	MmarC6_0753	-	hypothetical protein
745	 37.38	0	692045..692686	-	213	159905141	-	MmarC6_0754	-	MotA/TolQ/ExbB proton channel
746	 35.83	0	692686..693405	-	239	159905142	-	MmarC6_0755	-	hypothetical protein
747	 38.07	+1	693815..700321	-	2168	159905143	-	MmarC6_0756	-	cobaltochelatase
748	 39.52	+1	700866..702206	+	446	159905144	-	MmarC6_0757	-	hypothetical protein
749	 26.91	-1	702301..702798	-	165	159905145	-	MmarC6_0758	-	hypothetical protein
750	 32.59	0	702886..703290	-	134	159905146	-	MmarC6_0759	-	protein tyrosine phosphatase
751	 27.27	-1	704045..704275	+	76	159905147	-	MmarC6_0760	-	hypothetical protein
752	 27.17	-1	704957..705232	+	91	159905148	-	MmarC6_0761	-	hypothetical protein
753	 24.15	-2	705309..705602	+	97	159905149	-	MmarC6_0762	-	hypothetical protein
754	 31.22	0	706372..706749	-	125	159905150	-	MmarC6_0763	-	hypothetical protein
755	 31.83	0	707253..708182	-	309	159905151	-	MmarC6_0764	-	diphthamide biosynthesis protein
756	 39.34	+1	708272..709552	+	426	159905152	-	MmarC6_0765	-	thiamine biosynthesis protein ThiC
757	 32.53	0	709613..710233	-	206	159905153	-	MmarC6_0766	-	Sua5/YciO/YrdC/YwlC family protein
758	 34.38	0	710245..711006	-	253	159905154	-	MmarC6_0767	-	purine phosphorylase family 2
759	 30.47	0	711115..711498	+	127	159905155	-	MmarC6_0768	-	hypothetical protein
760	 37.10	0	711619..712362	+	247	159905156	-	MmarC6_0769	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
761	 30.05	-1	712533..712745	+	70	159905157	-	MmarC6_0770	-	hypothetical protein
762	 40.13	+1	712890..713360	+	156	159905158	-	MmarC6_0771	-	riboflavin synthase
763	 37.44	0	713534..716503	+	989	159905159	-	MmarC6_0772	-	phosphoribosylformylglycinamidine synthase
764	 35.06	0	716513..717322	+	269	159905160	-	MmarC6_0773	-	phosphoribosylformylglycinamidine synthase I
765	 35.00	0	717457..717816	+	119	159905161	-	MmarC6_0774	-	hypothetical protein
766	 38.79	+1	717932..720277	+	781	159905162	-	MmarC6_0775	-	AAA family ATPase, CDC48 subfamily protein
767	 28.10	-1	720313..720771	-	152	159905163	-	MmarC6_0776	-	hypothetical protein
768	 33.41	0	720914..722290	+	458	159905164	-	MmarC6_0777	-	metal dependent phosphohydrolase
769	 27.93	-1	722287..723489	-	400	159905165	-	MmarC6_0778	-	Mur ligase middle domain-containing protein
770	 34.27	0	723654..724397	-	247	159905166	-	MmarC6_0779	-	hypothetical protein
771	 35.55	0	724401..725258	-	285	159905167	-	MmarC6_0780	-	alpha-L-glutamate ligase
772	 34.75	0	725278..726405	-	375	159905168	-	MmarC6_0781	-	peptidase M50
773	 31.37	0	726530..726988	+	152	159905169	-	MmarC6_0782	-	PadR-like family transcriptional regulator
774	 33.74	0	726990..727964	+	324	159905170	-	MmarC6_0783	-	daunorubicin resistance ABC transporter ATPase subunit
775	 37.09	0	727965..729347	+	460	159905171	-	MmarC6_0784	-	MATE efflux family protein
776	 37.14	0	729357..730118	+	253	159905172	-	MmarC6_0785	-	daunorubicin resistance ABC transporter, inner membrane subunit B
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.