IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
625	 39.50	+1	584624..585775	-	383	159905021	-	MmarC6_0634	-	hypothetical protein
626	 34.37	0	586144..587982	+	612	159905022	-	MmarC6_0635	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit
627	 33.00	0	587979..588587	+	202	159905023	-	MmarC6_0636	-	indolepyruvate oxidoreductase subunit B
628	 37.35	0	588577..589821	+	414	159905024	-	MmarC6_0637	-	phenylacetate--CoA ligase
629	 32.24	0	590108..590563	-	151	159905025	-	MmarC6_0638	-	hypothetical protein
630	 39.07	+1	590565..591017	-	150	159905026	-	MmarC6_0639	-	hypothetical protein
631	 38.28	+1	591038..591421	-	127	159905027	-	MmarC6_0640	-	hypothetical protein
632	 30.94	0	591476..592060	-	194	159905028	-	MmarC6_0641	-	hypothetical protein
633	 39.13	+1	592176..592520	-	114	159905029	-	MmarC6_0642	-	DsrE family protein
634	 31.92	0	592530..592742	-	70	159905030	-	MmarC6_0643	-	SirA family protein
635	 28.70	-1	592899..593588	-	229	159905031	-	MmarC6_0644	-	zinc finger SWIM domain-containing protein
636	 32.14	0	593661..595415	+	584	159905032	-	MmarC6_0645	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
637	 35.08	0	595379..596239	+	286	159905033	-	MmarC6_0646	-	2-oxoacid ferredoxin oxidoreductase subunit beta
638	 28.85	-1	596287..597045	+	252	159905034	-	MmarC6_0647	-	N-glycosylase/DNA lyase
639	 39.86	+1	597112..597249	+	45	159905035	-	MmarC6_0648	-	rubredoxin-type Fe(Cys)4 protein
640	 31.11	0	597256..597615	-	119	159905036	-	MmarC6_0649	-	hypothetical protein
641	 33.86	0	597814..598194	-	126	159905037	-	MmarC6_0650	-	hydrogenase nickel insertion protein HypA
642	 30.16	-1	598194..598697	-	167	159905038	-	MmarC6_0651	-	hypothetical protein
643	 33.33	0	598750..599280	+	176	159905039	-	MmarC6_0652	-	hypothetical protein
644	 28.62	-1	599295..600143	+	282	159905040	-	MmarC6_0653	-	integrase family protein
645	 29.10	-1	600244..600645	+	133	159905041	-	MmarC6_0654	-	hypothetical protein
646	 37.09	0	602472..603056	-	194	159905042	-	MmarC6_0655	-	50S ribosomal protein L15e
647	 36.93	0	603284..603700	+	138	159905043	-	MmarC6_0656	-	translation initiation factor IF-2 subunit beta
648	 36.00	0	603757..604845	+	362	159905044	-	MmarC6_0657	-	NMD3 family protein
649	 36.20	0	604876..605781	-	301	159905045	-	MmarC6_0658	-	homoserine kinase
650	 36.02	0	605905..606873	-	322	159905046	-	MmarC6_0659	-	Pyrrolo-quinoline quinone
651	 34.63	0	607032..607958	+	308	159905047	-	MmarC6_0660	-	aldolase
652	 26.88	-1	607970..608155	+	61	159905048	-	MmarC6_0661	-	hypothetical protein
653	 37.43	0	608152..609495	-	447	159905049	-	MmarC6_0662	-	AIR synthase-like protein
654	 35.43	0	609558..609938	-	126	159905050	-	MmarC6_0663	-	nascent polypeptide-associated complex protein
655	 37.12	0	610189..611271	+	360	159905051	-	MmarC6_0664	-	hydrogenase expression/formation protein HypD
656	 26.02	-2	611294..612031	-	245	159905052	-	MmarC6_0665	-	hypothetical protein
657	 33.71	0	612071..612865	-	264	159905053	-	MmarC6_0666	-	CBS domain-containing protein
658	 32.03	0	612871..613101	-	76	159905054	-	MmarC6_0667	-	hypothetical protein
659	 34.50	0	613113..614573	-	486	159905055	-	MmarC6_0668	-	TrkA domain-containing protein
660	 35.89	0	614708..616504	-	598	159905056	-	MmarC6_0669	-	translation initiation factor IF-2
661	 37.86	+1	616663..617082	-	139	159905057	-	MmarC6_0670	-	nucleoside-diphosphate kinase
662	 34.38	0	617273..617749	+	158	159905058	-	MmarC6_0671	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
663	 34.92	0	617751..619643	-	630	159905059	-	MmarC6_0672	-	ATPase
664	 30.77	0	619704..620093	-	129	159905060	-	MmarC6_0673	-	phosphoribosyl-AMP cyclohydrolase
665	 34.97	0	620116..621093	-	325	159905061	-	MmarC6_0674	-	beta-ribofuranosylaminobenzene 5'-phosphate synthase
666	 37.66	0	621106..621567	-	153	159905062	-	MmarC6_0675	-	signal transduction protein
667	 34.30	0	621643..622785	+	380	159905063	-	MmarC6_0676	-	TraB family protein
668	 31.30	0	622831..625293	-	820	159905064	-	MmarC6_0677	-	periplasmic copper-binding
669	 39.20	+1	625534..626538	-	334	159905065	-	MmarC6_0678	-	hydrogenase expression/formation protein HypE
670	 33.47	0	626750..627505	+	251	159905066	-	MmarC6_0679	-	phosphosulfolactate synthase
671	 37.25	0	627524..628315	+	263	159905067	-	MmarC6_0680	-	ABC transporter related
672	 39.06	+1	628341..629039	+	232	159905068	-	MmarC6_0681	-	cobalamin synthesis protein P47K
673	 35.91	0	629041..629700	+	219	159905069	-	MmarC6_0682	-	Fe-S cluster domain-containing protein
674	 29.72	-1	629710..630927	-	405	159905070	-	MmarC6_0683	-	hypothetical protein
675	 34.73	0	631170..631958	+	262	159905071	-	MmarC6_0684	-	tRNA pseudouridine synthase A
676	 35.56	0	631973..632689	+	238	159905072	-	MmarC6_0685	-	hypothetical protein
677	 35.51	0	632709..633350	+	213	159905073	-	MmarC6_0686	-	multiple antibiotic resistance (MarC)-related protein
678	 34.13	0	633423..634049	-	208	159905074	-	MmarC6_0687	-	high-affinity nickel-transporter
679	 33.33	0	634322..634765	-	147	159905075	-	MmarC6_0688	-	hypothetical protein
680	 33.14	0	634799..635854	-	351	159905076	-	MmarC6_0689	-	MscS mechanosensitive ion channel
681	 35.36	0	635862..636797	-	311	159905077	-	MmarC6_0690	-	tyrosyl-tRNA synthetase
682	 27.18	-1	637933..638550	+	205	159905078	-	MmarC6_0691	-	hypothetical protein
683	 32.65	0	638547..638837	+	96	159905079	-	MmarC6_0692	-	RNA polymerase dimerisation
684	 40.97	+1	639013..639654	+	213	159905080	-	MmarC6_0693	-	50S ribosomal protein L1P
685	 39.78	+1	639668..640675	+	335	159905081	-	MmarC6_0694	-	acidic ribosomal protein P0
686	 44.33	+2	640760..641059	+	99	159905082	-	MmarC6_0695	-	50S ribosomal protein L12P
687	 33.70	0	641191..641736	+	181	159905083	-	MmarC6_0696	-	transcription factor
688	 33.66	0	641747..642358	+	203	159905084	-	MmarC6_0697	-	imidazole glycerol phosphate synthase subunit HisH
689	 35.67	0	642386..643285	-	299	159905085	-	MmarC6_0698	-	phosphotransferase domain-containing protein
690	 29.90	-1	643310..644824	-	504	159905086	-	MmarC6_0699	-	carbohydrate kinase, YjeF related protein
691	 35.80	0	644967..647075	+	702	159905087	-	MmarC6_0700	-	CoA-binding domain-containing protein
692	 36.70	0	647138..647434	-	98	159905088	-	MmarC6_0701	-	hypothetical protein
693	 38.33	+1	647608..648387	+	259	159905089	-	MmarC6_0702	-	proteasome subunit alpha
694	 37.45	0	648486..649190	+	234	159905090	-	MmarC6_0703	-	putative RNA-associated protein
695	 36.77	0	649220..649510	+	96	159905091	-	MmarC6_0704	-	50S ribosomal protein L37Ae
696	 33.33	0	649565..649705	+	46	159905092	-	MmarC6_0705	-	RNA polymerase Rbp10
697	 31.11	0	649705..650199	+	164	159905093	-	MmarC6_0706	-	ribosomal biogenesis protein
698	 31.35	0	650207..650458	+	83	159905094	-	MmarC6_0707	-	hypothetical protein
699	 34.80	0	650517..650858	+	113	159905095	-	MmarC6_0708	-	prefoldin, beta subunit
700	 33.92	0	650897..651913	+	338	159905096	-	MmarC6_0709	-	phosphoesterase domain-containing protein
701	 30.67	0	651906..652280	+	124	159905097	-	MmarC6_0710	-	hypothetical protein
702	 25.56	-2	652291..652560	+	89	159905098	-	MmarC6_0711	-	hypothetical protein
703	 33.73	0	652561..654321	-	586	159905099	-	MmarC6_0712	-	hypothetical protein
704	 33.14	0	654324..654851	-	175	159905100	-	MmarC6_0713	-	hypothetical protein
705	 30.42	0	654862..655719	-	285	159905101	-	MmarC6_0714	-	hypothetical protein
706	 28.57	-1	655724..656227	-	167	159905102	-	MmarC6_0715	-	hypothetical protein
707	 29.36	-1	656315..656767	-	150	159905103	-	MmarC6_0716	-	hypothetical protein
708	 32.08	0	656745..657143	-	132	159905104	-	MmarC6_0717	-	hypothetical protein
709	 33.56	0	657176..658069	-	297	159905105	-	MmarC6_0718	-	hypothetical protein
710	 34.46	0	658069..659217	-	382	159905106	-	MmarC6_0719	-	hypothetical protein
711	 32.82	0	659353..659742	-	129	159905107	-	MmarC6_0720	-	hypothetical protein
712	 30.64	0	659744..660784	-	346	159905108	-	MmarC6_0721	-	peptidase A24A domain-containing protein
713	 34.69	0	660799..661167	-	122	159905109	-	MmarC6_0722	-	hypothetical protein
714	 35.37	0	661248..661934	+	228	159905110	-	MmarC6_0723	-	metal dependent phosphohydrolase
715	 38.83	+1	662051..662833	+	260	159905111	-	MmarC6_0724	-	extracellular solute-binding protein
716	 33.92	0	662919..663599	+	226	159905112	-	MmarC6_0725	-	polar amino acid ABC transporter, inner membrane subunit
717	 35.93	0	663583..664314	+	243	159905113	-	MmarC6_0726	-	ABC transporter related
718	 33.42	0	664331..665452	-	373	159905114	-	MmarC6_0727	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
719	 36.87	0	665623..667998	+	791	159905115	-	MmarC6_0728	-	anaerobic ribonucleoside-triphosphate reductase
720	 32.76	0	668126..668827	+	233	159905116	-	MmarC6_0729	-	exsB protein
721	 33.83	0	668835..669839	+	334	159905117	-	MmarC6_0730	-	glutamate-1-semialdehyde 2,1-aminomutase
722	 36.21	0	669885..671168	-	427	159905118	-	MmarC6_0731	-	glutamate-1-semialdehyde aminotransferase
723	 34.42	0	671178..671453	-	91	159905119	-	MmarC6_0732	-	hypothetical protein
724	 27.50	-1	671463..671702	-	79	159905120	-	MmarC6_0733	-	hypothetical protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.