IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
528	 25.46	-2	498422..499069	+	215	159904924	-	MmarC6_0537	-	hypothetical protein
529	 26.06	-2	499093..499257	+	54	159904925	-	MmarC6_0538	-	hypothetical protein
530	 25.72	-2	499283..499558	+	91	159904926	-	MmarC6_0539	-	hypothetical protein
531	 25.64	-2	499582..499737	+	51	159904927	-	MmarC6_0540	-	hypothetical protein
532	 34.86	0	500243..502273	-	676	159904928	-	MmarC6_0541	-	hypothetical protein
533	 32.80	0	502270..504534	-	754	159904929	-	MmarC6_0542	-	hypothetical protein
534	 32.21	0	504550..505260	-	236	159904930	-	MmarC6_0543	-	hypothetical protein
535	 33.86	0	505273..505653	-	126	159904931	-	MmarC6_0544	-	hypothetical protein
536	 41.55	+2	505657..506070	-	137	159904932	-	MmarC6_0545	-	hypothetical protein
537	 31.94	0	506071..506358	-	95	159904933	-	MmarC6_0546	-	hypothetical protein
538	 30.52	0	506522..507160	-	212	159904934	-	MmarC6_0547	-	hypothetical protein
539	 30.43	0	507153..507428	-	91	159904935	-	MmarC6_0548	-	hypothetical protein
540	 32.02	0	507418..508863	-	481	159904936	-	MmarC6_0549	-	hypothetical protein
541	 30.72	0	508853..509197	-	114	159904937	-	MmarC6_0550	-	hypothetical protein
542	 26.25	-2	509202..509540	-	112	159904938	-	MmarC6_0551	-	hypothetical protein
543	 27.86	-1	509550..509750	-	66	159904939	-	MmarC6_0552	-	hypothetical protein
544	 31.97	0	509751..510116	-	121	159904940	-	MmarC6_0553	-	hypothetical protein
545	 29.43	-1	510117..510500	-	127	159904941	-	MmarC6_0554	-	hypothetical protein
546	 31.03	0	510501..510761	-	86	159904942	-	MmarC6_0555	-	hypothetical protein
547	 26.95	-1	510801..510941	-	46	159904943	-	MmarC6_0556	-	hypothetical protein
548	 29.54	-1	510944..511180	-	78	159904944	-	MmarC6_0557	-	hypothetical protein
549	 37.14	0	511347..511556	-	69	159904945	-	MmarC6_0558	-	hypothetical protein
550	 30.89	0	511743..512069	-	108	159904946	-	MmarC6_0559	-	hypothetical protein
551	 34.09	0	512084..514207	-	707	159904947	-	MmarC6_0560	-	DEAD/DEAH box helicase domain-containing protein
552	 35.41	0	514204..515553	-	449	159904948	-	MmarC6_0561	-	hypothetical protein
553	 36.69	0	515554..515970	-	138	159904949	-	MmarC6_0562	-	hypothetical protein
554	 34.01	0	515972..516412	-	146	159904950	-	MmarC6_0563	-	hypothetical protein
555	 29.86	-1	516390..516677	-	95	159904951	-	MmarC6_0564	-	hypothetical protein
556	 33.33	0	516678..516806	-	42	159904952	-	MmarC6_0565	-	hypothetical protein
557	 28.14	-1	517027..517392	+	121	159904953	-	MmarC6_0566	-	ArsR family transcriptional regulator
558	 26.55	-1	517508..518833	+	441	159904954	-	MmarC6_0567	-	hypothetical protein
559	 26.21	-2	518941..519867	-	308	159904955	-	MmarC6_0568	-	hypothetical protein
560	 30.06	-1	520036..521166	+	376	159904956	-	MmarC6_0569	-	hypothetical protein
561	 30.35	0	521209..521610	+	133	159904957	-	MmarC6_0570	-	hypothetical protein
562	 27.97	-1	521699..523543	+	614	159904958	-	MmarC6_0571	-	ATP-dependent OLD family endonuclease
563	 28.73	-1	523607..524410	-	267	159904959	-	MmarC6_0572	-	hypothetical protein
564	 28.21	-1	524373..525113	-	246	159904960	-	MmarC6_0573	-	hypothetical protein
565	 28.04	-1	525341..526228	-	295	159904961	-	MmarC6_0574	-	integrase family protein
566	 31.33	0	526237..526785	-	182	159904962	-	MmarC6_0575	-	hypothetical protein
567	 33.41	0	527001..528374	-	457	159904963	-	MmarC6_0576	-	radical SAM domain-containing protein
568	 33.52	0	528459..528989	+	176	159904964	-	MmarC6_0577	-	hypothetical protein
569	 28.92	-1	529020..529268	-	82	159904965	-	MmarC6_0578	-	hypothetical protein
570	 39.45	+1	529471..530304	+	277	159904966	-	MmarC6_0579	-	F420-dependent methylenetetrahydromethanopterin dehydrogenase
571	 33.83	0	530388..530987	-	199	159904967	-	MmarC6_0580	-	hypothetical protein
572	 31.00	0	531161..531847	+	228	159904968	-	MmarC6_0581	-	glycosyl transferase family protein
573	 28.53	-1	531869..532993	+	374	159904969	-	MmarC6_0582	-	glycosyl transferase group 1
574	 26.73	-1	533005..535170	+	721	159904970	-	MmarC6_0583	-	hypothetical protein
575	 27.20	-1	535167..536210	-	347	159904971	-	MmarC6_0584	-	glycosyl transferase family protein
576	 31.14	0	536215..537402	-	395	159904972	-	MmarC6_0585	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit
577	 28.54	-1	537392..538579	-	395	159904973	-	MmarC6_0586	-	polysaccharide pyruvyl transferase
578	 31.06	0	538572..539231	-	219	159904974	-	MmarC6_0587	-	acetyltransferase
579	 27.01	-1	539236..540468	-	410	159904975	-	MmarC6_0588	-	polysaccharide biosynthesis protein
580	 29.60	-1	540440..541297	-	285	159904976	-	MmarC6_0589	-	dTDP-4-dehydrorhamnose reductase
581	 33.12	0	541306..542229	-	307	159904977	-	MmarC6_0590	-	dTDP-glucose 4,6-dehydratase
582	 31.51	0	542242..543117	-	291	159904978	-	MmarC6_0591	-	glucose-1-phosphate thymidylyltransferase
583	 30.32	0	543117..543680	-	187	159904979	-	MmarC6_0592	-	dTDP-4-dehydrorhamnose 3,5-epimerase
584	 31.40	0	543766..545163	-	465	159904980	-	MmarC6_0593	-	hypothetical protein
585	 36.50	0	545214..547205	-	663	159904981	-	MmarC6_0594	-	hypothetical protein
586	 32.23	0	547290..547835	-	181	159904982	-	MmarC6_0595	-	hypothetical protein
587	 26.25	-2	547845..548084	-	79	159904983	-	MmarC6_0596	-	hypothetical protein
588	 27.87	-1	548104..548799	-	231	159904984	-	MmarC6_0597	-	hypothetical protein
589	 25.76	-2	548875..550710	+	611	159904985	-	MmarC6_0598	-	hypothetical protein
590	 27.03	-1	550710..551708	+	332	159904986	-	MmarC6_0599	-	hypothetical protein
591	 32.37	0	551683..552612	+	309	159904987	-	MmarC6_0600	-	ATPase
592	 26.11	-2	552627..553928	+	433	159904988	-	MmarC6_0601	-	hypothetical protein
593	 23.19	-2	553925..554476	+	183	159904989	-	MmarC6_0602	-	hypothetical protein
594	 30.09	-1	554473..555798	+	441	159904990	-	MmarC6_0603	-	nucleotide sugar dehydrogenase
595	 32.52	0	555834..556574	+	246	159904991	-	MmarC6_0604	-	CoA-substrate-specific enzyme activase
596	 34.18	0	556714..557307	+	197	159904992	-	MmarC6_0605	-	GPR1/FUN34/yaaH family protein
597	 30.26	0	557461..557688	+	75	159904993	-	MmarC6_0606	-	hypothetical protein
598	 35.12	0	557943..559064	+	373	159904994	-	MmarC6_0607	-	2-hydroxyglutaryl-CoA dehydratase D-component
599	 34.92	0	559192..560073	+	293	159904995	-	MmarC6_0608	-	hypothetical protein
600	 32.89	0	560126..560797	+	223	159904996	-	MmarC6_0609	-	ATP binding protein
601	 29.37	-1	560794..561222	-	142	159904997	-	MmarC6_0610	-	flagella protein F
602	 38.22	+1	561531..563024	-	497	159904998	-	MmarC6_0611	-	pyruvate carboxylase subunit A
603	 36.55	0	563070..564779	-	569	159904999	-	MmarC6_0612	-	pyruvate carboxylase subunit B
604	 30.81	0	565282..565797	-	171	159905000	-	MmarC6_0613	-	NUDIX hydrolase
605	 34.80	0	565882..566970	+	362	159905001	-	MmarC6_0614	-	hypothetical protein
606	 32.89	0	567002..567448	+	148	159905002	-	MmarC6_0615	-	hypothetical protein
607	 32.35	0	567465..567872	+	135	159905003	-	MmarC6_0616	-	resolvase, Holliday junction-type
608	 32.37	0	567920..568333	-	137	159905004	-	MmarC6_0617	-	hypothetical protein
609	 32.91	0	568405..569109	-	234	159905005	-	MmarC6_0618	-	RNA methyltransferase
610	 34.73	0	569280..569993	-	237	159905006	-	MmarC6_0619	-	hypothetical protein
611	 33.59	0	570432..570824	+	130	159905007	-	MmarC6_0620	-	histidine triad (HIT) protein
612	 34.76	0	570865..571497	-	210	159905008	-	MmarC6_0621	-	precorrin-8X methylmutase
613	 37.11	0	571512..571802	-	96	159905009	-	MmarC6_0622	-	hypothetical protein
614	 33.33	0	571820..572626	-	268	159905010	-	MmarC6_0623	-	hypothetical protein
615	 37.09	0	572722..574239	-	505	159905011	-	MmarC6_0624	-	thymidine phosphorylase
616	 36.14	0	574375..576366	-	663	159905012	-	MmarC6_0625	-	methionyl-tRNA synthetase
617	 38.42	+1	576575..577597	+	340	159905013	-	MmarC6_0626	-	glyceraldehyde-3-phosphate dehydrogenase
618	 28.61	-1	577667..578047	+	126	159905014	-	MmarC6_0627	-	hypothetical protein
619	 30.81	0	578098..579126	+	342	159905015	-	MmarC6_0628	-	protein of unknown function Met10
620	 36.15	0	579139..580593	-	484	159905016	-	MmarC6_0629	-	replication factor C large subunit
621	 30.22	0	580594..581139	-	181	159905017	-	MmarC6_0630	-	hypothetical protein
622	 33.92	0	581259..582110	+	283	159905018	-	MmarC6_0631	-	shikimate kinase
623	 31.73	0	582130..582816	+	228	159905019	-	MmarC6_0632	-	precorrin-2 C20-methyltransferase
624	 38.05	+1	582895..584547	+	550	159905020	-	MmarC6_0633	-	dihydroxy-acid dehydratase
625	 39.50	+1	584624..585775	-	383	159905021	-	MmarC6_0634	-	hypothetical protein
626	 34.37	0	586144..587982	+	612	159905022	-	MmarC6_0635	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit
627	 33.00	0	587979..588587	+	202	159905023	-	MmarC6_0636	-	indolepyruvate oxidoreductase subunit B
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.