IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
418	 28.10	-1	390001..390363	+	120	159904814	-	MmarC6_0425	-	MarR family transcriptional regulator
419	 27.11	-1	391322..392575	+	417	159904815	-	MmarC6_0427	-	hypothetical protein
420	 27.75	-1	392705..393277	+	190	159904816	-	MmarC6_0428	-	hypothetical protein
421	 28.92	-1	393334..394308	-	324	159904817	-	MmarC6_0429	-	hypothetical protein
422	 33.01	0	394628..395542	-	304	159904818	-	MmarC6_0430	-	hypothetical protein
423	 35.10	0	395642..395980	+	112	159904819	-	MmarC6_0431	-	hypothetical protein
424	 33.33	0	397016..397393	-	125	159904820	-	MmarC6_0432	-	hypothetical protein
425	 30.45	0	398127..398369	+	80	159904821	-	MmarC6_0433	-	hypothetical protein
426	 25.09	-2	398384..398662	+	92	159904822	-	MmarC6_0434	-	plasmid stabilization system protein
427	 25.97	-2	398659..398889	-	76	159904823	-	MmarC6_0435	-	addiction module antitoxin
428	 32.82	0	399200..400171	-	323	159904824	-	MmarC6_0436	-	integrase family protein
429	 35.93	0	400158..400427	-	89	159904825	-	MmarC6_0437	-	hypothetical protein
430	 38.37	+1	400431..402455	-	674	159904826	-	MmarC6_0438	-	MCM family protein
431	 37.76	+1	402457..402840	-	127	159904827	-	MmarC6_0439	-	hypothetical protein
432	 38.36	+1	403039..403257	-	72	159904828	-	MmarC6_0440	-	hypothetical protein
433	 34.10	0	403260..403778	-	172	159904829	-	MmarC6_0441	-	hypothetical protein
434	 34.92	0	403877..404128	-	83	159904830	-	MmarC6_0442	-	hypothetical protein
435	 28.93	-1	404283..404645	+	120	159904831	-	MmarC6_0443	-	transcriptional regulator PadR family protein
436	 30.01	-1	405025..406470	+	481	159904832	-	MmarC6_0444	-	tetratricopeptide domain-containing protein
437	 27.85	-1	406566..407897	-	443	159904833	-	MmarC6_0445	-	hypothetical protein
438	 28.97	-1	408298..409857	+	519	159904834	-	MmarC6_0446	-	FRG domain-containing protein
439	 27.86	-1	409968..410588	+	206	159904835	-	MmarC6_0447	-	hypothetical protein
440	 30.77	0	410601..410795	+	64	159904836	-	MmarC6_0448	-	hypothetical protein
441	 27.96	-1	410814..412190	+	458	159904837	-	MmarC6_0449	-	hypothetical protein
442	 25.00	-2	412408..412695	-	95	159904838	-	MmarC6_0450	-	addiction module antitoxin
443	 31.60	0	412685..412915	-	76	159904839	-	MmarC6_0451	-	hypothetical protein
444	 26.17	-2	413023..413706	-	227	159904840	-	MmarC6_0452	-	hypothetical protein
445	 33.60	0	414438..414815	-	125	159904841	-	MmarC6_0453	-	hypothetical protein
446	 31.63	0	415308..416954	-	548	159904842	-	MmarC6_0454	-	hypothetical protein
447	 29.27	-1	417181..417918	-	245	159904843	-	MmarC6_0455	-	hypothetical protein
448	 36.44	0	418045..419685	-	546	159904844	-	MmarC6_0456	-	DEAD/DEAH box helicase domain-containing protein
449	 32.79	0	420823..421371	+	182	159904845	-	MmarC6_0457	-	integrase family protein
450	 28.21	-1	421516..422100	+	194	159904846	-	MmarC6_0458	-	hypothetical protein
451	 34.21	0	422203..423231	+	342	159904847	-	MmarC6_0459	-	peptidase M50
452	 29.30	-1	423273..423545	+	90	159904848	-	MmarC6_0460	-	hypothetical protein
453	 35.00	0	423724..424083	+	119	159904849	-	MmarC6_0461	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
454	 32.52	0	424093..424950	+	285	159904850	-	MmarC6_0462	-	cobyrinic acid ac-diamide synthase
455	 33.57	0	424947..425795	+	282	159904851	-	MmarC6_0463	-	cobyrinic acid ac-diamide synthase
456	 36.14	0	425955..426239	+	94	159904852	-	MmarC6_0464	-	hypothetical protein
457	 36.75	0	426270..426620	+	116	159904853	-	MmarC6_0465	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
458	 31.65	0	426839..427075	+	78	159904854	-	MmarC6_0466	-	hypothetical protein
459	 34.80	0	427167..427370	-	67	159904855	-	MmarC6_0467	-	30S ribosomal protein S27ae
460	 34.29	0	427372..427683	-	103	159904856	-	MmarC6_0468	-	30S ribosomal protein S24e
461	 34.80	0	427691..428167	-	158	159904857	-	MmarC6_0469	-	hypothetical protein
462	 33.90	0	428201..428377	-	58	159904858	-	MmarC6_0470	-	DNA-directed RNA polymerase subunit E, RpoE2
463	 37.23	0	428416..428979	-	187	159904859	-	MmarC6_0471	-	DNA-directed RNA polymerase subunit E'
464	 38.47	+1	429135..430049	-	304	159904860	-	MmarC6_0472	-	dihydroorotate dehydrogenase 1B
465	 29.26	-1	430143..430928	+	261	159904861	-	MmarC6_0473	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
466	 30.98	0	430938..432041	-	367	159904862	-	MmarC6_0474	-	glutamate--cysteine ligase GCS2
467	 34.38	0	432028..432978	-	316	159904863	-	MmarC6_0475	-	RimK domain-containing protein ATP-grasp
468	 31.19	0	432979..433584	-	201	159904864	-	MmarC6_0476	-	hypothetical protein
469	 40.16	+1	433851..434099	+	82	159904865	-	MmarC6_0477	-	hypothetical protein
470	 32.12	0	434137..434631	-	164	159904866	-	MmarC6_0478	-	putative flavodoxin
471	 33.60	0	434652..435413	-	253	159904867	-	MmarC6_0479	-	TatD-related deoxyribonuclease
472	 36.94	0	435593..436894	+	433	159904868	-	MmarC6_0480	-	beta-lactamase domain-containing protein
473	 30.76	0	436937..437635	-	232	159904869	-	MmarC6_0481	-	ribonuclease P
474	 34.98	0	437691..437993	-	100	159904870	-	MmarC6_0482	-	hypothetical protein
475	 35.51	0	438230..439330	+	366	159904871	-	MmarC6_0483	-	vanadium nitrogenase-associated related protein N
476	 35.55	0	439421..440368	+	315	159904872	-	MmarC6_0484	-	replication factor C small subunit
477	 34.21	0	440416..440985	-	189	159904873	-	MmarC6_0485	-	nitroreductase
478	 38.26	+1	441000..441642	-	213	159904874	-	MmarC6_0486	-	hypothetical protein
479	 34.77	0	441965..442729	-	254	159904875	-	MmarC6_0487	-	parallel beta-helix repeat-containing protein
480	 36.24	0	443060..443506	-	148	159904876	-	MmarC6_0488	-	hypothetical protein
481	 37.94	+1	443538..444449	-	303	159904877	-	MmarC6_0489	-	hypothetical protein
482	 32.40	0	444469..445434	-	321	159904878	-	MmarC6_0490	-	CBS domain-containing protein
483	 37.83	+1	445798..447309	-	503	159904879	-	MmarC6_0491	-	sodium:neurotransmitter symporter
484	 35.86	0	447446..448354	-	302	159904880	-	MmarC6_0492	-	ribokinase-like domain-containing protein
485	 37.24	0	448381..449097	-	238	159904881	-	MmarC6_0493	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
486	 34.93	0	449314..450945	-	543	159904882	-	MmarC6_0494	-	O-sialoglycoprotein endopeptidase/protein kinase
487	 37.56	0	451120..452988	+	622	159904883	-	MmarC6_0495	-	threonyl-tRNA synthetase
488	 35.43	0	453046..455241	-	731	159904884	-	MmarC6_0496	-	methyl-accepting chemotaxis sensory transducer
489	 32.32	0	457653..458930	-	425	159904885	-	MmarC6_0498	-	MiaB-like tRNA modifying enzyme
490	 34.92	0	458964..459467	+	167	159904886	-	MmarC6_0499	-	sulfopyruvate decarboxylase subunit alpha
491	 38.66	+1	459538..460401	-	287	159904887	-	MmarC6_0500	-	ribose-phosphate pyrophosphokinase
492	 32.99	0	460531..461691	+	386	159904888	-	MmarC6_0501	-	glucose-methanol-choline oxidoreductase
493	 33.98	0	461718..462638	-	306	159904889	-	MmarC6_0502	-	H+-transporting two-sector ATPase, A subunit
494	 34.30	0	462797..463210	+	137	159904890	-	MmarC6_0503	-	signal transduction protein
495	 28.22	-1	463214..463996	-	260	159904891	-	MmarC6_0504	-	TIM-barrel protein
496	 37.20	0	464024..464824	-	266	159904892	-	MmarC6_0505	-	GTP cyclohydrolase III
497	 32.47	0	464930..465859	-	309	159904893	-	MmarC6_0506	-	LPPG:FO 2-phospho-L-lactate transferase
498	 32.50	0	465874..466959	-	361	159904894	-	MmarC6_0507	-	glycosyltransferase family 28 protein
499	 30.32	0	467245..468606	-	453	159904895	-	MmarC6_0508	-	MarR family transcriptional regulator
500	 31.52	0	468626..469564	-	312	159904896	-	MmarC6_0509	-	methionine synthase
501	 38.23	+1	469601..470254	-	217	159904897	-	MmarC6_0510	-	amino acid-binding ACT domain-containing protein
502	 35.55	0	470264..471121	-	285	159904898	-	MmarC6_0511	-	peptidase M48 Ste24p
503	 33.90	0	471132..472007	-	291	159904899	-	MmarC6_0512	-	GHMP kinase
504	 36.88	0	472050..474728	-	892	159904900	-	MmarC6_0513	-	alanyl-tRNA synthetase
505	 38.98	+1	474927..476219	-	430	159904901	-	MmarC6_0514	-	phosphopyruvate hydratase
506	 31.18	0	476463..476741	+	92	159904902	-	MmarC6_0515	-	hypothetical protein
507	 30.20	0	476758..477492	+	244	159904903	-	MmarC6_0516	-	uroporphyrinogen III synthase HEM4
508	 36.05	0	477550..478065	+	171	159904904	-	MmarC6_0517	-	phosphodiesterase
509	 34.83	0	478257..479591	+	444	159904905	-	MmarC6_0518	-	phosphoribosylamine--glycine ligase
510	 37.86	+1	479689..480837	+	382	159904906	-	MmarC6_0519	-	alanine--glyoxylate transaminase
511	 35.45	0	480906..481565	+	219	159904907	-	MmarC6_0520	-	hypothetical protein
512	 35.76	0	481652..481816	+	54	159904908	-	MmarC6_0521	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
513	 37.68	0	481819..482991	+	390	159904909	-	MmarC6_0522	-	geranylgeranyl reductase
514	 35.59	0	482993..483568	-	191	159904910	-	MmarC6_0523	-	microsomal signal peptidase 21 KD subunit
515	 34.80	0	483822..484025	+	67	159904911	-	MmarC6_0524	-	transcription factor CBF/NF-Y/histone domain-containing protein
516	 37.17	0	484265..484942	+	225	159904912	-	MmarC6_0525	-	uridylate kinase
517	 32.79	0	485161..485343	+	60	159904913	-	MmarC6_0526	-	hypothetical protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.