IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
303	 38.58	+1	279616..280053	-	145	159904699	-	MmarC6_0308	-	UspA domain-containing protein
304	 35.74	0	280473..283133	+	886	159904700	-	MmarC6_0309	-	valyl-tRNA synthetase
305	 35.60	0	283194..283502	-	102	159904701	-	MmarC6_0310	-	branched-chain amino acid transport
306	 32.22	0	283495..284211	-	238	159904702	-	MmarC6_0311	-	AzlC family protein
307	 29.50	-1	284351..285133	-	260	159904703	-	MmarC6_0312	-	beta-lactamase domain-containing protein
308	 30.32	0	285210..285938	+	242	159904704	-	MmarC6_0313	-	anaerobic ribonucleoside-triphosphate reductase activating protein
309	 31.38	0	285948..286664	+	238	159904705	-	MmarC6_0314	-	hypothetical protein
310	 36.08	0	286765..287055	+	96	159904706	-	MmarC6_0315	-	chorismate mutase
311	 34.38	0	287137..287328	+	63	159904707	-	MmarC6_0316	-	30S ribosomal protein S17e
312	 37.24	0	287339..288208	+	289	159904708	-	MmarC6_0317	-	dihydrodipicolinate synthase
313	 33.33	0	288226..288465	+	79	159904709	-	MmarC6_0318	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
314	 28.33	-1	288483..288602	+	39	159904710	-	MmarC6_0319	-	hypothetical protein
315	 33.95	0	289009..289653	-	214	159904711	-	MmarC6_0320	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
316	 34.51	0	289763..290440	+	225	159904712	-	MmarC6_0321	-	peptidylprolyl isomerase FKBP-type
317	 33.56	0	290570..291466	+	298	159904713	-	MmarC6_0322	-	molybdenum cofactor biosynthesis protein A
318	 26.55	-1	291471..291971	+	166	159904714	-	MmarC6_0323	-	hypothetical protein
319	 34.21	0	292032..293627	+	531	159904715	-	MmarC6_0324	-	S-layer protein
320	 37.65	0	293779..294357	+	192	159904716	-	MmarC6_0325	-	XRE family transcriptional regulator
321	 34.56	0	294379..294786	+	135	159904717	-	MmarC6_0326	-	hypothetical protein
322	 37.52	0	294808..296457	+	549	159904718	-	MmarC6_0327	-	acyl-CoA synthetase
323	 28.46	-1	296494..297417	+	307	159904719	-	MmarC6_0328	-	hypothetical protein
324	 30.14	-1	297436..298344	+	302	159904720	-	MmarC6_0329	-	hypothetical protein
325	 30.43	0	298408..298890	+	160	159904721	-	MmarC6_0330	-	hypothetical protein
326	 31.27	0	299035..299325	+	96	159904722	-	MmarC6_0331	-	hypothetical protein
327	 32.87	0	299424..299858	+	144	159904723	-	MmarC6_0332	-	alkylhydroperoxidase
328	 30.45	0	299876..300637	-	253	159904724	-	MmarC6_0333	-	protein of unknown function Met10
329	 36.59	0	300701..301252	-	183	159904725	-	MmarC6_0334	-	ThiJ/PfpI domain-containing protein
330	 28.62	-1	301336..301632	+	98	159904726	-	MmarC6_0335	-	hypothetical protein
331	 27.78	-1	301644..302057	+	137	159904727	-	MmarC6_0336	-	hypothetical protein
332	 32.03	0	302059..302901	+	280	159904728	-	MmarC6_0337	-	TatD-related deoxyribonuclease
333	 31.31	0	302898..303590	-	230	159904729	-	MmarC6_0338	-	peptidase A24B
334	 32.50	0	303633..304235	-	200	159904730	-	MmarC6_0339	-	methyltransferase small
335	 35.85	0	304356..305270	+	304	159904731	-	MmarC6_0340	-	ornithine carbamoyltransferase
336	 27.63	-1	305291..306202	-	303	159904732	-	MmarC6_0341	-	hypothetical protein
337	 34.85	0	306259..306918	-	219	159904733	-	MmarC6_0342	-	polar amino acid ABC transporter, inner membrane subunit
338	 35.85	0	306953..307747	-	264	159904734	-	MmarC6_0343	-	extracellular solute-binding protein
339	 36.13	0	307964..308536	-	190	159904735	-	MmarC6_0344	-	imidazoleglycerol-phosphate dehydratase
340	 31.40	0	308657..309952	-	431	159904736	-	MmarC6_0345	-	phosphoesterase domain-containing protein
341	 37.80	+1	310013..310639	-	208	159904737	-	MmarC6_0346	-	AMMECR1 domain-containing protein
342	 34.95	0	310726..312576	-	616	159904738	-	MmarC6_0347	-	molybdenum cofactor synthesis domain-containing protein
343	 35.21	0	312604..313614	-	336	159904739	-	MmarC6_0348	-	radical SAM domain-containing protein
344	 31.78	0	313629..314144	-	171	159904740	-	MmarC6_0349	-	hypothetical protein
345	 31.51	0	314183..314785	-	200	159904741	-	MmarC6_0350	-	hypothetical protein
346	 34.58	0	314910..315551	-	213	159904742	-	MmarC6_0351	-	phosphoserine phosphatase SerB
347	 34.28	0	315589..316326	-	245	159904743	-	MmarC6_0352	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
348	 37.16	0	316406..317398	-	330	159904744	-	MmarC6_0353	-	3-isopropylmalate dehydrogenase
349	 27.78	-1	317566..317889	-	107	159904745	-	MmarC6_0354	-	hypothetical protein
350	 31.05	0	318076..318687	-	203	159904746	-	MmarC6_0355	-	hypothetical protein
351	 32.12	0	318777..319847	+	356	159904747	-	MmarC6_0356	-	DNA-(apurinic or apyrimidinic site) lyase
352	 31.88	0	319874..320287	+	137	159904748	-	MmarC6_0357	-	hypothetical protein
353	 32.90	0	320411..321109	+	232	159904749	-	MmarC6_0358	-	hypothetical protein
354	 32.78	0	321110..322192	+	360	159904750	-	MmarC6_0359	-	MscS mechanosensitive ion channel
355	 32.81	0	322434..323003	-	189	159904751	-	MmarC6_0360	-	hypothetical protein
356	 29.02	-1	323160..323669	-	169	159904752	-	MmarC6_0361	-	HEPN domain-containing protein
357	 30.10	-1	323656..324273	-	205	159904753	-	MmarC6_0362	-	DNA polymerase beta subunit
358	 32.61	0	324509..326167	+	552	159904754	-	MmarC6_0363	-	sulfate transporter
359	 33.78	0	326576..326797	+	73	159904755	-	MmarC6_0364	-	hypothetical protein
360	 28.53	-1	326798..327421	-	207	159904756	-	MmarC6_0365	-	hypothetical protein
361	 31.67	0	327437..328159	-	240	159904757	-	MmarC6_0366	-	hypothetical protein
362	 34.68	0	328665..329111	+	148	159904758	-	MmarC6_0367	-	hypothetical protein
363	 40.61	+1	329164..329781	+	205	159904759	-	MmarC6_0368	-	hypothetical protein
364	 38.01	+1	329977..330681	+	234	159904760	-	MmarC6_0369	-	ABC transporter related
365	 35.73	0	330674..332008	+	444	159904761	-	MmarC6_0370	-	hypothetical protein
366	 36.79	0	332022..333266	+	414	159904762	-	MmarC6_0371	-	hypothetical protein
367	 33.21	0	333367..335871	+	834	159904763	-	MmarC6_0372	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
368	 27.25	-1	335887..336264	+	125	159904764	-	MmarC6_0373	-	hypothetical protein
369	 37.04	0	336370..336639	+	89	159904765	-	MmarC6_0374	-	hypothetical protein
370	 28.63	-1	336720..337250	+	176	159904766	-	MmarC6_0375	-	beta-lactamase domain-containing protein
371	 34.86	0	337275..338126	-	283	159904767	-	MmarC6_0376	-	modD protein
372	 32.73	0	338235..338900	-	221	159904768	-	MmarC6_0377	-	molybdate ABC transporter, inner membrane subunit
373	 37.97	+1	338911..339687	-	258	159904769	-	MmarC6_0378	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
374	 33.69	0	339925..341046	+	373	159904770	-	MmarC6_0379	-	molybdenum cofactor synthesis domain-containing protein
375	 39.94	+1	341311..342642	-	443	159904771	-	MmarC6_0380	-	molybdenum containing formylmethanofuran dehydrogenase, subunit B
376	 38.22	+1	342648..343895	-	415	159904772	-	MmarC6_0381	-	formylmethanofuran dehydrogenase subunit C
377	 39.55	+1	343905..345656	-	583	159904773	-	MmarC6_0382	-	formylmethanofuran dehydrogenase subunit A
378	 38.37	+1	345700..346275	-	191	159904774	-	MmarC6_0383	-	formylmethanofuran dehydrogenase subunit E region
379	 35.63	0	346863..347645	+	260	159904775	-	MmarC6_0384	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
380	 33.58	0	347659..348459	+	266	159904776	-	MmarC6_0385	-	NifC-like ABC-type porter
381	 33.61	0	348446..349159	+	237	159904777	-	MmarC6_0386	-	hypothetical protein
382	 32.34	0	349175..350278	+	367	159904778	-	MmarC6_0387	-	ABC transporter related
383	 28.08	-1	351428..352264	+	278	159904779	-	MmarC6_0388	-	hypothetical protein
384	 34.61	0	352332..354521	-	729	159904780	-	MmarC6_0389	-	methyl-accepting chemotaxis sensory transducer
385	 26.98	-1	355271..355459	-	62	159904781	-	MmarC6_0390	-	hypothetical protein
386	 32.01	0	355884..356486	+	200	159904782	-	MmarC6_0391	-	hypothetical protein
387	 29.06	-1	356562..356795	-	77	159904783	-	MmarC6_0392	-	hypothetical protein
388	 26.34	-2	357030..357572	+	180	159904784	-	MmarC6_0393	-	hypothetical protein
389	 33.65	0	357649..358287	-	212	159904785	-	MmarC6_0394	-	hypothetical protein
390	 37.38	0	359042..364225	+	1727	159904786	-	MmarC6_0395	-	cobaltochelatase
391	 31.65	0	364430..365380	-	316	159904787	-	MmarC6_0396	-	aminoglycoside phosphotransferase
392	 33.95	0	365665..366315	+	216	159904788	-	MmarC6_0397	-	hypothetical protein
393	 29.52	-1	366400..367002	-	200	159904789	-	MmarC6_0398	-	signal transduction histidine kinase, LytS
394	 39.60	+1	367888..368190	-	100	159904790	-	MmarC6_0399	-	hypothetical protein
395	 30.60	0	368187..368699	-	170	159904791	-	MmarC6_0400	-	hypothetical protein
396	 35.01	0	368701..369117	-	138	159904792	-	MmarC6_0401	-	hypothetical protein
397	 51.73	+2	369375..369923	-	182	159904793	-	MmarC6_0402	-	hypothetical protein
398	 36.01	0	370209..370694	-	161	159904794	-	MmarC6_0403	-	GCN5-related N-acetyltransferase
399	 30.12	-1	371150..371491	-	113	159904795	-	MmarC6_0404	-	hypothetical protein
400	 32.75	0	371797..372306	-	169	159904796	-	MmarC6_0405	-	cobalbumin biosynthesis protein
401	 30.16	-1	372493..373281	-	262	159904797	-	MmarC6_0407	-	xylose isomerase domain-containing protein
402	 36.12	0	373830..374654	+	274	159904798	-	MmarC6_0408	-	hypothetical protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.