IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
202	 39.21	+1	188396..189637	+	413	159904598	-	MmarC6_0206	-	uracil-xanthine permease
203	 36.06	0	189674..190369	+	231	159904599	-	MmarC6_0207	-	uracil phosphoribosyltransferase
204	 38.58	+1	190460..192061	+	533	159904600	-	MmarC6_0208	-	Na+/H+ antiporter NhaC
205	 24.61	-2	192099..192545	-	148	159904601	-	MmarC6_0209	-	hypothetical protein
206	 32.52	0	192592..193575	-	327	159904602	-	MmarC6_0210	-	hypothetical protein
207	 32.70	0	193699..194175	+	158	159904603	-	MmarC6_0211	-	hypothetical protein
208	 30.19	0	194258..195655	+	465	159904604	-	MmarC6_0212	-	hypothetical protein
209	 28.13	-1	195997..197226	+	409	159904605	-	MmarC6_0213	-	TPR repeat-containing protein
210	 32.31	0	198255..198449	-	64	159904606	-	MmarC6_0215	-	hypothetical protein
211	 30.75	0	198459..199349	-	296	159904607	-	MmarC6_0216	-	hypothetical protein
212	 37.91	+1	199437..200114	-	225	159904608	-	MmarC6_0217	-	30S ribosomal protein S3Ae
213	 33.33	0	200127..200735	-	202	159904609	-	MmarC6_0218	-	hypothetical protein
214	 39.04	+1	200765..201430	-	221	159904610	-	MmarC6_0219	-	30S ribosomal protein S2
215	 37.52	0	201805..203430	+	541	159904611	-	MmarC6_0220	-	Na/Pi-cotransporter II-related protein
216	 29.04	-1	203488..203976	-	162	159904612	-	MmarC6_0221	-	hypothetical protein
217	 36.36	0	204025..204585	-	186	159904613	-	MmarC6_0222	-	hypothetical protein
218	 36.60	0	204613..206232	-	539	159904614	-	MmarC6_0223	-	sulphate transporter
219	 24.24	-2	206282..206512	-	76	159904615	-	MmarC6_0224	-	hypothetical protein
220	 35.62	0	206509..207384	-	291	159904616	-	MmarC6_0225	-	putative ATP binding related protein
221	 28.60	-1	207587..208768	+	393	159904617	-	MmarC6_0226	-	hypothetical protein
222	 36.80	0	208970..209488	+	172	159904618	-	MmarC6_0227	-	adenine phosphoribosyltransferase
223	 34.32	0	209530..210741	+	403	159904619	-	MmarC6_0228	-	peptidase U32
224	 37.70	0	210834..211727	+	297	159904620	-	MmarC6_0229	-	radical SAM domain-containing protein
225	 36.26	0	211828..212100	+	90	159904621	-	MmarC6_0230	-	hypothetical protein
226	 34.78	0	212162..212713	-	183	159904622	-	MmarC6_0231	-	hypothetical protein
227	 34.36	0	212789..212983	-	64	159904623	-	MmarC6_0232	-	thiamineS protein
228	 37.56	0	213041..214033	-	330	159904624	-	MmarC6_0233	-	ketol-acid reductoisomerase
229	 32.84	0	214534..215145	+	203	159904625	-	MmarC6_0234	-	hypothetical protein
230	 33.46	0	215361..216170	+	269	159904626	-	MmarC6_0235	-	hypothetical protein
231	 34.68	0	216533..217498	+	321	159904627	-	MmarC6_0236	-	bile acid:sodium symporter
232	 31.94	0	217583..217870	-	95	159904628	-	MmarC6_0237	-	hypothetical protein
233	 35.69	0	218237..218746	-	169	159904629	-	MmarC6_0238	-	acetolactate synthase 3 regulatory subunit
234	 39.74	+1	218760..220523	-	587	159904630	-	MmarC6_0239	-	acetolactate synthase catalytic subunit
235	 30.07	-1	220685..222214	+	509	159904631	-	MmarC6_0240	-	carbamoyltransferase
236	 30.08	-1	222225..223238	+	337	159904632	-	MmarC6_0241	-	RNA 3'-terminal-phosphate cyclase
237	 29.74	-1	223242..223658	+	138	159904633	-	MmarC6_0242	-	hypothetical protein
238	 30.48	0	223661..223870	-	69	159904634	-	MmarC6_0243	-	hypothetical protein
239	 35.66	0	224075..225019	+	314	159904635	-	MmarC6_0244	-	malate dehydrogenase
240	 32.31	0	225036..225911	+	291	159904636	-	MmarC6_0245	-	cation diffusion facilitator family transporter
241	 33.53	0	225916..226929	-	337	159904637	-	MmarC6_0246	-	hypothetical protein
242	 32.41	0	227069..228046	+	325	159904638	-	MmarC6_0247	-	hypothetical protein
243	 35.28	0	228136..228546	+	136	159904639	-	MmarC6_0248	-	50S ribosomal protein L7Ae
244	 38.10	+1	228586..228816	+	76	159904640	-	MmarC6_0249	-	30S ribosomal protein S28e
245	 35.45	0	228836..229024	+	62	159904641	-	MmarC6_0250	-	ribosomal protein L24E
246	 32.26	0	229119..231356	-	745	159904642	-	MmarC6_0251	-	hypothetical protein
247	 29.30	-1	231468..232013	-	181	159904643	-	MmarC6_0252	-	ArsR family transcriptional regulator
248	 34.96	0	232053..233282	-	409	159904644	-	MmarC6_0253	-	hypothetical protein
249	 35.12	0	233487..234212	-	241	159904645	-	MmarC6_0254	-	ABC transporter related
250	 35.34	0	234214..235407	-	397	159904646	-	MmarC6_0255	-	hypothetical protein
251	 35.73	0	235547..236131	-	194	159904647	-	MmarC6_0256	-	rubrerythrin
252	 28.40	-1	236238..237413	-	391	159904648	-	MmarC6_0257	-	ATP/GTP-binding motif-containing protein
253	 32.84	0	237580..237984	-	134	159904649	-	MmarC6_0258	-	DtxR family iron dependent repressor
254	 42.03	+2	238098..238304	+	68	159904650	-	MmarC6_0259	-	FeoA family protein
255	 33.69	0	238564..240507	+	647	159904651	-	MmarC6_0260	-	ferrous iron transport protein B
256	 28.41	-1	240602..241210	+	202	159904652	-	MmarC6_0261	-	GCN5-related N-acetyltransferase
257	 33.58	0	241284..241682	-	132	159904653	-	MmarC6_0262	-	transcriptional regulator, TrmB
258	 34.83	0	241850..242050	-	66	159904654	-	MmarC6_0263	-	TOBE domain-containing protein
259	 37.78	+1	242382..242651	+	89	159904655	-	MmarC6_0264	-	50S ribosomal protein L34e
260	 37.80	+1	242661..243197	+	178	159904656	-	MmarC6_0265	-	cytidylate kinase
261	 36.75	0	243280..243513	+	77	159904657	-	MmarC6_0266	-	50S ribosomal protein L14e
262	 35.32	0	243632..244033	-	133	159904658	-	MmarC6_0267	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
263	 35.43	0	244097..244765	-	222	159904659	-	MmarC6_0268	-	hypothetical protein
264	 34.10	0	244830..245738	-	302	159904660	-	MmarC6_0269	-	ADP-ribosylation/crystallin J1
265	 28.52	-1	245785..246594	+	269	159904661	-	MmarC6_0270	-	xylose isomerase domain-containing protein
266	 37.84	+1	246615..248210	-	531	159904662	-	MmarC6_0271	-	methyl coenzyme M reductase system, component A2
267	 35.11	0	248233..248625	-	130	159904663	-	MmarC6_0272	-	hypothetical protein
268	 32.73	0	248636..248965	-	109	159904664	-	MmarC6_0273	-	hypothetical protein
269	 31.79	0	249074..249721	-	215	159904665	-	MmarC6_0274	-	DNA repair and recombination protein RadB
270	 31.22	0	249749..251023	-	424	159904666	-	MmarC6_0275	-	hypothetical protein
271	 31.94	0	251152..252444	+	430	159904667	-	MmarC6_0276	-	tRNA pseudouridine synthase D TruD
272	 35.67	0	252658..253257	-	199	159904668	-	MmarC6_0277	-	NADPH-dependent FMN reductase
273	 32.46	0	253329..254129	-	266	159904669	-	MmarC6_0278	-	acetolactate decarboxylase
274	 25.17	-2	254209..254355	+	48	159904670	-	MmarC6_0279	-	hypothetical protein
275	 24.95	-2	254364..254888	+	174	159904671	-	MmarC6_0280	-	2'-5' RNA ligase
276	 31.49	0	254890..255432	-	180	159904672	-	MmarC6_0281	-	beta-lactamase domain-containing protein
277	 34.72	0	255486..257435	-	649	159904673	-	MmarC6_0282	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
278	 35.04	0	257582..257932	+	116	159904674	-	MmarC6_0283	-	peptidyl-tRNA hydrolase
279	 38.75	+1	258071..259306	+	411	159904675	-	MmarC6_0284	-	methanogenesis marker protein 15
280	 33.02	0	259342..260952	+	536	159904676	-	MmarC6_0285	-	hypothetical protein
281	 34.11	0	260976..261752	+	258	159904677	-	MmarC6_0286	-	ribosomal RNA methyltransferase RrmJ/FtsJ
282	 36.22	0	261807..262361	-	184	159904678	-	MmarC6_0287	-	putative RNA-processing protein
283	 33.58	0	262442..263263	-	273	159904679	-	MmarC6_0288	-	non-specific serine/threonine protein kinase
284	 43.49	+2	263272..263586	-	104	159904680	-	MmarC6_0289	-	translation initiation factor IF-1A
285	 33.79	0	263730..264383	+	217	159904681	-	MmarC6_0290	-	orotidine 5'-phosphate decarboxylase
286	 34.18	0	264508..265212	+	234	159904682	-	MmarC6_0291	-	hypothetical protein
287	 33.93	0	265279..265953	+	224	159904683	-	MmarC6_0292	-	hypothetical protein
288	 29.70	-1	265990..266733	+	247	159904684	-	MmarC6_0293	-	precorrin-6x reductase
289	 33.72	0	266743..268029	-	428	159904685	-	MmarC6_0294	-	phosphoglycerate mutase
290	 34.34	0	268187..268879	-	230	159904686	-	MmarC6_0295	-	fibrillarin
291	 36.91	0	268897..270351	-	484	159904687	-	MmarC6_0296	-	Pre-mRNA processing ribonucleoprotein
292	 34.40	0	270545..271855	+	436	159904688	-	MmarC6_0297	-	soluble liver antigen/liver pancreas antigen
293	 25.93	-2	271874..272440	+	188	159904689	-	MmarC6_0298	-	hypothetical protein
294	 38.42	+1	272511..273296	+	261	159904690	-	MmarC6_0299	-	cell division ATPase MinD
295	 28.96	-1	273293..273475	+	60	159904691	-	MmarC6_0300	-	hypothetical protein
296	 30.57	0	273487..274137	+	216	159904692	-	MmarC6_0301	-	hypothetical protein
297	 30.03	-1	274172..274867	+	231	159904693	-	MmarC6_0302	-	glycosyl transferase family protein
298	 33.72	0	274872..276404	-	510	159904694	-	MmarC6_0303	-	radical SAM domain-containing protein
299	 34.83	0	276660..276860	+	66	159904695	-	MmarC6_0304	-	hypothetical protein
300	 33.72	0	276868..277635	-	255	159904696	-	MmarC6_0305	-	diphthine synthase
301	 31.62	0	277716..278885	+	389	159904697	-	MmarC6_0306	-	sodium/hydrogen exchanger
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.