IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
143	 29.72	-1	124501..125994	+	497	159904539	-	MmarC6_0146	-	hypothetical protein
144	 34.73	0	126194..127123	+	309	159904540	-	MmarC6_0147	-	elongation factor Tu domain-containing protein
145	 36.19	0	127177..127980	-	267	159904541	-	MmarC6_0148	-	L-aspartate dehydrogenase
146	 32.16	0	128005..128259	-	84	159904542	-	MmarC6_0149	-	PRC-barrel domain-containing protein
147	 33.33	0	128383..128553	+	56	159904543	-	MmarC6_0150	-	hypothetical protein
148	 31.49	0	128573..129493	-	306	159904544	-	MmarC6_0151	-	DNA adenine methylase
149	 30.82	0	129568..129885	-	105	159904545	-	MmarC6_0152	-	hypothetical protein
150	 32.59	0	130020..131363	+	447	159904546	-	MmarC6_0153	-	MATE efflux family protein
151	 30.56	0	131457..132680	+	407	159904547	-	MmarC6_0154	-	exodeoxyribonuclease VII large subunit
152	 29.90	-1	132701..132904	+	67	159904548	-	MmarC6_0155	-	exodeoxyribonuclease VII small subunit
153	 29.05	-1	132914..133333	+	139	159904549	-	MmarC6_0156	-	hypothetical protein
154	 35.46	0	133451..136315	+	954	159904550	-	MmarC6_0157	-	excinuclease ABC, A subunit
155	 29.99	-1	136323..137906	+	527	159904551	-	MmarC6_0158	-	excinuclease ABC subunit C
156	 35.09	0	137903..139843	+	646	159904552	-	MmarC6_0159	-	excinuclease ABC subunit B
157	 30.47	0	139939..140496	+	185	159904553	-	MmarC6_0160	-	hypothetical protein
158	 25.62	-2	140505..140906	-	133	159904554	-	MmarC6_0161	-	hypothetical protein
159	 31.01	0	141075..141419	-	114	159904555	-	MmarC6_0162	-	hypothetical protein
160	 35.68	0	141475..142155	-	226	159904556	-	MmarC6_0163	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
161	 35.04	0	142259..143899	-	546	159904557	-	MmarC6_0164	-	hydroxylamine reductase
162	 30.15	-1	144156..144563	-	135	159904558	-	MmarC6_0165	-	CopG family transcriptional regulator
163	 35.04	0	144605..144955	-	116	159904559	-	MmarC6_0166	-	hypothetical protein
164	 27.93	-1	145340..145876	+	178	159904560	-	MmarC6_0167	-	hypothetical protein
165	 33.10	0	145879..146304	-	141	159904561	-	MmarC6_0168	-	amino acid-binding ACT domain-containing protein
166	 36.80	0	146318..147616	-	432	159904562	-	MmarC6_0169	-	phenylacetate--CoA ligase
167	 35.63	0	147627..148193	-	188	159904563	-	MmarC6_0170	-	indolepyruvate oxidoreductase subunit B
168	 36.33	0	148193..149929	-	578	159904564	-	MmarC6_0171	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit
169	 30.66	0	150405..151151	-	248	159904565	-	MmarC6_0172	-	extracellular solute-binding protein
170	 29.65	-1	151240..152298	-	352	159904566	-	MmarC6_0173	-	magnesium and cobalt transport protein CorA
171	 34.05	0	152308..155088	-	926	159904567	-	MmarC6_0174	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
172	 35.10	0	155246..155869	-	207	159904568	-	MmarC6_0175	-	hypothetical protein
173	 39.24	+1	156270..156980	-	236	159904569	-	MmarC6_0176	-	hypothetical protein
174	 37.00	0	157185..158438	+	417	159904570	-	MmarC6_0177	-	sodium/hydrogen exchanger
175	 35.12	0	158451..159734	+	427	159904571	-	MmarC6_0178	-	nucleotide sugar dehydrogenase
176	 30.52	0	159739..160839	+	366	159904572	-	MmarC6_0179	-	UDP-N-acetylglucosamine 2-epimerase
177	 38.16	+1	160933..161802	+	289	159904573	-	MmarC6_0180	-	cobyrinic acid ac-diamide synthase
178	 28.25	-1	161842..162864	+	340	159904574	-	MmarC6_0181	-	hypothetical protein
179	 35.04	0	162861..163739	-	292	159904575	-	MmarC6_0182	-	alpha-L-glutamate ligase
180	 34.02	0	163781..164215	-	144	159904576	-	MmarC6_0183	-	hypothetical protein
181	 28.89	-1	164423..164962	+	179	159904577	-	MmarC6_0184	-	PadR-like family transcriptional regulator
182	 34.81	0	164985..166334	+	449	159904578	-	MmarC6_0185	-	MATE efflux family protein
183	 32.08	0	166395..166712	-	105	159904579	-	MmarC6_0186	-	hypothetical protein
184	 34.59	0	166739..169606	-	955	159904580	-	MmarC6_0187	-	leucyl-tRNA synthetase
185	 34.56	0	169858..171240	+	460	159904581	-	MmarC6_0188	-	prolyl-tRNA synthetase
186	 38.48	+1	171338..171997	+	219	159904582	-	MmarC6_0189	-	proteasome endopeptidase complex
187	 36.43	0	172134..174041	+	635	159904583	-	MmarC6_0190	-	beta-lactamase domain-containing protein
188	 35.79	0	174609..175502	+	297	159904584	-	MmarC6_0192	-	cell wall binding repeat 2-containing protein
189	 32.23	0	175590..176132	+	180	159904585	-	MmarC6_0193	-	hypothetical protein
190	 28.49	-1	176138..176839	+	233	159904586	-	MmarC6_0194	-	ferredoxin-type protein (NapH)
191	 39.55	+1	176900..178201	-	433	159904587	-	MmarC6_0195	-	xanthine/uracil/vitamin C permease
192	 32.71	0	178297..179910	+	537	159904588	-	MmarC6_0196	-	O-phosphoseryl-tRNA synthetase
193	 30.43	0	179920..180126	-	68	159904589	-	MmarC6_0197	-	hypothetical protein
194	 33.85	0	180185..182122	-	645	159904590	-	MmarC6_0198	-	ferrous iron transport protein B
195	 36.23	0	182266..182472	-	68	159904591	-	MmarC6_0199	-	FeoA family protein
196	 37.43	0	182952..183635	-	227	159904592	-	MmarC6_0200	-	triosephosphate isomerase
197	 39.68	+1	183697..184515	-	272	159904593	-	MmarC6_0201	-	fructose-bisphosphate aldolase
198	 31.46	0	184918..185559	-	213	159904594	-	MmarC6_0202	-	methyltransferase small
199	 37.42	0	185667..186131	-	154	159904595	-	MmarC6_0203	-	heat shock protein Hsp20
200	 32.72	0	186287..187426	+	379	159904596	-	MmarC6_0204	-	signal recognition particle-docking protein FtsY
201	 34.57	0	187527..188093	+	188	159904597	-	MmarC6_0205	-	hypothetical protein
202	 39.21	+1	188396..189637	+	413	159904598	-	MmarC6_0206	-	uracil-xanthine permease
203	 36.06	0	189674..190369	+	231	159904599	-	MmarC6_0207	-	uracil phosphoribosyltransferase
204	 38.58	+1	190460..192061	+	533	159904600	-	MmarC6_0208	-	Na+/H+ antiporter NhaC
205	 24.61	-2	192099..192545	-	148	159904601	-	MmarC6_0209	-	hypothetical protein
206	 32.52	0	192592..193575	-	327	159904602	-	MmarC6_0210	-	hypothetical protein
207	 32.70	0	193699..194175	+	158	159904603	-	MmarC6_0211	-	hypothetical protein
208	 30.19	0	194258..195655	+	465	159904604	-	MmarC6_0212	-	hypothetical protein
209	 28.13	-1	195997..197226	+	409	159904605	-	MmarC6_0213	-	TPR repeat-containing protein
210	 32.31	0	198255..198449	-	64	159904606	-	MmarC6_0215	-	hypothetical protein
211	 30.75	0	198459..199349	-	296	159904607	-	MmarC6_0216	-	hypothetical protein
212	 37.91	+1	199437..200114	-	225	159904608	-	MmarC6_0217	-	30S ribosomal protein S3Ae
213	 33.33	0	200127..200735	-	202	159904609	-	MmarC6_0218	-	hypothetical protein
214	 39.04	+1	200765..201430	-	221	159904610	-	MmarC6_0219	-	30S ribosomal protein S2
215	 37.52	0	201805..203430	+	541	159904611	-	MmarC6_0220	-	Na/Pi-cotransporter II-related protein
216	 29.04	-1	203488..203976	-	162	159904612	-	MmarC6_0221	-	hypothetical protein
217	 36.36	0	204025..204585	-	186	159904613	-	MmarC6_0222	-	hypothetical protein
218	 36.60	0	204613..206232	-	539	159904614	-	MmarC6_0223	-	sulphate transporter
219	 24.24	-2	206282..206512	-	76	159904615	-	MmarC6_0224	-	hypothetical protein
220	 35.62	0	206509..207384	-	291	159904616	-	MmarC6_0225	-	putative ATP binding related protein
221	 28.60	-1	207587..208768	+	393	159904617	-	MmarC6_0226	-	hypothetical protein
222	 36.80	0	208970..209488	+	172	159904618	-	MmarC6_0227	-	adenine phosphoribosyltransferase
223	 34.32	0	209530..210741	+	403	159904619	-	MmarC6_0228	-	peptidase U32
224	 37.70	0	210834..211727	+	297	159904620	-	MmarC6_0229	-	radical SAM domain-containing protein
225	 36.26	0	211828..212100	+	90	159904621	-	MmarC6_0230	-	hypothetical protein
226	 34.78	0	212162..212713	-	183	159904622	-	MmarC6_0231	-	hypothetical protein
227	 34.36	0	212789..212983	-	64	159904623	-	MmarC6_0232	-	thiamineS protein
228	 37.56	0	213041..214033	-	330	159904624	-	MmarC6_0233	-	ketol-acid reductoisomerase
229	 32.84	0	214534..215145	+	203	159904625	-	MmarC6_0234	-	hypothetical protein
230	 33.46	0	215361..216170	+	269	159904626	-	MmarC6_0235	-	hypothetical protein
231	 34.68	0	216533..217498	+	321	159904627	-	MmarC6_0236	-	bile acid:sodium symporter
232	 31.94	0	217583..217870	-	95	159904628	-	MmarC6_0237	-	hypothetical protein
233	 35.69	0	218237..218746	-	169	159904629	-	MmarC6_0238	-	acetolactate synthase 3 regulatory subunit
234	 39.74	+1	218760..220523	-	587	159904630	-	MmarC6_0239	-	acetolactate synthase catalytic subunit
235	 30.07	-1	220685..222214	+	509	159904631	-	MmarC6_0240	-	carbamoyltransferase
236	 30.08	-1	222225..223238	+	337	159904632	-	MmarC6_0241	-	RNA 3'-terminal-phosphate cyclase
237	 29.74	-1	223242..223658	+	138	159904633	-	MmarC6_0242	-	hypothetical protein
238	 30.48	0	223661..223870	-	69	159904634	-	MmarC6_0243	-	hypothetical protein
239	 35.66	0	224075..225019	+	314	159904635	-	MmarC6_0244	-	malate dehydrogenase
240	 32.31	0	225036..225911	+	291	159904636	-	MmarC6_0245	-	cation diffusion facilitator family transporter
241	 33.53	0	225916..226929	-	337	159904637	-	MmarC6_0246	-	hypothetical protein
242	 32.41	0	227069..228046	+	325	159904638	-	MmarC6_0247	-	hypothetical protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.