IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1727	 30.42	0	1637513..1637890	+	125	159906123	-	MmarC6_1742	-	hypothetical protein
1728	 30.26	0	1637925..1638119	+	64	159906124	-	MmarC6_1743	-	4-oxalocrotonate tautomerase
1729	 34.71	0	1638194..1638775	+	193	159906125	-	MmarC6_1744	-	NADPH-dependent FMN reductase
1730	 29.60	-1	1638817..1639245	+	142	159906126	-	MmarC6_1745	-	hypothetical protein
1731	 36.44	0	1639274..1639756	-	160	159906127	-	MmarC6_1746	-	SNARE associated Golgi protein
1732	 34.12	0	1639772..1640152	-	126	159906128	-	MmarC6_1747	-	signal transduction protein
1733	 33.59	0	1640332..1640724	+	130	159906129	-	MmarC6_1748	-	transcriptional regulator, TrmB
1734	 33.55	0	1640751..1641677	+	308	159906130	-	MmarC6_1749	-	ribonuclease Z
1735	 36.79	0	1641693..1642271	+	192	159906131	-	MmarC6_1750	-	hypothetical protein
1736	 36.69	0	1642317..1643360	+	347	159906132	-	MmarC6_1751	-	selenophosphate synthetase
1737	 28.30	-1	1643396..1643554	-	52	159906133	-	MmarC6_1752	-	hypothetical protein
1738	 29.39	-1	1643641..1643868	+	75	159906134	-	MmarC6_1753	-	hypothetical protein
1739	 34.86	0	1643880..1644272	+	130	159906135	-	MmarC6_1754	-	hypothetical protein
1740	 34.49	0	1644336..1645376	+	346	159906136	-	MmarC6_1755	-	small GTP-binding protein
1741	 30.58	0	1645410..1646063	-	217	159906137	-	MmarC6_1756	-	rhodanese domain-containing protein
1742	 29.39	-1	1646073..1646732	-	219	159906138	-	MmarC6_1757	-	ATP/GTP-binding motif-containing protein
1743	 36.92	0	1646859..1648085	-	408	159906139	-	MmarC6_1758	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1744	 29.25	-1	1648189..1649460	-	423	159906140	-	MmarC6_1759	-	polysaccharide biosynthesis protein
1745	 29.63	-1	1649482..1650075	-	197	159906141	-	MmarC6_1760	-	TPR repeat-containing protein
1746	 36.55	0	1650199..1651131	-	310	159906142	-	MmarC6_1761	-	GMP synthase subunit B
1747	 35.89	0	1651154..1652755	-	533	159906143	-	MmarC6_1762	-	CTP synthetase
1748	 25.60	-2	1652923..1653465	+	180	159906144	-	MmarC6_1763	-	GCN5-related N-acetyltransferase
1749	 33.85	0	1653482..1654057	-	191	159906145	-	MmarC6_1764	-	exonuclease RNase T and DNA polymerase III
1750	 31.06	0	1654269..1656512	-	747	159906146	-	MmarC6_1765	-	DEAD/DEAH box helicase domain-containing protein
1751	 40.85	+1	1656709..1657347	+	212	159906147	-	MmarC6_1766	-	cobalt transport protein CbiM
1752	 35.19	0	1657340..1657663	+	107	159906148	-	MmarC6_1767	-	cobalt transport protein CbiN
1753	 25.41	-2	1657775..1658077	+	100	159906149	-	MmarC6_1768	-	stress responsive alpha-beta barrel domain-containing protein
1754	 30.87	0	1658219..1658989	+	256	159906150	-	MmarC6_1769	-	cobalt ABC transporter, inner membrane subunit CbiQ
1755	 31.73	0	1659174..1660355	+	393	159906151	-	MmarC6_1770	-	TPR repeat-containing protein
1756	 29.32	-1	1660447..1660944	+	165	159906152	-	MmarC6_1771	-	hypothetical protein
1757	 30.33	0	1660976..1661941	+	321	159906153	-	MmarC6_1772	-	hypothetical protein
1758	 36.17	0	1661968..1662849	-	293	159906154	-	MmarC6_1773	-	AIR synthase-like protein
1759	 31.37	0	1663040..1663396	+	118	159906155	-	MmarC6_1774	-	hypothetical protein
1760	 33.73	0	1663513..1664532	+	339	159906156	-	MmarC6_1775	-	isopropylmalate/isohomocitrate dehydrogenase
1761	 35.47	0	1664596..1666140	+	514	159906157	-	MmarC6_1776	-	seryl-tRNA synthetase
1762	 30.28	0	1666413..1666805	-	130	159906158	-	MmarC6_1777	-	ribonuclease P-related
1763	 31.90	0	1666894..1667733	+	279	159906159	-	MmarC6_1778	-	nicotinate-nucleotide pyrophosphorylase
1764	 31.82	0	1667753..1668811	+	352	159906160	-	MmarC6_1779	-	FO synthase subunit 1
1765	 35.33	0	1668821..1670422	-	533	159906161	-	MmarC6_1780	-	S-layer protein
1766	 30.31	0	1670608..1671468	+	286	159906162	-	MmarC6_1781	-	SAM (and some other nucleotide) binding motif
1767	 30.51	0	1671479..1673107	-	542	159906163	-	MmarC6_1782	-	TPR repeat-containing protein
1768	 36.28	0	1673197..1674111	-	304	159906164	-	MmarC6_1783	-	porphobilinogen deaminase
1769	 36.26	0	1674239..1675432	-	397	159906165	-	MmarC6_1784	-	hypothetical protein
1770	 31.34	0	1675472..1676425	-	317	159906166	-	MmarC6_1785	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1771	 36.30	0	1676456..1676893	-	145	159906167	-	MmarC6_1786	-	CMP/dCMP deaminase zinc-binding
1772	 33.39	0	1677096..1678727	+	543	159906168	-	MmarC6_1787	-	TPR repeat-containing protein
1773	 33.50	0	1679066..1680235	+	389	159906169	-	MmarC6_1788	-	glycine betaine/L-proline ABC transporter, ATPase subunit
1774	 40.29	+1	1680249..1681082	+	277	159906170	-	MmarC6_1789	-	binding-protein-dependent transport systems inner membrane component
1775	 39.64	+1	1681098..1681985	+	295	159906171	-	MmarC6_1790	-	substrate-binding region of ABC-type glycine betaine transport system
1776	 34.69	0	1682150..1683553	+	467	159906172	-	MmarC6_1791	-	aminotransferase class-III
1777	 33.50	0	1683608..1684774	-	388	159906173	-	MmarC6_1792	-	sodium/hydrogen exchanger
1778	 35.43	0	1684784..1685260	-	158	159906174	-	MmarC6_1793	-	signal transduction protein
1779	 28.42	-1	1685382..1686215	-	277	159906175	-	MmarC6_1794	-	GCN5-related N-acetyltransferase
1780	 35.48	0	1686208..1687509	-	433	159906176	-	MmarC6_1795	-	lysine 2,3-aminomutase YodO family protein
1781	 36.14	0	1688092..1688412	-	106	159906177	-	MmarC6_1796	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1782	 38.85	+1	1688378..1689754	-	458	159906178	-	MmarC6_1797	-	nitrogenase
1783	 38.60	+1	1689772..1691214	-	480	159906179	-	MmarC6_1798	-	nitrogenase MoFe cofactor biosynthesis protein NifE
1784	 38.08	+1	1691238..1692626	-	462	159906180	-	MmarC6_1799	-	nitrogenase
1785	 38.35	+1	1692619..1694052	-	477	159906181	-	MmarC6_1800	-	nitrogenase alpha chain
1786	 37.98	+1	1694103..1694468	-	121	159906182	-	MmarC6_1801	-	nitrogen regulatory protein P-II
1787	 39.62	+1	1694478..1694795	-	105	159906183	-	MmarC6_1802	-	nitrogen regulatory protein P-II
1788	 40.22	+1	1694838..1695665	-	275	159906184	-	MmarC6_1803	-	nitrogenase reductase
1789	 26.85	-1	1695986..1696309	+	107	159906185	-	MmarC6_1804	-	hypothetical protein
1790	 30.63	0	1696359..1696988	+	209	159906186	-	MmarC6_1805	-	hypothetical protein
1791	 29.87	-1	1697033..1698391	+	452	159906187	-	MmarC6_1806	-	hypothetical protein
1792	 32.06	0	1698438..1699694	-	418	159906188	-	MmarC6_1807	-	amino acid permease-associated region
1793	 33.01	0	1699719..1700342	-	207	159906189	-	MmarC6_1808	-	lysine exporter protein LysE/YggA
1794	 32.70	0	1700621..1701094	+	157	159906190	-	MmarC6_1809	-	peptide methionine sulfoxide reductase
1795	 31.50	0	1701135..1701734	+	199	159906191	-	MmarC6_1810	-	hypothetical protein
1796	 33.33	0	1701762..1702031	-	89	159906192	-	MmarC6_1811	-	hypothetical protein
1797	 25.14	-2	1702343..1702696	+	117	159906193	-	MmarC6_1812	-	hypothetical protein
1798	 34.29	0	1702723..1703454	-	243	159906194	-	MmarC6_1813	-	hypothetical protein
1799	 30.26	0	1703567..1703794	-	75	159906195	-	MmarC6_1814	-	hypothetical protein
1800	 27.32	-1	1703899..1704297	-	132	159906196	-	MmarC6_1815	-	hypothetical protein
1801	 29.20	-1	1704380..1705201	-	273	159906197	-	MmarC6_1816	-	hypothetical protein
1802	 30.95	0	1706076..1706663	+	195	159906198	-	MmarC6_1817	-	TetR family transcriptional regulator
1803	 28.87	-1	1706731..1707201	+	156	159906199	-	MmarC6_1818	-	hypothetical protein
1804	 26.31	-2	1707214..1707882	-	222	159906200	-	MmarC6_1819	-	hypothetical protein
1805	 30.86	0	1708243..1708848	+	201	159906201	-	MmarC6_1820	-	ribonuclease H
1806	 34.22	0	1708866..1709987	-	373	159906202	-	MmarC6_1821	-	2-hydroxyglutaryl-CoA dehydratase D-component
1807	 29.17	-1	1711581..1712444	+	287	159906203	-	MmarC6_1823	-	uroporphyrinogen decarboxylase
1808	 32.66	0	1712577..1714355	-	592	159906204	-	MmarC6_1824	-	ferredoxin
1809	 36.83	0	1714356..1715384	-	342	159906205	-	MmarC6_1825	-	methylcobalamin:coenzyme M methyltransferase
1810	 37.27	0	1715507..1716598	-	363	159906206	-	MmarC6_1826	-	uroporphyrinogen decarboxylase
1811	 36.21	0	1716623..1717282	-	219	159906207	-	MmarC6_1827	-	cobalamin B12-binding domain-containing protein
1812	 37.17	0	1717504..1717842	+	112	159906208	-	MmarC6_1828	-	hypothetical protein
1813	 26.82	-1	1718026..1718547	+	173	159906209	-	MmarC6_1829	-	hypothetical protein
1814	 29.94	-1	1718663..1718986	+	107	159906210	-	MmarC6_1830	-	hypothetical protein
1815	 36.78	0	1720181..1720528	+	115	159906211	-	MmarC6_1831	-	hypothetical protein
1816	 35.93	0	1720591..1720821	+	76	159906212	-	MmarC6_1832	-	hypothetical protein
1817	 41.08	+1	1722098..1722394	+	98	159906213	-	MmarC6_1833	-	hypothetical protein
1818	 39.83	+1	1726351..1727427	+	358	159906214	-	MmarC6_1834	-	hypothetical protein
1819	 36.48	0	1727436..1728197	-	253	159906215	-	MmarC6_1835	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1820	 36.13	0	1728768..1729160	-	130	159906216	-	MmarC6_1836	-	hypothetical protein
1821	 37.12	0	1730221..1732254	+	677	159906217	-	MmarC6_1837	-	MCM family protein
1822	 35.56	0	1732631..1733125	+	164	159906218	-	MmarC6_1838	-	hypothetical protein
1823	 33.36	0	1733482..1736670	-	1062	159906219	-	MmarC6_1839	-	type III restriction protein res subunit
1824	 32.48	0	1736672..1739731	-	1019	159906220	-	MmarC6_1840	-	DNA methylase N-4/N-6 domain-containing protein
1825	 35.62	0	1739721..1742561	-	946	159906221	-	MmarC6_1841	-	UvrD/REP helicase
1826	 39.30	+1	1742931..1743953	+	340	159906222	-	MmarC6_1842	-	integrase family protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.