IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1656	 35.09	0	1567807..1569801	+	664	159906052	-	MmarC6_1670	-	DNA topoisomerase VI subunit B
1657	 32.77	0	1569930..1570817	+	295	159906053	-	MmarC6_1671	-	RNA methyltransferase related protein
1658	 31.19	0	1570828..1571619	+	263	159906054	-	MmarC6_1672	-	dimethyladenosine transferase
1659	 39.97	+1	1571904..1574240	+	778	159906055	-	MmarC6_1673	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
1660	 36.80	0	1574250..1574768	+	172	159906056	-	MmarC6_1674	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
1661	 37.34	0	1574780..1576153	+	457	159906057	-	MmarC6_1675	-	acetyl-CoA decarbonylase/synthase complex subunit beta
1662	 35.19	0	1576164..1576916	+	250	159906058	-	MmarC6_1676	-	cobyrinic acid ac-diamide synthase
1663	 37.75	+1	1576931..1578085	+	384	159906059	-	MmarC6_1677	-	acetyl-CoA decarbonylase/synthase complex subunit delta
1664	 38.94	+1	1578099..1579472	+	457	159906060	-	MmarC6_1678	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
1665	 36.56	0	1579477..1579941	+	154	159906061	-	MmarC6_1679	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1666	 28.89	-1	1580044..1580223	+	59	159906062	-	MmarC6_1680	-	hypothetical protein
1667	 32.57	0	1580228..1581010	-	260	159906063	-	MmarC6_1681	-	cobyrinic acid ac-diamide synthase
1668	 33.79	0	1581007..1581663	-	218	159906064	-	MmarC6_1682	-	hypothetical protein
1669	 28.74	-1	1582010..1582423	+	137	159906065	-	MmarC6_1683	-	hypothetical protein
1670	 36.15	0	1582480..1583829	-	449	159906066	-	MmarC6_1684	-	adenylosuccinate lyase
1671	 31.30	0	1583851..1585572	-	573	159906067	-	MmarC6_1685	-	DNA ligase I, ATP-dependent Dnl1
1672	 33.10	0	1585600..1586022	-	140	159906068	-	MmarC6_1686	-	hypothetical protein
1673	 35.53	0	1586055..1587329	-	424	159906069	-	MmarC6_1687	-	histidinol dehydrogenase
1674	 34.03	0	1587342..1587773	-	143	159906070	-	MmarC6_1688	-	hypothetical protein
1675	 34.17	0	1587999..1588718	+	239	159906071	-	MmarC6_1689	-	uroporphyrin-III C-methyltransferase
1676	 33.85	0	1588784..1589362	+	192	159906072	-	MmarC6_1690	-	formylmethanofuran dehydrogenase subunit E region
1677	 31.03	0	1589407..1589667	-	86	159906073	-	MmarC6_1691	-	hypothetical protein
1678	 40.28	+1	1589796..1590515	-	239	159906074	-	MmarC6_1692	-	MIP family channel protein
1679	 39.35	+1	1590512..1590727	-	71	159906075	-	MmarC6_1693	-	zinc finger protein
1680	 37.40	0	1590762..1592261	-	499	159906076	-	MmarC6_1694	-	hypothetical protein
1681	 30.91	0	1592531..1593601	+	356	159906077	-	MmarC6_1695	-	hypothetical protein
1682	 35.22	0	1593687..1594589	+	300	159906078	-	MmarC6_1696	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1683	 31.61	0	1594608..1594955	+	115	159906079	-	MmarC6_1697	-	thioredoxin domain-containing protein
1684	 28.29	-1	1594977..1595630	+	217	159906080	-	MmarC6_1698	-	cytochrome c biogenesis protein transmembrane region
1685	 34.40	0	1595632..1598076	-	814	159906081	-	MmarC6_1699	-	DNA topoisomerase I
1686	 39.12	+1	1598124..1598987	-	287	159906082	-	MmarC6_1700	-	succinyl-CoA synthetase subunit alpha
1687	 31.22	0	1599550..1600023	+	157	159906083	-	MmarC6_1701	-	hypothetical protein
1688	 33.33	0	1600303..1601055	+	250	159906084	-	MmarC6_1702	-	precorrin-3B C17-methyltransferase
1689	 39.90	+1	1601198..1601593	+	131	159906085	-	MmarC6_1703	-	translation initiation factor IF-5A
1690	 29.75	-1	1601675..1602595	-	306	159906086	-	MmarC6_1704	-	cobalamin biosynthesis protein
1691	 29.56	-1	1602606..1604036	-	476	159906087	-	MmarC6_1705	-	hypothetical protein
1692	 30.43	0	1604049..1605428	-	459	159906088	-	MmarC6_1706	-	tRNA CCA-pyrophosphorylase
1693	 36.41	0	1605440..1605796	-	118	159906089	-	MmarC6_1707	-	hypothetical protein
1694	 34.26	0	1606066..1606932	+	288	159906090	-	MmarC6_1708	-	ATP phosphoribosyltransferase
1695	 37.09	0	1607119..1608528	+	469	159906091	-	MmarC6_1709	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1696	 33.50	0	1608573..1610414	-	613	159906092	-	MmarC6_1710	-	aldehyde ferredoxin oxidoreductase
1697	 35.01	0	1610506..1611516	+	336	159906093	-	MmarC6_1711	-	hypothetical protein
1698	 36.42	0	1611539..1611991	+	150	159906094	-	MmarC6_1712	-	cytidyltransferase-like protein
1699	 31.98	0	1612005..1612817	+	270	159906095	-	MmarC6_1713	-	hypothetical protein
1700	 33.79	0	1612825..1614363	+	512	159906096	-	MmarC6_1714	-	hypothetical protein
1701	 32.80	0	1614344..1614721	+	125	159906097	-	MmarC6_1715	-	hypothetical protein
1702	 35.40	0	1614733..1615410	+	225	159906098	-	MmarC6_1716	-	HAD family hydrolase
1703	 34.75	0	1615426..1616199	+	257	159906099	-	MmarC6_1717	-	cobalamin 5'-phosphate synthase
1704	 35.48	0	1616243..1616989	-	248	159906100	-	MmarC6_1718	-	F420-0--gamma-glutamyl ligase
1705	 29.76	-1	1616998..1617837	-	279	159906101	-	MmarC6_1719	-	shikimate 5-dehydrogenase
1706	 28.71	-1	1617843..1618340	-	165	159906102	-	MmarC6_1720	-	hypothetical protein
1707	 34.29	0	1618583..1619629	+	348	159906103	-	MmarC6_1721	-	hypothetical protein
1708	 33.60	0	1619713..1620084	+	123	159906104	-	MmarC6_1722	-	response regulator receiver protein
1709	 33.62	0	1620099..1620788	+	229	159906105	-	MmarC6_1723	-	CheC, inhibitor of MCP methylation
1710	 32.84	0	1620808..1621416	+	202	159906106	-	MmarC6_1724	-	CheC, inhibitor of MCP methylation
1711	 32.35	0	1621480..1622292	+	270	159906107	-	MmarC6_1725	-	MCP methyltransferase, CheR-type
1712	 34.47	0	1622320..1623723	-	467	159906108	-	MmarC6_1726	-	methyl-accepting chemotaxis sensory transducer
1713	 37.63	0	1623740..1624204	-	154	159906109	-	MmarC6_1727	-	chemoreceptor glutamine deamidase CheD
1714	 34.71	0	1624215..1626974	-	919	159906110	-	MmarC6_1728	-	CheA signal transduction histidine kinase
1715	 35.51	0	1626976..1628076	-	366	159906111	-	MmarC6_1729	-	response regulator receiver modulated CheB methylesterase
1716	 33.79	0	1628120..1628560	-	146	159906112	-	MmarC6_1730	-	CheW protein
1717	 35.68	0	1628571..1629167	-	198	159906113	-	MmarC6_1731	-	hypothetical protein
1718	 36.53	0	1629176..1629988	-	270	159906114	-	MmarC6_1732	-	dihydrodipicolinate reductase
1719	 29.53	-1	1629997..1630653	-	218	159906115	-	MmarC6_1733	-	putative phage infection protein
1720	 30.03	-1	1630765..1631097	-	110	159906116	-	MmarC6_1734	-	RNAse P, Rpr2/Rpp21 subunit
1721	 37.74	+1	1631260..1632507	+	415	159906117	-	MmarC6_1735	-	S-adenosyl-L-homocysteine hydrolase
1722	 35.42	0	1632539..1633306	+	255	159906118	-	MmarC6_1736	-	dihydroorotate dehydrogenase electron transfer subunit
1723	 32.75	0	1633399..1634940	+	513	159906119	-	MmarC6_1737	-	asparagine synthase (glutamine-hydrolyzing)
1724	 35.37	0	1634969..1635802	-	277	159906120	-	MmarC6_1738	-	diaminopimelate epimerase
1725	 34.54	0	1635853..1636101	-	82	159906121	-	MmarC6_1739	-	PRC-barrel domain-containing protein
1726	 34.32	0	1636787..1637494	+	235	159906122	-	MmarC6_1741	-	hypothetical protein
1727	 30.42	0	1637513..1637890	+	125	159906123	-	MmarC6_1742	-	hypothetical protein
1728	 30.26	0	1637925..1638119	+	64	159906124	-	MmarC6_1743	-	4-oxalocrotonate tautomerase
1729	 34.71	0	1638194..1638775	+	193	159906125	-	MmarC6_1744	-	NADPH-dependent FMN reductase
1730	 29.60	-1	1638817..1639245	+	142	159906126	-	MmarC6_1745	-	hypothetical protein
1731	 36.44	0	1639274..1639756	-	160	159906127	-	MmarC6_1746	-	SNARE associated Golgi protein
1732	 34.12	0	1639772..1640152	-	126	159906128	-	MmarC6_1747	-	signal transduction protein
1733	 33.59	0	1640332..1640724	+	130	159906129	-	MmarC6_1748	-	transcriptional regulator, TrmB
1734	 33.55	0	1640751..1641677	+	308	159906130	-	MmarC6_1749	-	ribonuclease Z
1735	 36.79	0	1641693..1642271	+	192	159906131	-	MmarC6_1750	-	hypothetical protein
1736	 36.69	0	1642317..1643360	+	347	159906132	-	MmarC6_1751	-	selenophosphate synthetase
1737	 28.30	-1	1643396..1643554	-	52	159906133	-	MmarC6_1752	-	hypothetical protein
1738	 29.39	-1	1643641..1643868	+	75	159906134	-	MmarC6_1753	-	hypothetical protein
1739	 34.86	0	1643880..1644272	+	130	159906135	-	MmarC6_1754	-	hypothetical protein
1740	 34.49	0	1644336..1645376	+	346	159906136	-	MmarC6_1755	-	small GTP-binding protein
1741	 30.58	0	1645410..1646063	-	217	159906137	-	MmarC6_1756	-	rhodanese domain-containing protein
1742	 29.39	-1	1646073..1646732	-	219	159906138	-	MmarC6_1757	-	ATP/GTP-binding motif-containing protein
1743	 36.92	0	1646859..1648085	-	408	159906139	-	MmarC6_1758	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1744	 29.25	-1	1648189..1649460	-	423	159906140	-	MmarC6_1759	-	polysaccharide biosynthesis protein
1745	 29.63	-1	1649482..1650075	-	197	159906141	-	MmarC6_1760	-	TPR repeat-containing protein
1746	 36.55	0	1650199..1651131	-	310	159906142	-	MmarC6_1761	-	GMP synthase subunit B
1747	 35.89	0	1651154..1652755	-	533	159906143	-	MmarC6_1762	-	CTP synthetase
1748	 25.60	-2	1652923..1653465	+	180	159906144	-	MmarC6_1763	-	GCN5-related N-acetyltransferase
1749	 33.85	0	1653482..1654057	-	191	159906145	-	MmarC6_1764	-	exonuclease RNase T and DNA polymerase III
1750	 31.06	0	1654269..1656512	-	747	159906146	-	MmarC6_1765	-	DEAD/DEAH box helicase domain-containing protein
1751	 40.85	+1	1656709..1657347	+	212	159906147	-	MmarC6_1766	-	cobalt transport protein CbiM
1752	 35.19	0	1657340..1657663	+	107	159906148	-	MmarC6_1767	-	cobalt transport protein CbiN
1753	 25.41	-2	1657775..1658077	+	100	159906149	-	MmarC6_1768	-	stress responsive alpha-beta barrel domain-containing protein
1754	 30.87	0	1658219..1658989	+	256	159906150	-	MmarC6_1769	-	cobalt ABC transporter, inner membrane subunit CbiQ
1755	 31.73	0	1659174..1660355	+	393	159906151	-	MmarC6_1770	-	TPR repeat-containing protein
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.