IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1605	 44.54	+2	1512072..1512740	-	222	159906001	-	MmarC6_1619	-	V-type ATP synthase subunit K
1606	 37.65	0	1512794..1514854	-	686	159906002	-	MmarC6_1620	-	V-type ATP synthase subunit I
1607	 32.69	0	1514888..1515196	-	102	159906003	-	MmarC6_1621	-	A1A0 ATPase, subunit H
1608	 29.79	-1	1515451..1515930	-	159	159906004	-	MmarC6_1622	-	hypothetical protein
1609	 34.20	0	1516011..1516817	-	268	159906005	-	MmarC6_1623	-	band 7 protein
1610	 36.96	0	1516870..1517283	-	137	159906006	-	MmarC6_1624	-	hypothetical protein
1611	 31.83	0	1517357..1517956	-	199	159906007	-	MmarC6_1625	-	dTMP kinase
1612	 32.11	0	1517983..1520916	-	977	159906008	-	MmarC6_1626	-	hypothetical protein
1613	 33.44	0	1521077..1523005	+	642	159906009	-	MmarC6_1627	-	replication factor A
1614	 38.00	+1	1523123..1523701	+	192	159906010	-	MmarC6_1628	-	adenylate kinase
1615	 36.01	0	1523766..1524362	+	198	159906011	-	MmarC6_1629	-	hypothetical protein
1616	 32.66	0	1524528..1525271	+	247	159906012	-	MmarC6_1630	-	extracellular solute-binding protein
1617	 25.56	-2	1525278..1525637	-	119	159906013	-	MmarC6_1631	-	hypothetical protein
1618	 31.42	0	1525725..1527767	-	680	159906014	-	MmarC6_1632	-	hypothetical protein
1619	 34.16	0	1527945..1529645	+	566	159906015	-	MmarC6_1633	-	arginyl-tRNA synthetase
1620	 30.56	0	1529772..1530275	+	167	159906016	-	MmarC6_1634	-	hypothetical protein
1621	 34.55	0	1530288..1532420	+	710	159906017	-	MmarC6_1635	-	MCM family protein
1622	 29.52	-1	1532532..1533134	+	200	159906018	-	MmarC6_1636	-	TetR family transcriptional regulator
1623	 38.95	+1	1533217..1534374	+	385	159906019	-	MmarC6_1637	-	hypothetical protein
1624	 35.63	0	1534376..1535941	+	521	159906020	-	MmarC6_1638	-	hypothetical protein
1625	 33.73	0	1536068..1537072	+	334	159906021	-	MmarC6_1639	-	hypothetical protein
1626	 27.44	-1	1537078..1537875	-	265	159906022	-	MmarC6_1640	-	PEGA domain-containing protein
1627	 37.86	+1	1537931..1539409	-	492	159906023	-	MmarC6_1641	-	(R)-citramalate synthase
1628	 37.17	0	1539564..1540970	+	468	159906024	-	MmarC6_1642	-	aspartate kinase
1629	 35.43	0	1541017..1542258	-	413	159906025	-	MmarC6_1643	-	signal transduction protein
1630	 31.33	0	1542467..1542766	-	99	159906026	-	MmarC6_1644	-	transcription factor CBF/NF-Y/histone domain-containing protein
1631	 33.71	0	1542885..1543952	-	355	159906027	-	MmarC6_1645	-	radical SAM domain-containing protein
1632	 36.91	0	1544018..1547263	-	1081	159906028	-	MmarC6_1646	-	carbamoyl-phosphate synthase, large subunit
1633	 33.87	0	1547554..1548303	+	249	159906029	-	MmarC6_1647	-	exodeoxyribonuclease III Xth
1634	 35.49	0	1548461..1550128	+	555	159906030	-	MmarC6_1648	-	glutamyl-tRNA synthetase
1635	 27.85	-1	1550239..1551132	+	297	159906031	-	MmarC6_1649	-	RluA family pseudouridine synthase
1636	 30.55	0	1551158..1552414	+	418	159906032	-	MmarC6_1650	-	dihydroorotase, multifunctional complex type
1637	 32.75	0	1552747..1553436	+	229	159906033	-	MmarC6_1651	-	indole-3-glycerol-phosphate synthase
1638	 35.51	0	1553436..1554401	+	321	159906034	-	MmarC6_1652	-	anthranilate phosphoribosyltransferase
1639	 36.52	0	1554394..1555713	+	439	159906035	-	MmarC6_1653	-	anthranilate synthase component I
1640	 34.69	0	1555694..1556284	+	196	159906036	-	MmarC6_1654	-	anthranilate synthase component II
1641	 30.82	0	1556301..1556936	+	211	159906037	-	MmarC6_1655	-	N-(5'-phosphoribosyl)anthranilate isomerase
1642	 39.75	+1	1556926..1558110	+	394	159906038	-	MmarC6_1656	-	tryptophan synthase subunit beta
1643	 36.55	0	1558111..1558887	+	258	159906039	-	MmarC6_1657	-	tryptophan synthase subunit alpha
1644	 34.81	0	1558910..1560130	-	406	159906040	-	MmarC6_1658	-	hypothetical protein
1645	 28.92	-1	1560346..1560594	+	82	159906041	-	MmarC6_1659	-	hypothetical protein
1646	 33.84	0	1560591..1561178	+	195	159906042	-	MmarC6_1660	-	protein of unknown function DUF340 membrane
1647	 35.06	0	1561267..1561959	-	230	159906043	-	MmarC6_1661	-	parallel beta-helix repeat-containing protein
1648	 35.19	0	1562381..1562812	+	143	159906044	-	MmarC6_1662	-	hypothetical protein
1649	 29.46	-1	1562821..1563207	+	128	159906045	-	MmarC6_1663	-	hypothetical protein
1650	 33.33	0	1563204..1563404	+	66	159906046	-	MmarC6_1664	-	XRE family transcriptional regulator
1651	 31.99	0	1563526..1564047	-	173	159906047	-	MmarC6_1665	-	hypothetical protein
1652	 27.56	-1	1564076..1564231	-	51	159906048	-	MmarC6_1666	-	hypothetical protein
1653	 29.91	-1	1564286..1565863	-	525	159906049	-	MmarC6_1667	-	hypothetical protein
1654	 35.68	0	1565865..1566632	-	255	159906050	-	MmarC6_1668	-	hypothetical protein
1655	 33.07	0	1566720..1567484	-	254	159906051	-	MmarC6_1669	-	hypothetical protein
1656	 35.09	0	1567807..1569801	+	664	159906052	-	MmarC6_1670	-	DNA topoisomerase VI subunit B
1657	 32.77	0	1569930..1570817	+	295	159906053	-	MmarC6_1671	-	RNA methyltransferase related protein
1658	 31.19	0	1570828..1571619	+	263	159906054	-	MmarC6_1672	-	dimethyladenosine transferase
1659	 39.97	+1	1571904..1574240	+	778	159906055	-	MmarC6_1673	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
1660	 36.80	0	1574250..1574768	+	172	159906056	-	MmarC6_1674	-	acetyl-CoA decarbonylase/synthase complex subunit epsilon
1661	 37.34	0	1574780..1576153	+	457	159906057	-	MmarC6_1675	-	acetyl-CoA decarbonylase/synthase complex subunit beta
1662	 35.19	0	1576164..1576916	+	250	159906058	-	MmarC6_1676	-	cobyrinic acid ac-diamide synthase
1663	 37.75	+1	1576931..1578085	+	384	159906059	-	MmarC6_1677	-	acetyl-CoA decarbonylase/synthase complex subunit delta
1664	 38.94	+1	1578099..1579472	+	457	159906060	-	MmarC6_1678	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
1665	 36.56	0	1579477..1579941	+	154	159906061	-	MmarC6_1679	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1666	 28.89	-1	1580044..1580223	+	59	159906062	-	MmarC6_1680	-	hypothetical protein
1667	 32.57	0	1580228..1581010	-	260	159906063	-	MmarC6_1681	-	cobyrinic acid ac-diamide synthase
1668	 33.79	0	1581007..1581663	-	218	159906064	-	MmarC6_1682	-	hypothetical protein
1669	 28.74	-1	1582010..1582423	+	137	159906065	-	MmarC6_1683	-	hypothetical protein
1670	 36.15	0	1582480..1583829	-	449	159906066	-	MmarC6_1684	-	adenylosuccinate lyase
1671	 31.30	0	1583851..1585572	-	573	159906067	-	MmarC6_1685	-	DNA ligase I, ATP-dependent Dnl1
1672	 33.10	0	1585600..1586022	-	140	159906068	-	MmarC6_1686	-	hypothetical protein
1673	 35.53	0	1586055..1587329	-	424	159906069	-	MmarC6_1687	-	histidinol dehydrogenase
1674	 34.03	0	1587342..1587773	-	143	159906070	-	MmarC6_1688	-	hypothetical protein
1675	 34.17	0	1587999..1588718	+	239	159906071	-	MmarC6_1689	-	uroporphyrin-III C-methyltransferase
1676	 33.85	0	1588784..1589362	+	192	159906072	-	MmarC6_1690	-	formylmethanofuran dehydrogenase subunit E region
1677	 31.03	0	1589407..1589667	-	86	159906073	-	MmarC6_1691	-	hypothetical protein
1678	 40.28	+1	1589796..1590515	-	239	159906074	-	MmarC6_1692	-	MIP family channel protein
1679	 39.35	+1	1590512..1590727	-	71	159906075	-	MmarC6_1693	-	zinc finger protein
1680	 37.40	0	1590762..1592261	-	499	159906076	-	MmarC6_1694	-	hypothetical protein
1681	 30.91	0	1592531..1593601	+	356	159906077	-	MmarC6_1695	-	hypothetical protein
1682	 35.22	0	1593687..1594589	+	300	159906078	-	MmarC6_1696	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1683	 31.61	0	1594608..1594955	+	115	159906079	-	MmarC6_1697	-	thioredoxin domain-containing protein
1684	 28.29	-1	1594977..1595630	+	217	159906080	-	MmarC6_1698	-	cytochrome c biogenesis protein transmembrane region
1685	 34.40	0	1595632..1598076	-	814	159906081	-	MmarC6_1699	-	DNA topoisomerase I
1686	 39.12	+1	1598124..1598987	-	287	159906082	-	MmarC6_1700	-	succinyl-CoA synthetase subunit alpha
1687	 31.22	0	1599550..1600023	+	157	159906083	-	MmarC6_1701	-	hypothetical protein
1688	 33.33	0	1600303..1601055	+	250	159906084	-	MmarC6_1702	-	precorrin-3B C17-methyltransferase
1689	 39.90	+1	1601198..1601593	+	131	159906085	-	MmarC6_1703	-	translation initiation factor IF-5A
1690	 29.75	-1	1601675..1602595	-	306	159906086	-	MmarC6_1704	-	cobalamin biosynthesis protein
1691	 29.56	-1	1602606..1604036	-	476	159906087	-	MmarC6_1705	-	hypothetical protein
1692	 30.43	0	1604049..1605428	-	459	159906088	-	MmarC6_1706	-	tRNA CCA-pyrophosphorylase
1693	 36.41	0	1605440..1605796	-	118	159906089	-	MmarC6_1707	-	hypothetical protein
1694	 34.26	0	1606066..1606932	+	288	159906090	-	MmarC6_1708	-	ATP phosphoribosyltransferase
1695	 37.09	0	1607119..1608528	+	469	159906091	-	MmarC6_1709	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1696	 33.50	0	1608573..1610414	-	613	159906092	-	MmarC6_1710	-	aldehyde ferredoxin oxidoreductase
1697	 35.01	0	1610506..1611516	+	336	159906093	-	MmarC6_1711	-	hypothetical protein
1698	 36.42	0	1611539..1611991	+	150	159906094	-	MmarC6_1712	-	cytidyltransferase-like protein
1699	 31.98	0	1612005..1612817	+	270	159906095	-	MmarC6_1713	-	hypothetical protein
1700	 33.79	0	1612825..1614363	+	512	159906096	-	MmarC6_1714	-	hypothetical protein
1701	 32.80	0	1614344..1614721	+	125	159906097	-	MmarC6_1715	-	hypothetical protein
1702	 35.40	0	1614733..1615410	+	225	159906098	-	MmarC6_1716	-	HAD family hydrolase
1703	 34.75	0	1615426..1616199	+	257	159906099	-	MmarC6_1717	-	cobalamin 5'-phosphate synthase
1704	 35.48	0	1616243..1616989	-	248	159906100	-	MmarC6_1718	-	F420-0--gamma-glutamyl ligase
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.