IslandPathversion 1.0

IslandPath Analysis: Methanococcus maripaludis C6



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.95 STD DEV: 3.79
Methanococcus maripaludis C6, complete genome - 1..1744193
1826 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1494	 25.93	-2	1412462..1412677	-	71	159905890	-	MmarC6_1507	-	heavy metal transport/detoxification protein
1495	 31.11	0	1412805..1413119	-	104	159905891	-	MmarC6_1508	-	CutA1 divalent ion tolerance protein
1496	 33.68	0	1413137..1414300	-	387	159905892	-	MmarC6_1509	-	beta-lactamase domain-containing protein
1497	 32.76	0	1414329..1414679	-	116	159905893	-	MmarC6_1510	-	hypothetical protein
1498	 37.04	0	1414713..1414901	-	62	159905894	-	MmarC6_1511	-	hypothetical protein
1499	 35.23	0	1414912..1415439	-	175	159905895	-	MmarC6_1512	-	Ferritin Dps family protein
1500	 34.46	0	1415463..1415729	-	88	159905896	-	MmarC6_1513	-	hypothetical protein
1501	 33.61	0	1415751..1416107	-	118	159905897	-	MmarC6_1514	-	desulfoferrodoxin ferrous iron-binding region
1502	 33.97	0	1416120..1416434	-	104	159905898	-	MmarC6_1515	-	carboxymuconolactone decarboxylase
1503	 38.43	+1	1416475..1417377	-	300	159905899	-	MmarC6_1516	-	CoB--CoM heterodisulfide reductase, subunit B
1504	 36.96	0	1417390..1417968	-	192	159905900	-	MmarC6_1517	-	CoB--CoM heterodisulfide reductase, subunit C
1505	 38.21	+1	1418203..1419330	+	375	159905901	-	MmarC6_1518	-	NADH-ubiquinone oxidoreductase chain 49kDa
1506	 31.96	0	1419373..1419735	+	120	159905902	-	MmarC6_1519	-	CBS domain-containing protein
1507	 39.45	+1	1419796..1421070	-	424	159905903	-	MmarC6_1520	-	homoaconitate hydratase family protein
1508	 33.33	0	1421202..1421420	+	72	159905904	-	MmarC6_1521	-	like-Sm ribonucleoprotein core
1509	 35.90	0	1421498..1421692	+	64	159905905	-	MmarC6_1522	-	50S ribosomal protein L37e
1510	 35.29	0	1421865..1423244	+	459	159905906	-	MmarC6_1523	-	amidophosphoribosyltransferase
1511	 35.99	0	1423292..1424080	-	262	159905907	-	MmarC6_1524	-	cell division ATPase MinD
1512	 30.93	0	1424232..1424981	+	249	159905908	-	MmarC6_1525	-	bacitracin resistance protein BacA
1513	 29.82	-1	1425044..1425754	-	236	159905909	-	MmarC6_1526	-	metallophosphoesterase
1514	 35.50	0	1425757..1428381	-	874	159905910	-	MmarC6_1527	-	ATP-dependent helicase
1515	 32.58	0	1428563..1428829	-	88	159905911	-	MmarC6_1528	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1516	 33.97	0	1429004..1429627	-	207	159905912	-	MmarC6_1529	-	thiamine-phosphate pyrophosphorylase
1517	 38.08	+1	1429617..1430417	-	266	159905913	-	MmarC6_1530	-	hydroxyethylthiazole kinase
1518	 34.52	0	1430627..1431049	+	140	159905914	-	MmarC6_1531	-	AsnC family transcriptional regulator
1519	 35.00	0	1431100..1431519	-	139	159905915	-	MmarC6_1532	-	rubrerythrin
1520	 34.67	0	1433599..1434642	-	347	159905916	-	MmarC6_1534	-	malate/L-lactate dehydrogenase
1521	 32.58	0	1434661..1435191	-	176	159905917	-	MmarC6_1535	-	tRNA-splicing endonuclease subunit alpha
1522	 36.43	0	1435381..1436640	+	419	159905918	-	MmarC6_1536	-	peptide chain release factor 1
1523	 31.58	0	1436703..1437101	+	132	159905919	-	MmarC6_1537	-	hypothetical protein
1524	 35.77	0	1437211..1437702	+	163	159905920	-	MmarC6_1538	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1525	 34.66	0	1437739..1438341	+	200	159905921	-	MmarC6_1539	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
1526	 32.87	0	1438383..1440524	-	713	159905922	-	MmarC6_1540	-	RNA-binding S1 domain-containing protein
1527	 32.73	0	1440575..1441402	-	275	159905923	-	MmarC6_1541	-	RNA methylase
1528	 26.18	-2	1441422..1441910	-	162	159905924	-	MmarC6_1542	-	hypothetical protein
1529	 32.91	0	1441904..1442848	-	314	159905925	-	MmarC6_1543	-	thiamine-monophosphate kinase
1530	 33.18	0	1443181..1444497	+	438	159905926	-	MmarC6_1544	-	radical SAM domain-containing protein
1531	 33.67	0	1444541..1445719	+	392	159905927	-	MmarC6_1545	-	translation-associated GTPase
1532	 31.21	0	1445754..1446317	+	187	159905928	-	MmarC6_1546	-	metal dependent phophohydrolase
1533	 34.58	0	1446361..1448202	-	613	159905929	-	MmarC6_1547	-	integral membrane sensor signal transduction histidine kinase
1534	 33.86	0	1448329..1449273	-	314	159905930	-	MmarC6_1548	-	YjlA
1535	 34.01	0	1449415..1449711	+	98	159905931	-	MmarC6_1549	-	hypothetical protein
1536	 31.30	0	1449713..1450204	-	163	159905932	-	MmarC6_1550	-	hypothetical protein
1537	 36.94	0	1450286..1451338	-	350	159905933	-	MmarC6_1551	-	cellulase
1538	 35.51	0	1451670..1452497	+	275	159905934	-	MmarC6_1552	-	transketolase domain-containing protein
1539	 36.06	0	1452511..1453170	+	219	159905935	-	MmarC6_1553	-	ribulose-phosphate 3-epimerase
1540	 35.46	0	1453230..1454168	+	312	159905936	-	MmarC6_1554	-	transketolase central region
1541	 31.48	0	1454230..1454985	+	251	159905937	-	MmarC6_1555	-	hypothetical protein
1542	 30.45	0	1454990..1456063	+	357	159905938	-	MmarC6_1556	-	hypothetical protein
1543	 28.31	-1	1456050..1457204	+	384	159905939	-	MmarC6_1557	-	hypothetical protein
1544	 32.97	0	1457254..1458363	+	369	159905940	-	MmarC6_1558	-	hypothetical protein
1545	 31.65	0	1458375..1459325	+	316	159905941	-	MmarC6_1559	-	magnesium and cobalt transport protein CorA
1546	 26.30	-2	1459340..1459609	+	89	159905942	-	MmarC6_1560	-	ribonucleoprotein complex SRP, Srp19 component
1547	 25.08	-2	1459610..1459924	-	104	159905943	-	MmarC6_1561	-	hypothetical protein
1548	 34.71	0	1459937..1461025	-	362	159905944	-	MmarC6_1562	-	succinyl-CoA synthetase, beta subunit
1549	 30.43	0	1461078..1461524	-	148	159905945	-	MmarC6_1563	-	aspartate carbamoyltransferase regulatory subunit
1550	 32.09	0	1461574..1462218	-	214	159905946	-	MmarC6_1564	-	TfuA domain-containing protein
1551	 29.86	-1	1462215..1462790	-	191	159905947	-	MmarC6_1565	-	phospholipase D/transphosphatidylase
1552	 36.70	0	1462943..1464130	+	395	159905948	-	MmarC6_1566	-	acetylornithine aminotransferase
1553	 33.09	0	1464351..1464758	+	135	159905949	-	MmarC6_1567	-	transcriptional regulator, TrmB
1554	 31.62	0	1464755..1465456	-	233	159905950	-	MmarC6_1568	-	phosphate uptake regulator, PhoU
1555	 33.33	0	1465481..1466236	-	251	159905951	-	MmarC6_1569	-	phosphate ABC transporter, ATPase subunit
1556	 37.95	+1	1466255..1467121	-	288	159905952	-	MmarC6_1570	-	phosphate ABC transporter, inner membrane subunit PstA
1557	 34.82	0	1467134..1468009	-	291	159905953	-	MmarC6_1571	-	phosphate ABC transporter, inner membrane subunit PstC
1558	 36.41	0	1468079..1468924	-	281	159905954	-	MmarC6_1572	-	phosphate binding protein
1559	 36.23	0	1469170..1471446	+	758	159905955	-	MmarC6_1573	-	phosphoenolpyruvate synthase
1560	 28.19	-1	1471511..1471957	+	148	159905956	-	MmarC6_1574	-	phosphopantetheine adenylyltransferase
1561	 33.22	0	1471954..1472868	+	304	159905957	-	MmarC6_1575	-	auxin efflux carrier
1562	 33.69	0	1472951..1473799	+	282	159905958	-	MmarC6_1576	-	UTP-glucose-1-phosphate uridylyltransferase
1563	 30.03	-1	1473911..1474789	+	292	159905959	-	MmarC6_1577	-	NAD-dependent epimerase/dehydratase
1564	 25.84	-2	1474770..1475837	+	355	159905960	-	MmarC6_1578	-	hypothetical protein
1565	 25.39	-2	1475845..1476687	-	280	159905961	-	MmarC6_1579	-	glycosyl transferase family protein
1566	 30.43	0	1476668..1478044	-	458	159905962	-	MmarC6_1580	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
1567	 23.73	-2	1478047..1478994	-	315	159905963	-	MmarC6_1581	-	hypothetical protein
1568	 34.02	0	1479119..1480432	+	437	159905964	-	MmarC6_1582	-	phosphoglucosamine mutase
1569	 31.31	0	1480442..1481677	+	411	159905965	-	MmarC6_1583	-	nucleotidyl transferase
1570	 32.48	0	1481679..1482149	+	156	159905966	-	MmarC6_1584	-	dUTP diphosphatase
1571	 37.86	+1	1482219..1482461	-	80	159905967	-	MmarC6_1585	-	hypothetical protein
1572	 36.08	0	1482471..1482725	-	84	159905968	-	MmarC6_1586	-	putative monovalent cation/H+ antiporter subunit G
1573	 34.75	0	1482925..1484052	+	375	159905969	-	MmarC6_1587	-	aminotransferase class I and II
1574	 30.22	0	1484067..1484483	+	138	159905970	-	MmarC6_1588	-	hypothetical protein
1575	 32.20	0	1484577..1485194	+	205	159905971	-	MmarC6_1589	-	hypothetical protein
1576	 34.63	0	1485225..1486148	+	307	159905972	-	MmarC6_1590	-	signal peptide peptidase SppA, 36K type
1577	 34.17	0	1486192..1487148	+	318	159905973	-	MmarC6_1591	-	CaCA family Na(+)/Ca(+) antiporter
1578	 34.55	0	1487287..1488771	+	494	159905974	-	MmarC6_1592	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
1579	 32.25	0	1488789..1489250	-	153	159905975	-	MmarC6_1593	-	putative molybdenum cofactor biosynthesis protein C
1580	 31.95	0	1489349..1489783	+	144	159905976	-	MmarC6_1594	-	BadM/Rrf2 family transcriptional regulator
1581	 31.03	0	1489780..1490343	+	187	159905977	-	MmarC6_1595	-	adenylyl cyclase CyaB
1582	 37.73	0	1490448..1491992	-	514	159905978	-	MmarC6_1596	-	2-isopropylmalate synthase
1583	 32.41	0	1492061..1493905	-	614	159905979	-	MmarC6_1597	-	hypothetical protein
1584	 29.61	-1	1493939..1494556	-	205	159905980	-	MmarC6_1598	-	hypothetical protein
1585	 31.45	0	1494598..1496028	-	476	159905981	-	MmarC6_1599	-	cysteinyl-tRNA synthetase
1586	 35.06	0	1496039..1497490	-	483	159905982	-	MmarC6_1600	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1587	 29.41	-1	1497716..1498684	-	322	159905983	-	MmarC6_1601	-	hypothetical protein
1588	 35.08	0	1498726..1499928	-	400	159905984	-	MmarC6_1602	-	methanogenesis marker protein 1
1589	 24.84	-2	1499952..1500257	-	101	159905985	-	MmarC6_1603	-	hypothetical protein
1590	 38.20	+1	1500389..1500943	+	184	159905986	-	MmarC6_1604	-	CoB--CoM heterodisulfide reductase, subunit C
1591	 40.36	+1	1500978..1501859	+	293	159905987	-	MmarC6_1605	-	CoB--CoM heterodisulfide reductase, subunit B
1592	 34.57	0	1501901..1502710	-	269	159905988	-	MmarC6_1606	-	regulatory protein Crp
1593	 36.86	0	1503139..1503933	+	264	159905989	-	MmarC6_1607	-	stationary-phase survival protein SurE
33.95	MEAN

3.79	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.